BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0017.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773276.1| ATP synthase subunit [Bradyrhizobium japonicum ... 337 1e-90 ref|YP_781002.1| hypothetical protein RPE_2078 [Rhodopseudomonas... 308 5e-82 ref|YP_001242042.1| hypothetical protein BBta_6213 [Bradyrhizobi... 303 2e-80 ref|YP_001207584.1| putative ErfK/YbiS/YcfS/YnhG [Bradyrhizobium... 302 3e-80 ref|YP_570549.1| hypothetical protein RPD_3424 [Rhodopseudomonas... 296 1e-78 >ref|NP_773276.1| ATP synthase subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC51901.1| ATP synthase subunit [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 170/238 (71%), Positives = 190/238 (79%), Gaps = 9/238 (3%) Query: 1 MFNSIKLNSRLAAAAFGALAIGTVAFVNTAAAAPVPIFPFIL-TPPTEAVQP--PVQ--S 55 MFN + A AF A+AI +AF A AAPV +FPF PP A QP P Q Sbjct: 25 MFNLDTFKTYSRAVAFSAVAISAIAFAGPAKAAPVQLFPFFQPLPPMAAPQPMQPYQPYQ 84 Query: 56 MPQAQ----EEDRSVELPARLRRQVVAYPTREAPGTIIIDTPHTYLYLVLGNGQAMRYGI 111 P Q E+ +VE+PAR RRQ V+Y TREAPGTIIIDTP+TYLY VLGNGQA+RYGI Sbjct: 85 APTYQSAPSEDQDAVEMPARFRRQTVSYATREAPGTIIIDTPNTYLYYVLGNGQAVRYGI 144 Query: 112 GIGRDGFTWSGTQTITKKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTI 171 G+GRDGFTWSG Q++TKKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTI Sbjct: 145 GVGRDGFTWSGVQSVTKKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTI 204 Query: 172 YRIHGTNAPETIGTRVSSGCLRLTNADVSDLYSRVSVGTKVIVLPMTDRRADLGSAVR 229 YRIHGTNAP+TIG VSSGC+RLTN DV+DLYSRV+VGTKVIVLPMT+RRA+LG+A R Sbjct: 205 YRIHGTNAPDTIGKHVSSGCIRLTNDDVTDLYSRVNVGTKVIVLPMTERRAELGAATR 262 >ref|YP_781002.1| hypothetical protein RPE_2078 [Rhodopseudomonas palustris BisA53] gb|ABJ06022.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 240 Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 166/242 (68%), Positives = 192/242 (79%), Gaps = 16/242 (6%) Query: 1 MFNS--IKLNSRLAAAAFGALAIGTVAFVNTAAAAPVPIF-----------PFILTPPTE 47 MF + ++LNSR A F ALAIG V + AAA P+P+F PF P Sbjct: 1 MFGTAHVRLNSRRTAIGFAALAIGAVVASSPAAATPLPLFPFLPFPPLQQAPF--QPAPM 58 Query: 48 AVQPPVQSMPQAQEEDRSVELPARLRRQVVAYPTREAPGTIIIDTPHTYLYLVLGNGQAM 107 A QP Q P+A+++ ELPARL+RQVV+Y +RE PGTI+IDTP+TYLY VLGNG+A+ Sbjct: 59 APQPQYQVAPEAEDDGPVAELPARLKRQVVSYASRETPGTIVIDTPNTYLYFVLGNGRAV 118 Query: 108 RYGIGIGRDGFTWSGTQTITKKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYL 167 RYGIG+GRDGFTWSGTQ+ITKKAEWPDWTPPPEMIARQPYLPR MAGGPGNPLGARAMYL Sbjct: 119 RYGIGVGRDGFTWSGTQSITKKAEWPDWTPPPEMIARQPYLPRQMAGGPGNPLGARAMYL 178 Query: 168 GGTIYRIHGTNAPETIGTRVSSGCLRLTNADVSDLYSRVSVGTKVIVLPMTDRRADLGSA 227 GGTIYRIHGTNAP+TIGTRVSSGC+RLTN DV+DLYSRV+VGTKV+V+PM DRRAD + Sbjct: 179 GGTIYRIHGTNAPQTIGTRVSSGCIRLTNEDVADLYSRVNVGTKVVVMPM-DRRADNANG 237 Query: 228 VR 229 R Sbjct: 238 GR 239 >ref|YP_001242042.1| hypothetical protein BBta_6213 [Bradyrhizobium sp. BTAi1] gb|ABQ38136.1| hypothetical protein BBta_6213 [Bradyrhizobium sp. BTAi1] Length = 231 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 162/233 (69%), Positives = 183/233 (78%), Gaps = 6/233 (2%) Query: 1 MFNSIKLNSRLAAAAFGALAIGTVAFVN-TAAAAPVPIFPFILTPPTEAVQPPV---QSM 56 MF S S A GAL T+ T AA+P P+ L PP + +PPV Q++ Sbjct: 1 MFTSGIFRSHFRILA-GALMTATIVTATPTQAASPAPLPFPFLLPPVASFEPPVAEPQTL 59 Query: 57 PQAQEEDRSVELPARLRRQVVAYPTREAPGTIIIDTPHTYLYLVLGNGQAMRYGIGIGRD 116 ++++ + ELPARLRRQVV Y TREAPGT+IIDTP+TYLY VLGNGQAMRYGIG+GRD Sbjct: 60 APSEDDATAYELPARLRRQVVNYATREAPGTVIIDTPNTYLYYVLGNGQAMRYGIGVGRD 119 Query: 117 GFTWSGTQTITKKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTIYRIHG 176 GFTWSGTQ++T+KAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTIYRIHG Sbjct: 120 GFTWSGTQSVTRKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTIYRIHG 179 Query: 177 TNAPETIGTRVSSGCLRLTNADVSDLYSRVSVGTKVIVLPMTDRRADLGSAVR 229 TN P TIGT VSSGC+RLTN DV DLY+RV+VG KVIVLPM DRRADLG R Sbjct: 180 TNQPATIGTHVSSGCIRLTNQDVIDLYARVNVGAKVIVLPM-DRRADLGRITR 231 >ref|YP_001207584.1| putative ErfK/YbiS/YcfS/YnhG [Bradyrhizobium sp. ORS 278] emb|CAL79367.1| conserved hypothetical protein; putative ErfK/YbiS/YcfS/YnhG precursor [Bradyrhizobium sp. ORS 278] Length = 232 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 161/219 (73%), Positives = 176/219 (80%), Gaps = 6/219 (2%) Query: 16 FGALAIGTV-AFVNTAAAAPVPIFPFILTPPTEAVQPPVQSMPQA----QEEDRSVELPA 70 FGAL G + A T AA+P P+ L PP A P + PQ ++E ELPA Sbjct: 15 FGALIAGAIMAATPTYAASPAPLPFPFLLPPPVATYEPPATAPQVVNPQEDEAAPYELPA 74 Query: 71 RLRRQVVAYPTREAPGTIIIDTPHTYLYLVLGNGQAMRYGIGIGRDGFTWSGTQTITKKA 130 RLRRQVV+Y TREAPGTI+IDTP+ YLY VLGNGQAMRYGIG+GRDGFTWSG Q+ITKKA Sbjct: 75 RLRRQVVSYSTREAPGTIVIDTPNKYLYYVLGNGQAMRYGIGVGRDGFTWSGVQSITKKA 134 Query: 131 EWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTIYRIHGTNAPETIGTRVSSG 190 EWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGT+YRIHGTNAPETIGT VSSG Sbjct: 135 EWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTVYRIHGTNAPETIGTHVSSG 194 Query: 191 CLRLTNADVSDLYSRVSVGTKVIVLPMTDRRADLGSAVR 229 C+RLTN DV DLYSRV+VG KVIVLPM +RRADLG R Sbjct: 195 CIRLTNQDVIDLYSRVNVGAKVIVLPM-ERRADLGHVTR 232 >ref|YP_570549.1| hypothetical protein RPD_3424 [Rhodopseudomonas palustris BisB5] gb|ABE40648.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 232 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 144/179 (80%), Positives = 156/179 (87%), Gaps = 1/179 (0%) Query: 51 PPVQSMPQAQEEDRSVELPARLRRQVVAYPTREAPGTIIIDTPHTYLYLVLGNGQAMRYG 110 P VQ++PQ E+ ELPARL+RQ V+Y T EAPGTIIIDTP+T+LY VLG G+A+RYG Sbjct: 54 PQVQALPQRDEDAAPAELPARLKRQTVSYATHEAPGTIIIDTPNTHLYYVLGGGRAIRYG 113 Query: 111 IGIGRDGFTWSGTQTITKKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGT 170 IG+GRDGFTWSGTQ+ITKKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGT Sbjct: 114 IGVGRDGFTWSGTQSITKKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGT 173 Query: 171 IYRIHGTNAPETIGTRVSSGCLRLTNADVSDLYSRVSVGTKVIVLPMTDRRADLGSAVR 229 IYRIHGTNAP TIGT VSSGC+RLTN DVSDLYSRVSVG KVIVLP RRAD S R Sbjct: 174 IYRIHGTNAPSTIGTHVSSGCIRLTNEDVSDLYSRVSVGAKVIVLP-DSRRADNSSGRR 231