BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0024.p (178 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_578116.1| PRC-barrel [Nitrobacter hamburgensis X14] >gi|9... 189 2e-46 ref|YP_319066.1| hypothetical protein Nwi_2461 [Nitrobacter wino... 170 8e-41 ref|ZP_01046951.1| hypothetical protein NB311A_14195 [Nitrobacte... 164 4e-39 ref|NP_773289.1| hypothetical protein bll6649 [Bradyrhizobium ja... 161 5e-38 ref|YP_004108132.1| PRC-barrel domain-containing protein [Rhodop... 157 6e-37 >ref|YP_578116.1| PRC-barrel [Nitrobacter hamburgensis X14] gb|ABE63656.1| PRC-barrel [Nitrobacter hamburgensis X14] Length = 174 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/183 (57%), Positives = 129/183 (70%), Gaps = 15/183 (8%) Query: 1 MLVKSIIAGLAGTALLATVAVAQTPTDKGDKMSPAATSPAPAASTSATSPTEFKGNWRAS 60 M+ K + L G+ALLAT AVAQT T + MS APAA++S + + G+WR+S Sbjct: 1 MIAKHMTVALIGSALLATAAVAQTSTTTTNTMS------APAATSSESG---YHGDWRSS 51 Query: 61 KVAGLSVYNDKNESVGSINDLLMDKSGTIKAVVIGVGGFLGVGEHLVAVPLDKVKFVSEP 120 K+ GL+VYND NE +GSI+DLL+DKSG I A VIGVGGFLGVGE LVAV DK+KF+ P Sbjct: 52 KMIGLNVYNDANEKLGSISDLLLDKSGKINAAVIGVGGFLGVGERLVAVSFDKIKFLDTP 111 Query: 121 IAYTGASNG--TGGTAKTNTTTGAAPAAAA----KPNPWYPDHAVFNASKDELKAMPEFK 174 + T AS G ++ TTTGAA +A A K NPWYPDHAVFNASK++LKAMPEFK Sbjct: 112 VPSTSASTTAPAGNGMRSETTTGAATSAPAATNTKTNPWYPDHAVFNASKEQLKAMPEFK 171 Query: 175 YST 177 YST Sbjct: 172 YST 174 >ref|YP_319066.1| hypothetical protein Nwi_2461 [Nitrobacter winogradskyi Nb-255] gb|ABA05714.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 169 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 96/178 (53%), Positives = 125/178 (70%), Gaps = 10/178 (5%) Query: 1 MLVKSIIAGLAGTALLATVAVAQTPT-DKGDKMSPAATSPAPAASTSATSPTEFKGNWRA 59 M+ K + A L G+ALLAT A+AQTP + M+ APAA+TS S + + G+WR+ Sbjct: 1 MISKHMTAALIGSALLATAAIAQTPNATMNNNMT------APAAATS--SESGYHGSWRS 52 Query: 60 SKVAGLSVYNDKNESVGSINDLLMDKSGTIKAVVIGVGGFLGVGEHLVAVPLDKVKFVSE 119 SK+ GL+VYND N+ +GSI+DLL+DK+G IKA VIGVGGFLGVGE LVAVP DK+KFV Sbjct: 53 SKMVGLNVYNDTNDKLGSISDLLLDKNGMIKAAVIGVGGFLGVGERLVAVPFDKLKFVDT 112 Query: 120 PIAYTGASNGTGGTAKTNTTTGAAPAAAAKPNPWYPDHAVFNASKDELKAMPEFKYST 177 P A + + G G T ++T A NPW+PDHAVF+A+K +L++MPEFKYST Sbjct: 113 P-AQSASGKGAGTGTTTGSSTSAPATTTTSSNPWFPDHAVFSATKQQLESMPEFKYST 169 >ref|ZP_01046951.1| hypothetical protein NB311A_14195 [Nitrobacter sp. Nb-311A] gb|EAQ35053.1| hypothetical protein NB311A_14195 [Nitrobacter sp. Nb-311A] Length = 172 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 96/179 (53%), Positives = 122/179 (68%), Gaps = 9/179 (5%) Query: 1 MLVKSIIAGLAGTALLATVAVAQTPTDKGDKMSPAATSPAPAASTSATSPTEFKGNWRAS 60 M+ K + A L G+ALL T AVAQTP +P + APAA+TS S + + G WR+S Sbjct: 1 MISKHMTAALIGSALLVTAAVAQTP-----NATPNHSMNAPAATTS--SESGYHGTWRSS 53 Query: 61 KVAGLSVYNDKNESVGSINDLLMDKSGTIKAVVIGVGGFLGVGEHLVAVPLDKVKFVSEP 120 K+ GL+VYND NE +GSI+DLL++K GTIKA VIGVGGFLGVGE LVAV DK+KFV P Sbjct: 54 KMVGLNVYNDTNEKLGSISDLLLNKDGTIKAAVIGVGGFLGVGERLVAVSFDKLKFVDTP 113 Query: 121 IAYTGASNGTGGTAKTNTTTGAA--PAAAAKPNPWYPDHAVFNASKDELKAMPEFKYST 177 + S+ T GT ++T+ A N WYPDHAVF+A+K +L++MPEFKYST Sbjct: 114 VQSASGSSTTTGTTTGSSTSAPATTNTTNTNTNSWYPDHAVFSATKQQLESMPEFKYST 172 >ref|NP_773289.1| hypothetical protein bll6649 [Bradyrhizobium japonicum USDA 110] dbj|BAC51914.1| bll6649 [Bradyrhizobium japonicum USDA 110] Length = 175 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 84/133 (63%), Positives = 95/133 (71%), Gaps = 15/133 (11%) Query: 55 GNWRASKVAGLSVYNDKNESVGSINDLLMDKSGTIKAVVIGVGGFLGVGEHLVAVPLDKV 114 G WR SK+ GL +YND NE++GSINDLLMDKSG IK VIGVGGFLG+GEHLVAVP DK+ Sbjct: 46 GEWRTSKMPGLKIYNDANENIGSINDLLMDKSGAIKIAVIGVGGFLGMGEHLVAVPYDKL 105 Query: 115 KFVSEPIAYTGASNGTGGTAK-----------TNTTTGAAPAAAAKPNPWYPDHAVFNAS 163 KFV+E +AYTGA+ GT AK T A++K WYPDHAVFNAS Sbjct: 106 KFVNEAVAYTGAA-GTNPNAKPATTTTTGAATGTDKTATTVTASSK---WYPDHAVFNAS 161 Query: 164 KDELKAMPEFKYS 176 KDELK MPEFKYS Sbjct: 162 KDELKNMPEFKYS 174 >ref|YP_004108132.1| PRC-barrel domain-containing protein [Rhodopseudomonas palustris DX-1] gb|ADU43399.1| PRC-barrel domain protein [Rhodopseudomonas palustris DX-1] Length = 183 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 90/189 (47%), Positives = 119/189 (62%), Gaps = 20/189 (10%) Query: 1 MLVKSIIAGLAGTALLATVAVAQTPT--DKGDKMSPAATSPAPAASTSATSPTEFKGNWR 58 M K++IAGL GT LLAT A AQ P D + M+ P+A+ + S + G WR Sbjct: 1 MKAKTMIAGLLGTTLLATAAYAQNPAPADNTNTMAK------PSAAATGASQ-QHMGQWR 53 Query: 59 ASKVAGLSVYNDKNESVGSINDLLMDKSGTIKAVVIGVGGFLGVGEHLVAVPLDKVKFVS 118 ASK+ G++VYN NE +G I++LL+D G I+ VVIGVGGFLGVG+ VAV DK+++V+ Sbjct: 54 ASKLMGVNVYNQGNEKLGDISELLIDNQGRIQGVVIGVGGFLGVGQRDVAVAFDKLQWVN 113 Query: 119 EPIAYTGASN--------GTGGTAKTNTTTGAA---PAAAAKPNPWYPDHAVFNASKDEL 167 P++ A+N T + TTTGAA A A+ + WYPDHAV NA+KD+L Sbjct: 114 TPVSSNTAANTQTAPAGSATSTASPAGTTTGAAGSTSATASNADRWYPDHAVLNATKDQL 173 Query: 168 KAMPEFKYS 176 AMPEFKYS Sbjct: 174 TAMPEFKYS 182