BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0021.p (199 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004716760.1| putative transcriptional regulator protein, ... 167 1e-39 gb|EGE55782.1| putative transcriptional regulator protein [Rhizo... 162 2e-38 ref|YP_001976603.1| transcriptional regulator protein [Rhizobium... 162 2e-38 ref|ZP_03525029.1| probable transcriptional regulator protein, A... 162 3e-38 ref|YP_001985225.1| putative AraC family transcriptional regulat... 161 4e-38 >ref|YP_004716760.1| putative transcriptional regulator protein, AraC family [Sinorhizobium fredii GR64] gb|AEI89623.1| probable transcriptional regulator protein, AraC family [Sinorhizobium fredii GR64] Length = 333 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 117/182 (64%) Query: 18 LNLTPIVDLSTGIGQTLLQLVRTSTTGLYDGILVRSPKASALLSEAAIQLILENVPHRLT 77 L+ +P +DLS G G L+QLV GL DG L++SP A L+E I+L++E HR + Sbjct: 151 LDFSPEIDLSVGFGSLLVQLVPVLYAGLRDGTLLQSPIALNHLTETTIELLIEAAQHRYS 210 Query: 78 DRLSRHPLDAPPRYIRRAVEYMRANPHLPLTISDIAATVGVSSRLLQLGFRKIHGTTPIA 137 L R P+ ++RAV+YMRAN PL++ +IA GVS R LQ GFR TTP+A Sbjct: 211 PELCRVAEPPLPKAVKRAVDYMRANIARPLSLEEIATACGVSRRTLQSGFRNFRNTTPLA 270 Query: 138 YLRQVRLEAIHDELSRPENMLPVSEVALKWGFTHMGRFAAVYRTAFGLYPSDTVRRARGF 197 +L+ +RLE++H EL E + V +VALKWGF H GRF+A YR +G+YPS+T+R + Sbjct: 271 FLQHLRLESVHQELMTGEPGISVKQVALKWGFIHRGRFSADYRKRYGVYPSETLRISEAD 330 Query: 198 CS 199 C+ Sbjct: 331 CA 332 >gb|EGE55782.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 347 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 123/195 (63%), Gaps = 1/195 (0%) Query: 1 VVTKVLSATFGSTALEDLNLTPIVDLSTGIGQTLLQLVRTSTTGLYDG-ILVRSPKASAL 59 ++ + ++A + L+L P+VD ST GQ + L +T G+ +G L+ SP A + Sbjct: 151 IIAQTVAAVLETPLTGALDLAPVVDRSTAAGQLIFSLAQTMIIGMRNGGPLLHSPIAISN 210 Query: 60 LSEAAIQLILENVPHRLTDRLSRHPLDAPPRYIRRAVEYMRANPHLPLTISDIAATVGVS 119 L++A L++ VPHRL+ L + PR++RRA+E+M AN PLT+ ++A G+S Sbjct: 211 LTQAFADLVVRLVPHRLSHLLDKKIHLIAPRHVRRAIEFMHANIAQPLTMQNVADAAGIS 270 Query: 120 SRLLQLGFRKIHGTTPIAYLRQVRLEAIHDELSRPENMLPVSEVALKWGFTHMGRFAAVY 179 R L++GFR TTP AYLR +RL+A+ ++L P N P+ ++ LKWGF H GRFAA+Y Sbjct: 271 IRALEVGFRAFKATTPSAYLRTIRLQAVREDLRDPSNRQPLRDICLKWGFFHFGRFAAIY 330 Query: 180 RTAFGLYPSDTVRRA 194 R A+G PSDT RR+ Sbjct: 331 RAAYGENPSDTRRRS 345 >ref|YP_001976603.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gb|ACE89425.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 329 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 123/195 (63%), Gaps = 1/195 (0%) Query: 1 VVTKVLSATFGSTALEDLNLTPIVDLSTGIGQTLLQLVRTSTTGLYDG-ILVRSPKASAL 59 ++ + ++A + L+L P+VD ST GQ + L +T G+ +G L+ SP A + Sbjct: 133 IIAQTVAAVLETPLTGALDLAPVVDRSTAAGQLIFSLAQTMIIGMRNGGPLLHSPIAISN 192 Query: 60 LSEAAIQLILENVPHRLTDRLSRHPLDAPPRYIRRAVEYMRANPHLPLTISDIAATVGVS 119 L++A L++ VPHRL+ L + PR++RRA+E+M AN PLT+ ++A G+S Sbjct: 193 LTQAFADLVVRLVPHRLSHLLDKKIHLIAPRHVRRAIEFMHANIAQPLTMQNVADAAGIS 252 Query: 120 SRLLQLGFRKIHGTTPIAYLRQVRLEAIHDELSRPENMLPVSEVALKWGFTHMGRFAAVY 179 R L++GFR TTP AYLR +RL+A+ ++L P N P+ ++ LKWGF H GRFAA+Y Sbjct: 253 IRALEVGFRAFKATTPSAYLRTIRLQAVREDLRDPSNRQPLRDICLKWGFFHFGRFAAIY 312 Query: 180 RTAFGLYPSDTVRRA 194 R A+G PSDT RR+ Sbjct: 313 RAAYGENPSDTRRRS 327 >ref|ZP_03525029.1| probable transcriptional regulator protein, AraC family [Rhizobium etli GR56] Length = 311 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/194 (43%), Positives = 122/194 (62%), Gaps = 1/194 (0%) Query: 1 VVTKVLSATFGSTALEDLNLTPIVDLSTGIGQTLLQLVRTSTTGLYD-GILVRSPKASAL 59 V+ + + TF L+L P +DLST +G+T+ L T +G+ D G L++SP A A Sbjct: 114 VILQTIGQTFEMPFSGSLDLLPELDLSTPVGRTIGNLTETIISGMRDDGPLLQSPIAMAH 173 Query: 60 LSEAAIQLILENVPHRLTDRLSRHPLDAPPRYIRRAVEYMRANPHLPLTISDIAATVGVS 119 +++A L++ VPHRL+ L + P PR++RRA+E+M+AN P+T+ +A GVS Sbjct: 174 MTQALADLVVRMVPHRLSHFLDKGPALIAPRHVRRAIEFMQANIDQPITMPKVAEAAGVS 233 Query: 120 SRLLQLGFRKIHGTTPIAYLRQVRLEAIHDELSRPENMLPVSEVALKWGFTHMGRFAAVY 179 SR L+ GFR GT+P AYL +RL A +L PE+ + V LKWGF H GRF+AVY Sbjct: 234 SRALETGFRAFKGTSPAAYLLMLRLRAARQDLLDPESKETMKAVCLKWGFFHFGRFSAVY 293 Query: 180 RTAFGLYPSDTVRR 193 +T +G YPSDT +R Sbjct: 294 KTTYGEYPSDTRKR 307 >ref|YP_001985225.1| putative AraC family transcriptional regulator [Rhizobium etli CIAT 652] gb|ACE94675.1| probable transcriptional regulator protein, AraC family [Rhizobium etli CIAT 652] Length = 332 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 121/194 (62%), Gaps = 1/194 (0%) Query: 1 VVTKVLSATFGSTALEDLNLTPIVDLSTGIGQTLLQLVRTSTTGLYD-GILVRSPKASAL 59 V+ + + TF L+L P +DLST +G+T+ L T +G+ D G L+ SP A A Sbjct: 135 VILQTIGQTFEMPFSGSLDLLPELDLSTPVGRTIGNLTETIISGMRDDGPLLESPIAMAH 194 Query: 60 LSEAAIQLILENVPHRLTDRLSRHPLDAPPRYIRRAVEYMRANPHLPLTISDIAATVGVS 119 +++A L++ VPHRL+ L + P PR++RRA+E+M+AN P+T+ +A GVS Sbjct: 195 MTQALADLVVRMVPHRLSHFLEKGPALIAPRHVRRAIEFMQANIDQPITMPKVAEAAGVS 254 Query: 120 SRLLQLGFRKIHGTTPIAYLRQVRLEAIHDELSRPENMLPVSEVALKWGFTHMGRFAAVY 179 SR L+ GFR GT+P AYL +RL A +L PE+ + + LKWGF H GRF+AVY Sbjct: 255 SRALETGFRAFKGTSPAAYLLMLRLRAARQDLLNPESKETMKAICLKWGFFHFGRFSAVY 314 Query: 180 RTAFGLYPSDTVRR 193 +T +G YPSDT +R Sbjct: 315 KTTYGEYPSDTRKR 328