BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0025.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08628207.1| photosynthetic reaction center protein [Brady...   137   6e-31
ref|YP_001757166.1| PRC-barrel domain-containing protein [Methyl...   120   8e-26
ref|ZP_00052021.1| COG3861: Uncharacterized protein conserved in...   119   2e-25
ref|YP_766115.1| hypothetical protein RL0506 [Rhizobium legumino...   118   2e-25
ref|YP_002973995.1| PRC-barrel domain protein [Rhizobium legumin...   117   4e-25

>ref|ZP_08628207.1| photosynthetic reaction center protein [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP09116.1| photosynthetic reaction center protein [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 120

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 10/126 (7%)

Query: 2   AVEVETRPHQLIASDRVEGTAVRRANGDMIGHIERLMIDKISGKVSYAVLSFGGFLXIGT 61
           A  +  +PH+L+ASDRVEGT V  A+G  IG I+RLMIDK+SG V+YAVL FGGFL +G 
Sbjct: 3   ADTINLKPHRLVASDRVEGTRVFNADGRKIGSIKRLMIDKVSGNVAYAVLCFGGFLGVGE 62

Query: 62  XLIPLPWGRLHYNPTFEAYEL--DIEDEELKRAPSFRADKDFDWGDRSQEVELHRFYGVP 119
              PLPW  + YNP  EAYEL   + DEEL +APSF  DK+FDWG+R +EV+        
Sbjct: 63  DYRPLPWASMKYNPAIEAYELLTLMTDEELSKAPSFGTDKEFDWGNRVREVD-------- 114

Query: 120 PYWGGF 125
            YW GF
Sbjct: 115 AYWIGF 120


>ref|YP_001757166.1| PRC-barrel domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gb|ACB26483.1| PRC-barrel domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 142

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 79/115 (68%)

Query: 9   PHQLIASDRVEGTAVRRANGDMIGHIERLMIDKISGKVSYAVLSFGGFLXIGTXLIPLPW 68
           P +LIASDRV GT VRR++G  +G IERLM+DK+SG+V+YAV+SFGGFL +G     LPW
Sbjct: 27  PRRLIASDRVIGTDVRRSDGTRVGRIERLMLDKVSGRVAYAVMSFGGFLGLGEDFYTLPW 86

Query: 69  GRLHYNPTFEAYELDIEDEELKRAPSFRADKDFDWGDRSQEVELHRFYGVPPYWG 123
             L + P  +AY +DI +E+L+ AP+   +      D + E ++HR+Y   PYWG
Sbjct: 87  SVLRFEPQQDAYVVDISEEQLRAAPARTPEGTDPAADGAWEEQIHRYYDAAPYWG 141


>ref|ZP_00052021.1| COG3861: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 134

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 77/115 (66%)

Query: 9   PHQLIASDRVEGTAVRRANGDMIGHIERLMIDKISGKVSYAVLSFGGFLXIGTXLIPLPW 68
           P  LIASDRV GT VRR +GD +G IERLM+DK SG+V+YAV+SFGGFL +G     LPW
Sbjct: 19  PRSLIASDRVIGTEVRRPDGDKVGRIERLMLDKRSGRVAYAVMSFGGFLGMGEEYYTLPW 78

Query: 69  GRLHYNPTFEAYELDIEDEELKRAPSFRADKDFDWGDRSQEVELHRFYGVPPYWG 123
             L Y+   +AY +DI +E+L+ AP+   +      DR+ E  +HR+Y   PYWG
Sbjct: 79  AVLRYDTDLDAYVVDITEEQLRDAPARSPEGGDPEDDRAWEEHVHRYYNAAPYWG 133


>ref|YP_766115.1| hypothetical protein RL0506 [Rhizobium leguminosarum bv. viciae
           3841]
 emb|CAK05999.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 130

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 78/113 (69%), Gaps = 2/113 (1%)

Query: 10  HQLIASDRVEGTAVRRANGDMIGHIERLMIDKISGKVSYAVLSFGGFLXIGTXLIPLPWG 69
           H LIASDRVEGT V  A+G  IG IERL+I K+ G+V+YAVLSFGGFL IG    PLPW 
Sbjct: 19  HSLIASDRVEGTRVYGADGKHIGSIERLIIGKLDGRVAYAVLSFGGFLGIGHDHYPLPWE 78

Query: 70  RLHYNPTFEAYELDIEDEELKRAPSFRADKDFDWGDRSQEVELHRFYGVPPYW 122
           +L+Y+   + Y +D+  E+++ APS+  D D  + D  + V  + +YGVPPYW
Sbjct: 79  KLNYDTQLDGYRIDLTKEQIEGAPSYSDDDDTWYNDNGRRV--YDYYGVPPYW 129


>ref|YP_002973995.1| PRC-barrel domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gb|ACS54456.1| PRC-barrel domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 130

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 78/113 (69%), Gaps = 2/113 (1%)

Query: 10  HQLIASDRVEGTAVRRANGDMIGHIERLMIDKISGKVSYAVLSFGGFLXIGTXLIPLPWG 69
           H LIASDRVEGT V  A+G  IG IERL+I K+ G+V+YAVLSFGGFL IG    PLPW 
Sbjct: 19  HSLIASDRVEGTRVYGADGRHIGSIERLIIGKLDGRVAYAVLSFGGFLGIGHDHYPLPWE 78

Query: 70  RLHYNPTFEAYELDIEDEELKRAPSFRADKDFDWGDRSQEVELHRFYGVPPYW 122
           +L+Y+   + Y +D+  E+++ APS+  D D  + D  + V  + +YGVPPYW
Sbjct: 79  KLNYDTQLDGYRIDLTKEQIEGAPSYSDDDDTWYNDNGRRV--YDYYGVPPYW 129