BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0014.p (460 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769342.1| hypothetical protein blr2702 [Bradyrhizobium ja... 509 e-142 ref|YP_001991084.1| hypothetical protein Rpal_2087 [Rhodopseudom... 506 e-141 ref|NP_947226.1| hypothetical protein RPA1881 [Rhodopseudomonas ... 504 e-140 ref|YP_487101.1| hypothetical protein RPB_3495 [Rhodopseudomonas... 497 e-138 ref|YP_569095.1| hypothetical protein RPD_1959 [Rhodopseudomonas... 493 e-137 >ref|NP_769342.1| hypothetical protein blr2702 [Bradyrhizobium japonicum USDA 110] dbj|BAC47967.1| blr2702 [Bradyrhizobium japonicum USDA 110] Length = 523 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 246/434 (56%), Positives = 322/434 (74%), Gaps = 4/434 (0%) Query: 19 NSSLLILAAGMLVFGLAAGALYYALRPVTLAIAVGPTGSEDVKLIQGFAQAFTHDGSSVR 78 NS L LA G LVFG AAGALY ALRP L IAVGP GS+D K+++ A AF + +VR Sbjct: 72 NSLLFALAVGFLVFGAAAGALYCALRPEVLRIAVGPPGSDDYKVVEAMADAFRRESRTVR 131 Query: 79 LKPVTTQGSAESIALFTANKVDLAVVRGDLDLPASAESVAILRKNVVVLWAPSGAKGK-- 136 L P+ T G+ ES+AL A K DLAV RGDL++PA A++VA++RKN VVLWAPS GK Sbjct: 132 LSPIKTDGAVESLALLGAGKADLAVGRGDLEMPAEAQTVAVVRKNFVVLWAPSEPAGKGA 191 Query: 137 --RRSAKIKSIDDLAGHKVGVVGSTQANVTLLRVILTESGVNPDKVAVSQFAVNKIADLA 194 +RS KIK + DLAGH+VGV+G T N LLRVIL+ SGV+ +KVAV+ F +I +LA Sbjct: 192 KRKRSPKIKEVADLAGHRVGVIGRTPVNAALLRVILSASGVDAEKVAVTHFGTEQIGELA 251 Query: 195 RDPSLDAYMTVGPLDSKVTAEAITATAAARGEPVFLPVDVSEAMAQKHPRYESEEIAGSI 254 RDP+LDA+M VGPLDSK+T++A+ ATA ARGEP FL ++ SEA+A +HPRYESEEI S+ Sbjct: 252 RDPALDAFMAVGPLDSKITSDAVAATARARGEPKFLAIETSEAIALRHPRYESEEIPPSV 311 Query: 255 FSSSPARPEDKVETVSVNHLIIAQHALSEATVGALDRQLFTLRLQVARDLPAAAKIEKPD 314 F++ PA P DKVETVSV+HLI+A+ ++SE TV A RQLF +R +AR +P AA I KPD Sbjct: 312 FNADPAWPGDKVETVSVSHLIVARKSVSETTVAAFFRQLFAVRQAIARQVPGAAHISKPD 371 Query: 315 TDKDAALPAHQGAAAYIDGTERTFLEKYSDYIWGGILLLSGLGSAAAWLRHYMKRDEREH 374 +KD LP H+GAAA IDG ERTFL++Y DY W G+LLLSG+GSA AWLR Y+ R+ERE Sbjct: 372 LEKDTELPVHRGAAAVIDGNERTFLDRYGDYFWFGLLLLSGIGSAGAWLRRYLNREERED 431 Query: 375 YVTHRDNLLTLISRVRGAETPEELAAMQADADGLLREALDCYDDGAIEDGDLSAIGLTLE 434 +HR +L +++ R AE+ +EL +Q +AD ++ E L+CYDDGA+E+ +L+A GL L+ Sbjct: 432 NTSHRKRILAMVASARTAESNQELLTLQREADAIIAETLECYDDGAVEEEELAAFGLVLD 491 Query: 435 QFHHAVSDRRAVIN 448 +A+++RRA + Sbjct: 492 LLSNAIAERRAALQ 505 >ref|YP_001991084.1| hypothetical protein Rpal_2087 [Rhodopseudomonas palustris TIE-1] gb|ACF00609.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 466 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 265/435 (60%), Positives = 327/435 (75%), Gaps = 12/435 (2%) Query: 21 SLLILAAGMLVFGLAAGALYYALRPVTLAIAVGPTGSEDVKLIQGFAQAFTHDGSSVRLK 80 + +++A G+L ++Y LRPV+L IAVGP G +D+KL+Q AQ+F D ++VRL Sbjct: 30 TFILVAVGVLAL------VFYELRPVSLKIAVGPGGGDDLKLVQALAQSFARDRAAVRLV 83 Query: 81 PVTTQGSAESIALFTANKVDLAVVRGDLDLPASAESVAILRKNVVVLWAPSGA-KGKRRS 139 P+ T G+ SI F +K DLAV R DLDLPA A++VA+LRKNVVVLWAPS A KGK+ Sbjct: 84 PLVTGGATPSIEAFRDHKADLAVTRADLDLPADAQAVAVLRKNVVVLWAPSSAGKGKK-- 141 Query: 140 AKIKSIDDLAGHKVGVVGSTQANVTLLRVILTESGVNPDKVAVSQFAVNKIADLARDPSL 199 IK+I DLAG +VGV+G T ANV L +IL ESGV PDKV QFA ++A++ARDPSL Sbjct: 142 -SIKTITDLAGRRVGVIGRTPANVKLFDIILAESGVAPDKVQKEQFATGQLAEMARDPSL 200 Query: 200 DAYMTVGPLDSKVTAEAITATAAARGEPVFLPVDVSEAMAQKHPRYESEEIAGSIFSSSP 259 DA++ VGPLDSK+T EAI ATA ARGEP FLPVDV +A+A+K+P Y+SEEI GSIFS+ P Sbjct: 201 DAFLAVGPLDSKITGEAIAATAKARGEPRFLPVDVGDAIAKKYPIYDSEEIPGSIFSTQP 260 Query: 260 ARPEDKVETVSVNHLIIAQHALSEATVGALDRQLFTLRLQVARDLPAAAKIEKPDTDKDA 319 ARPEDKV+TVSVNHLIIA+ +LS TV L RQ+F R Q+AR++P A KIE PDT+KDA Sbjct: 261 ARPEDKVDTVSVNHLIIARQSLSSVTVTKLTRQIFAARQQIAREMPLAGKIEAPDTEKDA 320 Query: 320 ALPAHQGAAAYIDGTERTFLEKYSDYIWGGILLLSGLGSAAAWLRHYMKRDEREHYVTHR 379 ALPAH+GAAA+IDGT+RTF+E+ SDYIWG +LLLSGLGSA AW R Y+ RDERE R Sbjct: 321 ALPAHRGAAAFIDGTDRTFMERNSDYIWGLVLLLSGLGSAGAWFRSYLTRDEREAGAKMR 380 Query: 380 DNLLTLISRVRGAETPEELAAMQADADGLLREALDCYDDGAIEDGDLSAIGLTLEQFHHA 439 D L ++S+ R AET E L A+Q + D +LR+ LDCYDDGAIE DL L LEQFHHA Sbjct: 381 DRALAMVSKARKAETLEALDALQHEIDKILRDTLDCYDDGAIE--DLEPFSLVLEQFHHA 438 Query: 440 VSDRRAVINGDKPGL 454 V DRRA ++ PGL Sbjct: 439 VVDRRAALSASGPGL 453 >ref|NP_947226.1| hypothetical protein RPA1881 [Rhodopseudomonas palustris CGA009] emb|CAE27322.1| hypothetical protein RPA1881 [Rhodopseudomonas palustris CGA009] Length = 466 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 263/435 (60%), Positives = 327/435 (75%), Gaps = 12/435 (2%) Query: 21 SLLILAAGMLVFGLAAGALYYALRPVTLAIAVGPTGSEDVKLIQGFAQAFTHDGSSVRLK 80 + +++A G+L ++Y LRPV+L IAVGP G +D+KL+Q AQ+F D ++VRL Sbjct: 30 TFILVAVGVLAL------VFYELRPVSLKIAVGPGGGDDLKLVQALAQSFARDRAAVRLV 83 Query: 81 PVTTQGSAESIALFTANKVDLAVVRGDLDLPASAESVAILRKNVVVLWAPSGA-KGKRRS 139 P+ T G+ SI F +K DLAV R DLDLPA A++VA+LRKNVVVLWAPS A KGK+ Sbjct: 84 PLVTGGATPSIEAFRDHKADLAVTRADLDLPADAQAVAVLRKNVVVLWAPSSAGKGKK-- 141 Query: 140 AKIKSIDDLAGHKVGVVGSTQANVTLLRVILTESGVNPDKVAVSQFAVNKIADLARDPSL 199 IK+I DLAG +VGV+G T ANV L +IL ESGV PDKV QFA ++A++ARDPSL Sbjct: 142 -SIKTITDLAGRRVGVIGRTPANVKLFDIILAESGVAPDKVQKEQFATGQLAEMARDPSL 200 Query: 200 DAYMTVGPLDSKVTAEAITATAAARGEPVFLPVDVSEAMAQKHPRYESEEIAGSIFSSSP 259 DA++ VGPLDSK+T EAI ATA ARGEP FLPVDV +A+A+K+P Y+SEEI GSIFS+ P Sbjct: 201 DAFLAVGPLDSKITGEAIAATAKARGEPRFLPVDVGDAIAKKYPIYDSEEIPGSIFSTQP 260 Query: 260 ARPEDKVETVSVNHLIIAQHALSEATVGALDRQLFTLRLQVARDLPAAAKIEKPDTDKDA 319 ARPEDKV+TVSVNHLI+A+ +LS TV L RQ+F R Q+AR++P A KIE PDT+KDA Sbjct: 261 ARPEDKVDTVSVNHLIVARQSLSSVTVTKLTRQIFAARQQIAREMPLAGKIEAPDTEKDA 320 Query: 320 ALPAHQGAAAYIDGTERTFLEKYSDYIWGGILLLSGLGSAAAWLRHYMKRDEREHYVTHR 379 ALPAH+GAAA+IDGT+RTF+E+ SDYIWG +LLLSGLGSA AW R Y+ RDERE R Sbjct: 321 ALPAHRGAAAFIDGTDRTFMERNSDYIWGLVLLLSGLGSAGAWFRSYLTRDEREAGAKMR 380 Query: 380 DNLLTLISRVRGAETPEELAAMQADADGLLREALDCYDDGAIEDGDLSAIGLTLEQFHHA 439 D L ++++ R AET E L A+Q + D +LR+ LDCYDDGAIE DL L LEQFHHA Sbjct: 381 DRALAMVAKARKAETLEALDALQHEIDKILRDTLDCYDDGAIE--DLEPFSLVLEQFHHA 438 Query: 440 VSDRRAVINGDKPGL 454 V DRRA ++ PGL Sbjct: 439 VMDRRAALSASGPGL 453 >ref|YP_487101.1| hypothetical protein RPB_3495 [Rhodopseudomonas palustris HaA2] gb|ABD08190.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 465 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 264/423 (62%), Positives = 321/423 (75%), Gaps = 7/423 (1%) Query: 25 LAAGMLVFGLAAGAL---YYALRPVTLAIAVGPTGSEDVKLIQGFAQAFTHDGSSVRLKP 81 LA + V L AGAL +Y LRPVTL IAVGP GS+D+KLIQ AQ F D S+VRL P Sbjct: 24 LATALTVIALVAGALGVLFYELRPVTLRIAVGPPGSDDLKLIQALAQTFVRDRSAVRLTP 83 Query: 82 VTTQGSAESIALFTANKVDLAVVRGDLDLPASAESVAILRKNVVVLWAPSGAKGKRRSAK 141 VTT G+ S++ + + DLAV RGDLDLP A++VAILRKNVV LWA G +GK+ A Sbjct: 84 VTTDGATPSLSAWREGRADLAVTRGDLDLPTDAQAVAILRKNVVTLWALPG-RGKKPVA- 141 Query: 142 IKSIDDLAGHKVGVVGSTQANVTLLRVILTESGVNPDKVAVSQFAVNKIADLARDPSLDA 201 +KSI +LAG KVGV+G T ANV LL +IL ESGV+PDKV QFAV IA++ARD L A Sbjct: 142 VKSIAELAGRKVGVIGRTPANVKLLHIILAESGVSPDKVQTEQFAVTAIAEMARDEQLSA 201 Query: 202 YMTVGPLDSKVTAEAITATAAARGEPVFLPVDVSEAMAQKHPRYESEEIAGSIFSSSPAR 261 +++VGPLDSK+TAEAI ATA ARGEP FLP+DV++++A+KHP Y+SEEI GS FSS+PAR Sbjct: 202 FLSVGPLDSKITAEAIAATAKARGEPRFLPIDVADSIAKKHPIYDSEEIPGSTFSSAPAR 261 Query: 262 PEDKVETVSVNHLIIAQHALSEATVGALDRQLFTLRLQVARDLPAAAKIEKPDTDKDAAL 321 PEDKV+TVS+NHLIIA+ ALS + L RQ+F R Q+AR+LP AAKIE PDTDK AAL Sbjct: 262 PEDKVDTVSINHLIIAKSALSSLDIAQLTRQIFAARQQLARELPIAAKIEAPDTDKAAAL 321 Query: 322 PAHQGAAAYIDGTERTFLEKYSDYIWGGILLLSGLGSAAAWLRHYMKRDEREHYVTHRDN 381 PAH GAAA+IDGTERTF+E+ SDYIWG ++LLSGLGSA AW R Y+ RDER RD Sbjct: 322 PAHSGAAAFIDGTERTFMERNSDYIWGLVVLLSGLGSAGAWFRSYVTRDERAAGARMRDR 381 Query: 382 LLTLISRVRGAETPEELAAMQADADGLLREALDCYDDGAIEDGDLSAIGLTLEQFHHAVS 441 L L+++ R A + +EL AMQ + D +LR+ LDCYDDGAI+ DL+ L LEQFHHAV+ Sbjct: 382 ALALVAKARKAHSLDELDAMQLEIDHILRDMLDCYDDGAID--DLAPFNLVLEQFHHAVA 439 Query: 442 DRR 444 DRR Sbjct: 440 DRR 442 >ref|YP_569095.1| hypothetical protein RPD_1959 [Rhodopseudomonas palustris BisB5] gb|ABE39194.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 467 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 263/435 (60%), Positives = 319/435 (73%), Gaps = 7/435 (1%) Query: 23 LILAAGMLVFGLAAGAL---YYALRPVTLAIAVGPTGSEDVKLIQGFAQAFTHDGSSVRL 79 L+LA + V GL AGAL Y LRPVTL IAVGP GS+D+KLIQ AQ F D SSVRL Sbjct: 24 LMLATVLTVVGLVAGALGVLLYELRPVTLRIAVGPQGSDDIKLIQALAQTFARDRSSVRL 83 Query: 80 KPVTTQGSAESIALFTANKVDLAVVRGDLDLPASAESVAILRKNVVVLWAPSGAKGKRRS 139 PV T G+ S+ +T DLAV RGDLDLP A+SVAILRKNVV LW+ G ++S Sbjct: 84 TPVVTDGATPSLGEWTKGNADLAVTRGDLDLPTDAQSVAILRKNVVTLWSVPGKS--KKS 141 Query: 140 AKIKSIDDLAGHKVGVVGSTQANVTLLRVILTESGVNPDKVAVSQFAVNKIADLARDPSL 199 +KSI DLAG KVGV+G T ANV LL+VIL+ESGV PDKV QFA IA++ARD SL Sbjct: 142 GTVKSIADLAGRKVGVIGRTPANVKLLQVILSESGVAPDKVQTEQFATTAIAEMARDESL 201 Query: 200 DAYMTVGPLDSKVTAEAITATAAARGEPVFLPVDVSEAMAQKHPRYESEEIAGSIFSSSP 259 AY+ VGPLDSK TAEAI ATA ARGEP FLP+DV +++A+K+P Y+SEEI GS FS++P Sbjct: 202 AAYLAVGPLDSKTTAEAIAATAKARGEPRFLPIDVGDSIAKKYPIYDSEEIPGSTFSTAP 261 Query: 260 ARPEDKVETVSVNHLIIAQHALSEATVGALDRQLFTLRLQVARDLPAAAKIEKPDTDKDA 319 ARPEDKV+TVSVNHLIIA+ ALS TV L RQ+F R Q+AR+LP A KIE PDTDK A Sbjct: 262 ARPEDKVDTVSVNHLIIAKRALSSVTVAQLTRQIFAARQQLARELPTAGKIEAPDTDKAA 321 Query: 320 ALPAHQGAAAYIDGTERTFLEKYSDYIWGGILLLSGLGSAAAWLRHYMKRDEREHYVTHR 379 ALPAH+GAAA+IDGTERTF+E+ SDYIWG ++LLSGLGSA AW R Y+ RDER R Sbjct: 322 ALPAHRGAAAFIDGTERTFMERNSDYIWGLVVLLSGLGSAGAWFRSYVTRDERAASARMR 381 Query: 380 DNLLTLISRVRGAETPEELAAMQADADGLLREALDCYDDGAIEDGDLSAIGLTLEQFHHA 439 D L ++++ R A + +EL MQ + D ++R+ LDCYDDGAI+ DL+ L L+QFH+A Sbjct: 382 DRALAMVAKARKANSLDELDHMQHEIDRIVRDMLDCYDDGAID--DLAPFNLVLDQFHNA 439 Query: 440 VSDRRAVINGDKPGL 454 + DRR + G+ Sbjct: 440 LVDRRKTLTMPSAGI 454