BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0020.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773288.1| ABC transporter substrate-binding protein [Brad... 775 0.0 ref|YP_001207588.1| putative ABC branched-chain amino transporte... 712 0.0 ref|YP_001242044.1| putative ABC branched-chain amino transporte... 711 0.0 ref|YP_001772950.1| ABC transporter substrate-binding protein [M... 547 e-153 ref|YP_002502100.1| extracellular ligand-binding receptor [Methy... 545 e-153 >ref|NP_773288.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51913.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 403 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/401 (92%), Positives = 385/401 (96%) Query: 1 MKTLLAAAAAGLALTVSATAANAQISDDVVKIGVLTDMSSLYADATGKGSVAAVEMAVAD 60 M+ L+AA A GLAL + A AQISDDVVKIGVLTDMSSLYADATGKGS+AAVEMAVAD Sbjct: 1 MQKLIAATAVGLALAATCGTAQAQISDDVVKIGVLTDMSSLYADATGKGSLAAVEMAVAD 60 Query: 61 YGGKVKGKPVQVIAADHQNKPDVGVNIARNWYDNDKVDAILDVPTSSVALPISALTREKN 120 YG KV GKPVQV+AADHQNKPDVGVNIARNWYDNDKVDAI DVPTSSVALPISALTREKN Sbjct: 61 YGAKVAGKPVQVVAADHQNKPDVGVNIARNWYDNDKVDAIFDVPTSSVALPISALTREKN 120 Query: 121 RIHINSGGGSSDITGTACSPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFVTADYAFGMA 180 +I+INSGGGSSDITG ACSPNTVHWTYDTYALSNVAGKAMVKRGEDTW+FVTADYAFGMA Sbjct: 121 KININSGGGSSDITGVACSPNTVHWTYDTYALSNVAGKAMVKRGEDTWYFVTADYAFGMA 180 Query: 181 LERDAANVVKESGGKVLGDVRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQA 240 L+RDAANVVKESGGKVLG+VRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQA Sbjct: 181 LQRDAANVVKESGGKVLGEVRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQA 240 Query: 241 SEFGLTQGGQKMIALLQEITDTHSLGIKATQGLIVTDAFYWDMNDETRAFSKRFNEKVGH 300 +EFGLTQGGQKMIALLQEITDTHSLGIKATQGLIVTDAFYWDMN+ETRAFSKRFNEKVGH Sbjct: 241 AEFGLTQGGQKMIALLQEITDTHSLGIKATQGLIVTDAFYWDMNEETRAFSKRFNEKVGH 300 Query: 301 MPTMIQAGLYSATMHYLKAIEAIGTDEAPKVMAQMRATPVNDFFAKNGHIRIDGRMVHDL 360 MPTMIQAGLYSATMHYLKAIEAI TDEAPKVM QMR+TPVNDFFAKNG IRIDGRMVHD+ Sbjct: 301 MPTMIQAGLYSATMHYLKAIEAIKTDEAPKVMEQMRSTPVNDFFAKNGKIRIDGRMVHDM 360 Query: 361 YLFEVKKPEESKGEWDLYKLIATVPGDEAFRPLDKGGCPLV 401 YLFEVKKPEESKGEWDLYKLIATVPGDEAFRPLDKGGCPLV Sbjct: 361 YLFEVKKPEESKGEWDLYKLIATVPGDEAFRPLDKGGCPLV 401 >ref|YP_001207588.1| putative ABC branched-chain amino transporter, periplasmic binding protein [Bradyrhizobium sp. ORS 278] emb|CAL79371.1| putative ABC branched-chain amino transporter, periplasmic binding protein [Bradyrhizobium sp. ORS 278] Length = 403 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/384 (91%), Positives = 365/384 (95%) Query: 19 TAANAQISDDVVKIGVLTDMSSLYADATGKGSVAAVEMAVADYGGKVKGKPVQVIAADHQ 78 TA ISDD+VKIGVLTDMSSLYADATGKGS+ AV+MAV DYGGKVKGK V+V++ADHQ Sbjct: 20 TAHAQTISDDMVKIGVLTDMSSLYADATGKGSLVAVQMAVEDYGGKVKGKKVEVVSADHQ 79 Query: 79 NKPDVGVNIARNWYDNDKVDAILDVPTSSVALPISALTREKNRIHINSGGGSSDITGTAC 138 NKPDVGVNIARNWYDN+KVDAI DVPTSSVALPISALTREKN+IHINSGGGSSDITGT C Sbjct: 80 NKPDVGVNIARNWYDNEKVDAIFDVPTSSVALPISALTREKNKIHINSGGGSSDITGTQC 139 Query: 139 SPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFVTADYAFGMALERDAANVVKESGGKVLG 198 SPNTVHWTYDTYALSNVAGKAMVKRGEDTWFF+TADYAFG ALERDAANVVKE+GGKVLG Sbjct: 140 SPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFITADYAFGQALERDAANVVKEAGGKVLG 199 Query: 199 DVRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQASEFGLTQGGQKMIALLQE 258 DVRHPLNSSDFSSF+LQAQASKAKVV LANAGGDT NALKQA+EFGL Q GQKMIALL E Sbjct: 200 DVRHPLNSSDFSSFVLQAQASKAKVVGLANAGGDTQNALKQAAEFGLAQSGQKMIALLME 259 Query: 259 ITDTHSLGIKATQGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATMHYLK 318 ITD HSLGIK+T GLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATMHYLK Sbjct: 260 ITDVHSLGIKSTSGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATMHYLK 319 Query: 319 AIEAIGTDEAPKVMAQMRATPVNDFFAKNGHIRIDGRMVHDLYLFEVKKPEESKGEWDLY 378 AIEAIGTDEAPKVM QMRATPVNDFFAKNG IRIDGRMVHD+YLFEVKKPEESKG+WDLY Sbjct: 320 AIEAIGTDEAPKVMEQMRATPVNDFFAKNGKIRIDGRMVHDMYLFEVKKPEESKGDWDLY 379 Query: 379 KLIATVPGDEAFRPLDKGGCPLVK 402 KLIATVPGDEAFRPLDKGGCPLVK Sbjct: 380 KLIATVPGDEAFRPLDKGGCPLVK 403 >ref|YP_001242044.1| putative ABC branched-chain amino transporter, periplasmic binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38138.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 403 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/384 (90%), Positives = 365/384 (95%) Query: 19 TAANAQISDDVVKIGVLTDMSSLYADATGKGSVAAVEMAVADYGGKVKGKPVQVIAADHQ 78 TA ISDDVVKIGVLTDMSSLYADATGKGS+ AV+MAV DYGGKVKGK V+V++ADHQ Sbjct: 20 TAQAQTISDDVVKIGVLTDMSSLYADATGKGSLVAVQMAVEDYGGKVKGKKVEVVSADHQ 79 Query: 79 NKPDVGVNIARNWYDNDKVDAILDVPTSSVALPISALTREKNRIHINSGGGSSDITGTAC 138 NKPDVGVNIARNWYDN+KVDAI DVPTSSVALPISALTREKN+IHINSGGGSSDITG+ C Sbjct: 80 NKPDVGVNIARNWYDNEKVDAIFDVPTSSVALPISALTREKNKIHINSGGGSSDITGSQC 139 Query: 139 SPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFVTADYAFGMALERDAANVVKESGGKVLG 198 SPNTVHWTYDTYALSNVAGKAMVKRGEDTWFF+TADYAFG ALERDAANVVKE+GGKVLG Sbjct: 140 SPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFITADYAFGQALERDAANVVKEAGGKVLG 199 Query: 199 DVRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQASEFGLTQGGQKMIALLQE 258 DVRHPLNSSDFSSF+LQAQASKAKVV LANAGGDT NALKQA+EFGL Q GQKMIALL E Sbjct: 200 DVRHPLNSSDFSSFVLQAQASKAKVVGLANAGGDTQNALKQAAEFGLAQSGQKMIALLME 259 Query: 259 ITDTHSLGIKATQGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATMHYLK 318 ITD HSLGIK+T GLIVTDAFYWDMNDETRAFSKRFN+KVGHMPTMIQAGLYSATMHYLK Sbjct: 260 ITDVHSLGIKSTAGLIVTDAFYWDMNDETRAFSKRFNDKVGHMPTMIQAGLYSATMHYLK 319 Query: 319 AIEAIGTDEAPKVMAQMRATPVNDFFAKNGHIRIDGRMVHDLYLFEVKKPEESKGEWDLY 378 AIEAIGTDEAPKVM QMRATPVNDFFAKNG IRIDGRMVHD+YLFEVKKPEESKG+WDLY Sbjct: 320 AIEAIGTDEAPKVMEQMRATPVNDFFAKNGKIRIDGRMVHDMYLFEVKKPEESKGDWDLY 379 Query: 379 KLIATVPGDEAFRPLDKGGCPLVK 402 KLIATVPGDEAFRPLDKGGCPLVK Sbjct: 380 KLIATVPGDEAFRPLDKGGCPLVK 403 >ref|YP_001772950.1| ABC transporter substrate-binding protein [Methylobacterium sp. 4-46] gb|ACA20516.1| ABC transporter substrate-binding protein [Methylobacterium sp. 4-46] Length = 413 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 255/379 (67%), Positives = 305/379 (80%) Query: 25 ISDDVVKIGVLTDMSSLYADATGKGSVAAVEMAVADYGGKVKGKPVQVIAADHQNKPDVG 84 ++D VK+ VLTDMSS+YAD+TG+GS+ A EMAV D+GG + G+P++V++ADHQNKPDVG Sbjct: 33 LTDGKVKLAVLTDMSSVYADSTGRGSLIAAEMAVRDFGGTIGGRPIEVVSADHQNKPDVG 92 Query: 85 VNIARNWYDNDKVDAILDVPTSSVALPISALTREKNRIHINSGGGSSDITGTACSPNTVH 144 NIAR WYD D VD ILDVPTSSVAL + + REK RI I SGGG+SD+TG ACSP +H Sbjct: 93 SNIARQWYDRDGVDVILDVPTSSVALAVQQIAREKGRILIVSGGGTSDLTGPACSPTGLH 152 Query: 145 WTYDTYALSNVAGKAMVKRGEDTWFFVTADYAFGMALERDAANVVKESGGKVLGDVRHPL 204 WTYDTYALS+V+G+A VKRG DTW FVTADYAFG ALERD A VK SGGKVL VR P Sbjct: 153 WTYDTYALSHVSGQAAVKRGLDTWAFVTADYAFGHALERDGAAEVKRSGGKVLSTVRAPF 212 Query: 205 NSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQASEFGLTQGGQKMIALLQEITDTHS 264 ++DFSSFL+QAQ S AK+VA ANAGGDT NA+KQA EFG+ QGGQ ++ALL I D HS Sbjct: 213 ATADFSSFLIQAQGSGAKLVAFANAGGDTVNAIKQAHEFGIVQGGQTLLALLINIDDVHS 272 Query: 265 LGIKATQGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATMHYLKAIEAIG 324 LGI QGL++T AFYWD ++ TRAF+ RF + G MPTM QAG+YSA HYLKA+ G Sbjct: 273 LGIDVAQGLLLTTAFYWDRDEATRAFATRFKQAYGLMPTMHQAGVYSAVTHYLKAVREAG 332 Query: 325 TDEAPKVMAQMRATPVNDFFAKNGHIRIDGRMVHDLYLFEVKKPEESKGEWDLYKLIATV 384 TD+A KV+A+MR PV+D FA+ G +R DGRMVHD+YL +VK P+ESKGEWDLYKL+ATV Sbjct: 333 TDDALKVVAKMREMPVDDMFARGGRVREDGRMVHDMYLMQVKTPQESKGEWDLYKLLATV 392 Query: 385 PGDEAFRPLDKGGCPLVKS 403 PGDEAFRPL +GGCPLVK+ Sbjct: 393 PGDEAFRPLAEGGCPLVKA 411 >ref|YP_002502100.1| extracellular ligand-binding receptor [Methylobacterium nodulans ORS 2060] gb|ACL61797.1| Extracellular ligand-binding receptor [Methylobacterium nodulans ORS 2060] Length = 420 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 258/400 (64%), Positives = 313/400 (78%) Query: 5 LAAAAAGLALTVSATAANAQISDDVVKIGVLTDMSSLYADATGKGSVAAVEMAVADYGGK 64 AA A + +A + Q+SD VKI +LTDMSS+YAD+TG+GSV A EMAV D+GG Sbjct: 19 FAALAVAGPVRAAAPPSAPQLSDGKVKIAILTDMSSVYADSTGRGSVIAAEMAVKDFGGT 78 Query: 65 VKGKPVQVIAADHQNKPDVGVNIARNWYDNDKVDAILDVPTSSVALPISALTREKNRIHI 124 + G+P++V++ADHQNKPD+G NIAR WYD + VD ILDVPTSSVAL + + REK ++ I Sbjct: 79 LGGQPIEVVSADHQNKPDIGSNIARQWYDREGVDVILDVPTSSVALAVQQIAREKGKMLI 138 Query: 125 NSGGGSSDITGTACSPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFVTADYAFGMALERD 184 SGGG+SD+TG ACSP +HWTYDTYALS+V+G A VK+G DTW F+TADYAFG ALERD Sbjct: 139 VSGGGTSDLTGPACSPTGLHWTYDTYALSHVSGHAAVKQGLDTWAFITADYAFGHALERD 198 Query: 185 AANVVKESGGKVLGDVRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQASEFG 244 A VK SGGKVL VR P ++DFSSFL+QAQ S AK++A ANAGGDT NA+KQA EFG Sbjct: 199 GAAEVKRSGGKVLSTVRAPFATADFSSFLIQAQGSGAKLIAFANAGGDTVNAIKQAHEFG 258 Query: 245 LTQGGQKMIALLQEITDTHSLGIKATQGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTM 304 + QGGQK++ALL I D HSLGI+ QGL++T AFYWD +D TRAF+KRF E G +PTM Sbjct: 259 IVQGGQKLLALLINIDDVHSLGIEVAQGLLLTTAFYWDRDDATRAFAKRFKEIYGLIPTM 318 Query: 305 IQAGLYSATMHYLKAIEAIGTDEAPKVMAQMRATPVNDFFAKNGHIRIDGRMVHDLYLFE 364 QAG+YSA HYLKA++A GTD+A KV+A+MR PV D FA G +R DGRMVHD+YL + Sbjct: 319 HQAGVYSAVGHYLKAVQAAGTDDALKVVAKMREMPVEDMFAHGGRVREDGRMVHDMYLMQ 378 Query: 365 VKKPEESKGEWDLYKLIATVPGDEAFRPLDKGGCPLVKSN 404 VK P+ES GEWDLYKLIATVPGDEAFRPL +G CPLVK+ Sbjct: 379 VKTPKESTGEWDLYKLIATVPGDEAFRPLAEGNCPLVKAT 418