BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0009.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_295226.1| LysR family transcriptional regulator [Ralstoni... 295 9e-78 ref|YP_002005109.1| lysr family transcription regulator [Cupriav... 288 1e-75 ref|YP_725601.1| LysR family transcriptional regulator [Ralstoni... 287 1e-75 ref|YP_002981805.1| LysR family transcriptional regulator [Ralst... 287 2e-75 ref|YP_004684873.1| LysR family transcriptional regulator [Cupri... 287 2e-75 >ref|YP_295226.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ60382.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 315 Score = 295 bits (754), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 151/304 (49%), Positives = 194/304 (63%) Query: 1 MHVRDVDLNLFVVFDAIYSEGGVSRACFRLNLTQPAVSHALSRLRAMFDDPLFVRRNHVM 60 M + +DLNLFVVFDAIYSEG ++ A +LNLTQPAVSHAL RLR +FDDPLF RR M Sbjct: 4 MQLSRIDLNLFVVFDAIYSEGSITAAARQLNLTQPAVSHALGRLRGLFDDPLFERRGQGM 63 Query: 61 TPTPLARQIITTVRQALNGLETTLTHTHRFDPAQTPKRFVIGLRNNLEAPMLSALVNRIS 120 PTPLAR + + VR AL TL T FDP T +RF IG+R+ LE+ +L L+ R++ Sbjct: 64 APTPLARSLASEVRSALQSFARTLQDTPHFDPTNTVRRFTIGMRDALESTLLPPLMARVT 123 Query: 121 TVAPLVEIATVRSERNNLERELAAGTLDVAIDTLLPLSAEVRREQILTEHIAVFARRGHP 180 +VAP VEIA +R +R +E EL AGT+D AID LLP+S + Q + + + V ARR HP Sbjct: 124 SVAPQVEIAAIRFDRREMESELLAGTIDAAIDILLPVSPAIHHAQFMADPMIVLARRDHP 183 Query: 181 ELGSRLDKKAYLRMEHVCVTSRRSGLSFEDFQLQRLGLTRTVRLTCQNFATACHVVSRSN 240 + L + YL EHV V+SRR G ED L R+GLTR VRL CQ++A AC VVS ++ Sbjct: 184 LVKKELTLERYLAAEHVHVSSRRRGAGLEDQALHRMGLTRRVRLRCQHYAAACRVVSCTD 243 Query: 241 MLLTASESAASVLEDPGLLQCFPCPFPISPHVNYLYWHATAEDDTTNQWLREQLRAAAAL 300 +L T A + +P + PF + +LYWHA E+D N+WLREQL A + Sbjct: 244 LLATLPLRYARIANEPYANRILSLPFKVPSLELHLYWHAGGENDGANRWLREQLMAVMSS 303 Query: 301 LAGS 304 L G Sbjct: 304 LGGG 307 >ref|YP_002005109.1| lysr family transcription regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ69042.1| putative TRANSCRIPTIONal REGULATOR, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 312 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 149/304 (49%), Positives = 191/304 (62%) Query: 1 MHVRDVDLNLFVVFDAIYSEGGVSRACFRLNLTQPAVSHALSRLRAMFDDPLFVRRNHVM 60 M + +DLNLFVVFDAIYSEG ++ A +LNLTQPAVSHAL RLR +FDDPLF RR M Sbjct: 1 MQLSRIDLNLFVVFDAIYSEGSITAAARQLNLTQPAVSHALGRLRTLFDDPLFERRGQGM 60 Query: 61 TPTPLARQIITTVRQALNGLETTLTHTHRFDPAQTPKRFVIGLRNNLEAPMLSALVNRIS 120 PTPLAR + VR AL TL T FDP T +RF IG+R+ LE+ +L L++R++ Sbjct: 61 APTPLARSLAAEVRSALQSFARTLQDTPHFDPTNTVRRFTIGMRDALESTLLPPLMSRVT 120 Query: 121 TVAPLVEIATVRSERNNLERELAAGTLDVAIDTLLPLSAEVRREQILTEHIAVFARRGHP 180 +AP VEIA +R +R +E EL AGTLD A+D LLP+S + + + + V ARR HP Sbjct: 121 AMAPQVEIAAIRFDRREMESELLAGTLDAALDILLPVSPAIHHAPFMADPMVVLARRDHP 180 Query: 181 ELGSRLDKKAYLRMEHVCVTSRRSGLSFEDFQLQRLGLTRTVRLTCQNFATACHVVSRSN 240 + L + YL EHV V+SRR G ED L R+GLTR VRL CQ++A AC VVS ++ Sbjct: 181 LVKKELTLERYLAAEHVHVSSRRRGAGLEDQALHRMGLTRRVRLRCQHYAAACRVVSCTD 240 Query: 241 MLLTASESAASVLEDPGLLQCFPCPFPISPHVNYLYWHATAEDDTTNQWLREQLRAAAAL 300 +L T A + +P + PF + +LYWHA E+D N+WLREQL A A Sbjct: 241 LLATLPLRYARIANEPYANRLLSLPFKVPSLELHLYWHAGGENDGANRWLREQLMAVMAS 300 Query: 301 LAGS 304 L Sbjct: 301 LGSG 304 >ref|YP_725601.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ92233.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 312 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 149/302 (49%), Positives = 190/302 (62%) Query: 1 MHVRDVDLNLFVVFDAIYSEGGVSRACFRLNLTQPAVSHALSRLRAMFDDPLFVRRNHVM 60 M + +DLNLFVVFDAIYSEG ++ A +LNLTQPAVSHAL RLR +FDDPLF RR M Sbjct: 1 MQLSRIDLNLFVVFDAIYSEGSITAAARQLNLTQPAVSHALGRLRTLFDDPLFERRGQGM 60 Query: 61 TPTPLARQIITTVRQALNGLETTLTHTHRFDPAQTPKRFVIGLRNNLEAPMLSALVNRIS 120 PTPLAR + VR AL TL T FDP T +RF IG+R+ LE+ +L L+ R++ Sbjct: 61 APTPLARSLAAEVRSALQSFARTLQDTPHFDPTNTVRRFTIGMRDALESTLLPPLMARVT 120 Query: 121 TVAPLVEIATVRSERNNLERELAAGTLDVAIDTLLPLSAEVRREQILTEHIAVFARRGHP 180 +AP VEIA +R +R +E EL AGTLD A+D LLP+S + + + + V ARR HP Sbjct: 121 AMAPQVEIAAIRFDRREMESELLAGTLDAALDILLPVSPAIHHAPFMADPMVVLARRDHP 180 Query: 181 ELGSRLDKKAYLRMEHVCVTSRRSGLSFEDFQLQRLGLTRTVRLTCQNFATACHVVSRSN 240 + L + YL EHV V+SRR G ED L R+GLTR VRL CQ++A AC VVS ++ Sbjct: 181 LVKKELTLERYLAAEHVHVSSRRRGAGLEDQALHRMGLTRRVRLRCQHYAAACRVVSCTD 240 Query: 241 MLLTASESAASVLEDPGLLQCFPCPFPISPHVNYLYWHATAEDDTTNQWLREQLRAAAAL 300 +L T A + +P + PF + +LYWHA E+D N+WLREQL A A Sbjct: 241 LLATLPLRYARIANEPYANRLLSLPFKVPSLELHLYWHAGGENDGANRWLREQLMAVMAA 300 Query: 301 LA 302 L Sbjct: 301 LG 302 >ref|YP_002981805.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] ref|ZP_07676624.1| regulatory protein [Ralstonia sp. 5_7_47FAA] gb|ACS63133.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] gb|EFP65196.1| regulatory protein [Ralstonia sp. 5_7_47FAA] Length = 314 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/302 (49%), Positives = 192/302 (63%) Query: 1 MHVRDVDLNLFVVFDAIYSEGGVSRACFRLNLTQPAVSHALSRLRAMFDDPLFVRRNHVM 60 MH+ VDLNLFVVFDAIY+EGG++ A LNLTQPAVSHAL RLR +FDDPLF RR M Sbjct: 1 MHISRVDLNLFVVFDAIYTEGGITAAARTLNLTQPAVSHALGRLRELFDDPLFERRGQGM 60 Query: 61 TPTPLARQIITTVRQALNGLETTLTHTHRFDPAQTPKRFVIGLRNNLEAPMLSALVNRIS 120 PTPLAR +I VR AL G E TL RFDPA + +RF + +R+ LEA +L L+ I+ Sbjct: 61 VPTPLARTLIAEVRSALQGFERTLREGTRFDPATSERRFTLSMRDALEATLLPPLMAAIA 120 Query: 121 TVAPLVEIATVRSERNNLERELAAGTLDVAIDTLLPLSAEVRREQILTEHIAVFARRGHP 180 AP +++ TVR +R LE EL AGT+D A D LLP S +R +LT+ + V AR GHP Sbjct: 121 KEAPRIDVTTVRGDRRQLETELLAGTIDAAADILLPASPAIRHAPLLTDPMVVLARPGHP 180 Query: 181 ELGSRLDKKAYLRMEHVCVTSRRSGLSFEDFQLQRLGLTRTVRLTCQNFATACHVVSRSN 240 L + YL EHV V+SRR G ED +L+RLG R VRL CQ++ AC VVS ++ Sbjct: 181 IANDPLTLERYLACEHVHVSSRRRGAGLEDVELRRLGHERRVRLRCQHYPAACRVVSCTD 240 Query: 241 MLLTASESAASVLEDPGLLQCFPCPFPISPHVNYLYWHATAEDDTTNQWLREQLRAAAAL 300 +L T A + +P P PF + P YLYWH ++ D ++WLR+ + AA A Sbjct: 241 LLATLPIRYARIANEPYGNVMLPLPFNVQPLELYLYWHTNSDQDAASRWLRDHVFAAMAE 300 Query: 301 LA 302 +A Sbjct: 301 VA 302 >ref|YP_004684873.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI76392.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 312 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 148/302 (49%), Positives = 190/302 (62%) Query: 1 MHVRDVDLNLFVVFDAIYSEGGVSRACFRLNLTQPAVSHALSRLRAMFDDPLFVRRNHVM 60 M + +DLNLFVVFDAIYSEG ++ A +LNLTQPAVSHAL R+R +FDDPLF RR M Sbjct: 1 MQLSRIDLNLFVVFDAIYSEGSITAAARQLNLTQPAVSHALGRMRTLFDDPLFERRGQGM 60 Query: 61 TPTPLARQIITTVRQALNGLETTLTHTHRFDPAQTPKRFVIGLRNNLEAPMLSALVNRIS 120 PTPLAR + VR AL TL T FDP T +RF IG+R+ LE+ +L L+ R++ Sbjct: 61 APTPLARSLAAEVRSALQSFARTLQDTPHFDPTNTVRRFTIGMRDALESTLLPPLMARVT 120 Query: 121 TVAPLVEIATVRSERNNLERELAAGTLDVAIDTLLPLSAEVRREQILTEHIAVFARRGHP 180 +AP VEIA +R +R +E EL AGTLD A+D LLP+S + + + + V ARR HP Sbjct: 121 AMAPQVEIAAIRFDRREMESELLAGTLDAALDILLPVSPAIHHAPFMADPMVVLARRDHP 180 Query: 181 ELGSRLDKKAYLRMEHVCVTSRRSGLSFEDFQLQRLGLTRTVRLTCQNFATACHVVSRSN 240 + L + YL EHV V+SRR G ED L R+GLTR VRL CQ++A AC VVS ++ Sbjct: 181 LVKKELTLERYLAAEHVHVSSRRRGAGLEDQALHRMGLTRRVRLRCQHYAAACRVVSCTD 240 Query: 241 MLLTASESAASVLEDPGLLQCFPCPFPISPHVNYLYWHATAEDDTTNQWLREQLRAAAAL 300 +L T A + +P + PF + +LYWHA E+D N+WLREQL A A Sbjct: 241 LLATLPLRYARIANEPYANRLLSLPFKVPSLELHLYWHAGGENDGANRWLREQLMAVMAA 300 Query: 301 LA 302 L Sbjct: 301 LG 302