BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0007.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001207578.1| putative NUDIX hydrolase (modular protein) [...    68   4e-10
ref|YP_783409.1| NUDIX hydrolase [Rhodopseudomonas palustris Bis...    65   5e-09
ref|YP_568330.1| NUDIX hydrolase [Rhodopseudomonas palustris Bis...    64   1e-08
ref|NP_946356.1| NUDIX hydrolase [Rhodopseudomonas palustris CGA...    63   1e-08
ref|YP_001990212.1| NUDIX hydrolase [Rhodopseudomonas palustris ...    63   1e-08

>ref|YP_001207578.1| putative NUDIX hydrolase (modular protein) [Bradyrhizobium sp. ORS
           278]
 emb|CAL79361.1| putative NUDIX hydrolase (modular protein) [Bradyrhizobium sp. ORS
           278]
          Length = 340

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 107/250 (42%), Gaps = 86/250 (34%)

Query: 4   LMNDIREVDWLPLDAALERLSRGYERAFLENVGPIALQA--------------------- 42
           LM+D+R VDWLPLDAA+ERLSR +E+ FLE VGP AL                       
Sbjct: 97  LMDDVRAVDWLPLDAAVERLSRDHEKTFLETVGPYALAGLIRKAKAKPALEPKTVDKAVD 156

Query: 43  ----AALAERERRARARAVAAE------RRRSREAA--------------------VPQV 72
                A+ E+   A    +AAE      RRRSR AA                    +P+ 
Sbjct: 157 KAVDKAVVEKIDNASVEKLAAEKPATAKRRRSRVAAQPVPSELPAAPPVAAELLAPIPEA 216

Query: 73  IDEQEVADAPDVADAAAPAEAPAIDQPPLAQGEPDPPAMAPHDVPVAAPDAA------AE 126
            +  E+   P+VA      E+PA+D P     E  PP       PVAAP+AA      A+
Sbjct: 217 AEPAEI--LPEVASEPVRDESPALDLPEPVASEAAPPKTQ----PVAAPEAAIPERVPAD 270

Query: 127 TER------GAETVIPEQAPPLMHEVAPAGAAPQPAP-----------------RKNLIE 163
            ER        ++++P  + P+  +   +  AP P P                 R++L +
Sbjct: 271 LERVEAVAAAIKSLVPAPSEPVSDDSRQSKDAPTPEPAAELLDSAGADAPDGHGRRSLAQ 330

Query: 164 RVRDWLRRAA 173
           ++R WL RAA
Sbjct: 331 KMRAWLGRAA 340


>ref|YP_783409.1| NUDIX hydrolase [Rhodopseudomonas palustris BisA53]
 gb|ABJ08429.1| NUDIX hydrolase [Rhodopseudomonas palustris BisA53]
          Length = 200

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 37/43 (86%)

Query: 2   RALMNDIREVDWLPLDAALERLSRGYERAFLENVGPIALQAAA 44
           RALM+D++ VDWLPL+AA++RLSRG+ERAFL  VGP AL AA 
Sbjct: 120 RALMDDVKAVDWLPLEAAVQRLSRGHERAFLAEVGPQALYAAG 162


>ref|YP_568330.1| NUDIX hydrolase [Rhodopseudomonas palustris BisB5]
 gb|ABE38429.1| NUDIX hydrolase [Rhodopseudomonas palustris BisB5]
          Length = 211

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 4   LMNDIREVDWLPLDAALERLSRGYERAFLENVGPIALQAAA 44
           LM DIR VDWLPLD A+ERL+R  ERAFL NVGP+ L+AAA
Sbjct: 96  LMKDIRAVDWLPLDQAIERLTRANERAFLANVGPLVLEAAA 136


>ref|NP_946356.1| NUDIX hydrolase [Rhodopseudomonas palustris CGA009]
 emb|CAE26448.1| NUDIX hydrolase [Rhodopseudomonas palustris CGA009]
          Length = 216

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 4   LMNDIREVDWLPLDAALERLSRGYERAFLENVGPIALQAAA 44
           LM DIR VDWLPLD AL+RLSR YE+AFL  VGP+ L++A 
Sbjct: 109 LMKDIRAVDWLPLDEALQRLSRSYEQAFLTEVGPLVLESAG 149


>ref|YP_001990212.1| NUDIX hydrolase [Rhodopseudomonas palustris TIE-1]
 gb|ACE99736.1| NUDIX hydrolase [Rhodopseudomonas palustris TIE-1]
          Length = 216

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 4   LMNDIREVDWLPLDAALERLSRGYERAFLENVGPIALQAAA 44
           LM DIR VDWLPLD AL+RLSR YE+AFL  VGP+ L++A 
Sbjct: 109 LMKDIRAVDWLPLDEALQRLSRSYEQAFLTEVGPLVLESAG 149