BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0017.p         (157 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001206807.1| putative signal peptide [Bradyrhizobium sp. ...    55   5e-06
ref|YP_568262.1| hypothetical protein RPD_1123 [Rhodopseudomonas...    53   2e-05
ref|YP_002547854.1| hypothetical protein Avi_6139 [Agrobacterium...    48   6e-04
ref|YP_531818.1| hypothetical protein RPC_1942 [Rhodopseudomonas...    47   8e-04
ref|YP_002543618.1| hypothetical protein Arad_1184 [Agrobacteriu...    46   0.002

>ref|YP_001206807.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL78590.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 134

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 19  QHGAGVAAAAPSLTEKVWCRYGQCYDNGGGAAVGGLVGG-LIGGVIAAGAANAAAQQEAA 77
           +H  G     P +  +   +YG  + + G A +GGL  G +IGG +A   A A+  Q   
Sbjct: 50  RHWRGGHDWHPGIGRRHGYQYGYRHHHNGAAVLGGLAAGAIIGGAVANSRAQASESQ--- 106

Query: 78  AAQQHAASCAQRYRSYDAASNTFQAKDGRRYPC 110
                   CAQRYRSYD  S T+   DGRR+ C
Sbjct: 107 ------VYCAQRYRSYDPRSGTYLGNDGRRHSC 133


>ref|YP_568262.1| hypothetical protein RPD_1123 [Rhodopseudomonas palustris BisB5]
 gb|ABE38361.1| BA14K-like [Rhodopseudomonas palustris BisB5]
          Length = 141

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 6/64 (9%)

Query: 48  GAAVGGL-VGGLIGGVIAAGAANAAAQQEAAAAQQHAASCAQRYRSYDAASNTFQAKDGR 106
           GAA+GGL VG +IGG IA+  A A A+   A A      C+QR+RSYD AS T+   DG 
Sbjct: 82  GAAIGGLAVGAIIGGAIASSQAQAQARGSDAVAY-----CSQRFRSYDPASGTYLGYDGM 136

Query: 107 RYPC 110
           R+ C
Sbjct: 137 RHSC 140


>ref|YP_002547854.1| hypothetical protein Avi_6139 [Agrobacterium vitis S4]
 gb|ACM39138.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 157

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 52  GGLVGGLIGGVIAAGAANAAAQQEAAAAQQHAASCAQRYRSYDAASNTFQAKDGRRYPCQ 111
           G ++GGL  G I  GA +A  Q        H   C  RYRSY A+ NTFQ  +G R  C 
Sbjct: 100 GAIIGGLAAGAIIGGALSARPQ----GGNSHTQWCYNRYRSYRASDNTFQPNNGPRRQCV 155

Query: 112 XP 113
            P
Sbjct: 156 SP 157


>ref|YP_531818.1| hypothetical protein RPC_1942 [Rhodopseudomonas palustris BisB18]
 gb|ABD87499.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 128

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 19/119 (15%)

Query: 5   GAMVFSA-PAISAPLQHGAGVAAAAPSLTEKVWCRYGQCYDNGGGAAVG----------- 52
           G++ FS  PA +AP    + V A  P   + V  R+G    +GG    G           
Sbjct: 15  GSLSFSMQPATAAPTMPQSLVKA--PMELQTVQYRHGWHNRHGGSRHGGWRRGYDRRGYG 72

Query: 53  -GLVGGLIGGVIAAGAANAAAQQEAAAAQQHAASCAQRYRSYDAASNTFQAKDGRRYPC 110
            G+VGGL  G +  GA  A +Q   A A    A C+QR++SYD  S T+   DG+R+PC
Sbjct: 73  PGVVGGLAAGALIGGAI-ANSQARGADAD---AYCSQRFKSYDPGSGTYLGYDGQRHPC 127


>ref|YP_002543618.1| hypothetical protein Arad_1184 [Agrobacterium radiobacter K84]
 gb|ACM25692.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 30/58 (51%)

Query: 56  GGLIGGVIAAGAANAAAQQEAAAAQQHAASCAQRYRSYDAASNTFQAKDGRRYPCQXP 113
           G LIGG IA+    AA  + A    +H   C  RYRSY +  NTFQ  +G R  C  P
Sbjct: 104 GALIGGAIASQPRYAAPPRAAGVNPRHVDWCYARYRSYRSYDNTFQPYNGPRQQCYSP 161