BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0008.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002355032.1| ABC transporter substrate-binding protein [T... 461 e-127 ref|YP_931624.1| ABC transporter substrate-binding protein [Azoa... 449 e-124 ref|YP_158961.1| LivK, ABC-type branched-chain amino acid transp... 440 e-121 ref|YP_001792612.1| putative ABC transporter substrate-binding p... 437 e-120 ref|YP_001861076.1| extracellular ligand-binding receptor [Burkh... 432 e-119 >ref|YP_002355032.1| ABC transporter substrate-binding protein [Thauera sp. MZ1T] gb|ACK54136.1| ABC transporter substrate-binding protein [Thauera sp. MZ1T] Length = 404 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/407 (53%), Positives = 289/407 (71%), Gaps = 3/407 (0%) Query: 1 MRIRNSIAWPVAAMLAAACAGASAETTGVSDGTVKIGVLTDMGGVFSDLAGAGAVAAAQM 60 M+++ AA A ASA+ +G TVKIGVLTDM G +SDLAGAGAV A QM Sbjct: 1 MQMKKLTTLACAAAFAMLSGAASAQISG---NTVKIGVLTDMSGTYSDLAGAGAVLATQM 57 Query: 61 AIDDFVDQEKPPFKVELISADHQNKPDVATGIARQWYDTGGVDLITDVINSGVALAVSSV 120 AI+DF+ + KP FKVE++SADHQNK D+A+ AR+W++ GVD T+++ + ALAV + Sbjct: 58 AIEDFIAEAKPAFKVEMVSADHQNKADIASNKAREWFEREGVDTATELVTTSTALAVMKI 117 Query: 121 AETKNRMLIVTGSGSMRLTNEQCSPNTISYTWDTYSFTNGQARLVKSLGLGTWYFVAVDY 180 A+ NR+ +++G S +TNEQC+ T+ YT+DTY+ NG A+ V G TW+F+ DY Sbjct: 118 AKEMNRVALMSGPASTPITNEQCNDVTVHYTYDTYALANGTAKAVTQQGGNTWFFLTADY 177 Query: 181 ALGKSLVAEASDAITRSGGTVVGTVYHPISTTDLSSFLLQAQASKAKVIGFANAGADLLN 240 A G++L ++S +T +GG V+G+V HP +D SSFLLQAQAS AK+IG ANAGAD N Sbjct: 178 AFGQALEKDSSAVVTANGGKVLGSVRHPFPASDFSSFLLQAQASGAKIIGLANAGADTTN 237 Query: 241 SITAARDFNITPGQTIVPLVGTITEVNALGAAATQGMLLVEPFYWDLDDRSRQWSRRFFA 300 +I A +F +TP Q++ L+ I++V++LG ATQGM L FYWDLDD++R WS+RFF Sbjct: 238 AIKQAAEFGVTPKQSLAGLLMFISDVHSLGLQATQGMYLTTGFYWDLDDQTRAWSKRFFE 297 Query: 301 KVGKMPNFVQAGAYSAVTNYLKAVQAVKTDDAAAVMQRLKSMPIDDMFARNGRIRADGRM 360 K +MP VQAG YS+V +YL+AVQA TD+A VM ++K+ PI D F +NGRIR DGRM Sbjct: 298 KQKRMPTMVQAGQYSSVLHYLRAVQATGTDEAGKVMAQMKATPIKDFFGKNGRIREDGRM 357 Query: 361 VHDMYLVQVKAPADVKQKWDYYTVKETIPAAEAFQPLSTSKCRLVNQ 407 VHDMYL QVK PA+ K WDYY +++TIPA EAFQPL+ SKC LV + Sbjct: 358 VHDMYLAQVKTPAESKYPWDYYHIRQTIPAEEAFQPLAQSKCPLVKK 404 >ref|YP_931624.1| ABC transporter substrate-binding protein [Azoarcus sp. BH72] emb|CAL92737.1| probable ABC transporter substrate binding protein [Azoarcus sp. BH72] Length = 404 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/387 (54%), Positives = 277/387 (71%), Gaps = 3/387 (0%) Query: 21 GASAETTGVSDGTVKIGVLTDMGGVFSDLAGAGAVAAAQMAIDDFVDQEKPPFKVELISA 80 GA A+ +G TVKIGVLTDM G +SDLAG GAV A QMAI+DFV +EKP FKVE++SA Sbjct: 21 GAHAQFSG---NTVKIGVLTDMSGTYSDLAGQGAVVATQMAIEDFVAKEKPGFKVEMVSA 77 Query: 81 DHQNKPDVATGIARQWYDTGGVDLITDVINSGVALAVSSVAETKNRMLIVTGSGSMRLTN 140 DHQNK D+A+ AR+W++ GVD T+++ + ALAV VA+ N+++++ G GS +TN Sbjct: 78 DHQNKADIASNKAREWFEREGVDTATELVTTSTALAVMKVAKEMNKVVLMNGPGSTPITN 137 Query: 141 EQCSPNTISYTWDTYSFTNGQARLVKSLGLGTWYFVAVDYALGKSLVAEASDAITRSGGT 200 EQC+ ++ YT+DTY+ NG A+ V G W+F+ DYA G++L ++S +T +GG Sbjct: 138 EQCNDVSVHYTYDTYALANGTAKAVTQQGGKNWFFLTADYAFGQALEKDSSAVVTANGGK 197 Query: 201 VVGTVYHPISTTDLSSFLLQAQASKAKVIGFANAGADLLNSITAARDFNITPGQTIVPLV 260 VVG+V HP +D SSFLLQAQAS A++IG ANAGAD N+I A +F ITP Q + L+ Sbjct: 198 VVGSVRHPFPASDFSSFLLQAQASNAQIIGLANAGADTTNAIKQAAEFGITPKQQLAGLL 257 Query: 261 GTITEVNALGAAATQGMLLVEPFYWDLDDRSRQWSRRFFAKVGKMPNFVQAGAYSAVTNY 320 I++V++LG QGM L FYWDL+D +R WS+RFF K +MP VQAG YS+V +Y Sbjct: 258 MFISDVHSLGLKNAQGMFLTTGFYWDLNDETRAWSKRFFDKQKRMPTMVQAGQYSSVMHY 317 Query: 321 LKAVQAVKTDDAAAVMQRLKSMPIDDMFARNGRIRADGRMVHDMYLVQVKAPADVKQKWD 380 LKAV+A TDD VM ++K PI+D FA+NG+IR DGRMVHDMYLVQVK P + K WD Sbjct: 318 LKAVKAAGTDDTTKVMAQMKKTPINDFFAKNGQIREDGRMVHDMYLVQVKKPEESKYPWD 377 Query: 381 YYTVKETIPAAEAFQPLSTSKCRLVNQ 407 YY VK+ IP AEAFQPLS S+C LV + Sbjct: 378 YYHVKQVIPGAEAFQPLSLSRCPLVKK 404 >ref|YP_158961.1| LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Aromatoleum aromaticum EbN1] emb|CAI08060.1| predicted LivK, ABC-type branched-chain amino acid transport systems,periplasmic component [Aromatoleum aromaticum EbN1] Length = 405 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/383 (53%), Positives = 274/383 (71%) Query: 25 ETTGVSDGTVKIGVLTDMGGVFSDLAGAGAVAAAQMAIDDFVDQEKPPFKVELISADHQN 84 ++ +SDG VK+GVLTDM G +SDLAG GAV A +MAI+DF+ EKP FK+E+ISADHQN Sbjct: 23 QSATISDGVVKLGVLTDMSGTYSDLAGPGAVEATRMAIEDFIANEKPDFKIEMISADHQN 82 Query: 85 KPDVATGIARQWYDTGGVDLITDVINSGVALAVSSVAETKNRMLIVTGSGSMRLTNEQCS 144 K D++ AR+W DT VD I D++ + ALAV VA KNR+ +VTG+GS +TNEQC+ Sbjct: 83 KADISANKAREWIDTAQVDAIVDLVTTSTALAVMKVANEKNRISLVTGAGSTPITNEQCN 142 Query: 145 PNTISYTWDTYSFTNGQARLVKSLGLGTWYFVAVDYALGKSLVAEASDAITRSGGTVVGT 204 T+ + +DTYS G A+ V G +WYF+ DYA G SL +D + +SGG V+G+ Sbjct: 143 DTTVHWAYDTYSLPVGTAKAVVQQGGKSWYFITADYAFGHSLEKNTADVVKKSGGKVLGS 202 Query: 205 VYHPISTTDLSSFLLQAQASKAKVIGFANAGADLLNSITAARDFNITPGQTIVPLVGTIT 264 V HP +D SSFLL AQAS A+VIG ANAG D +NSI AR+F ITP Q++ L+ I+ Sbjct: 203 VRHPFPGSDFSSFLLSAQASGAQVIGLANAGNDTINSIKQAREFGITPKQSLAGLLMFIS 262 Query: 265 EVNALGAAATQGMLLVEPFYWDLDDRSRQWSRRFFAKVGKMPNFVQAGAYSAVTNYLKAV 324 +V++LG AT GM L FYWD DD +R WS+R+F K+ +MP VQAG YSAV +YLKAV Sbjct: 263 DVHSLGLDATGGMYLTTGFYWDRDDETRAWSKRYFDKMKRMPTMVQAGDYSAVYHYLKAV 322 Query: 325 QAVKTDDAAAVMQRLKSMPIDDMFARNGRIRADGRMVHDMYLVQVKAPADVKQKWDYYTV 384 ++ TD+A AVM ++++ P++D FA+NG++RADGRMVHDMYL QVK P++ K WDYY + Sbjct: 323 KSAGTDEAKAVMAKMRATPVNDFFAKNGQLRADGRMVHDMYLAQVKKPSESKYPWDYYHI 382 Query: 385 KETIPAAEAFQPLSTSKCRLVNQ 407 ++ IP AEAF P + S C L+ + Sbjct: 383 RQVIPGAEAFIPPAESACPLMKK 405 >ref|YP_001792612.1| putative ABC transporter substrate-binding protein [Leptothrix cholodnii SP-6] gb|ACB35847.1| putative ABC transporter substrate binding protein [Leptothrix cholodnii SP-6] Length = 403 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/379 (53%), Positives = 273/379 (72%) Query: 29 VSDGTVKIGVLTDMGGVFSDLAGAGAVAAAQMAIDDFVDQEKPPFKVELISADHQNKPDV 88 +SD V+IGVLTD+ GV+SD+AG G V A QMAIDDFV +EKP FK+E ISADHQNK DV Sbjct: 23 ISDNLVRIGVLTDLSGVYSDVAGKGTVIATQMAIDDFVAKEKPAFKIESISADHQNKGDV 82 Query: 89 ATGIARQWYDTGGVDLITDVINSGVALAVSSVAETKNRMLIVTGSGSMRLTNEQCSPNTI 148 A AR+W++ +D++++++ + VALAV +A+ KN++++V+G+ S R+TNE C+ T+ Sbjct: 83 AANKAREWFEREKIDVVSELVTTSVALAVQKIAKEKNKVVLVSGAASTRVTNEDCNDVTV 142 Query: 149 SYTWDTYSFTNGQARLVKSLGLGTWYFVAVDYALGKSLVAEASDAITRSGGTVVGTVYHP 208 +T+DTY+ NG A+ V G W+F+ DYA G SL +A D + +GG V+GTV HP Sbjct: 143 HWTYDTYAVANGTAKAVTKAGGKKWFFLTADYAFGHSLEKDAIDVVKANGGEVMGTVRHP 202 Query: 209 ISTTDLSSFLLQAQASKAKVIGFANAGADLLNSITAARDFNITPGQTIVPLVGTITEVNA 268 +D SSFLL+AQ+S A++IG ANAG D +NSI A +F +TP Q + L+ I++V++ Sbjct: 203 FPGSDFSSFLLKAQSSGAQIIGLANAGGDTINSIKQAAEFGVTPKQQLAGLLMFISDVHS 262 Query: 269 LGAAATQGMLLVEPFYWDLDDRSRQWSRRFFAKVGKMPNFVQAGAYSAVTNYLKAVQAVK 328 LG TQ M L E FYW+L+D +R WS+RFF + +MP VQAG YS+V +YLKAV+A Sbjct: 263 LGLKTTQSMYLTEGFYWNLNDDTRAWSKRFFEQAKRMPTMVQAGQYSSVMHYLKAVKAAG 322 Query: 329 TDDAAAVMQRLKSMPIDDMFARNGRIRADGRMVHDMYLVQVKAPADVKQKWDYYTVKETI 388 TDD A VM ++K P++D FA+ G IR DGRMVHDMYL+QVK PA+ WDYY V TI Sbjct: 323 TDDTAKVMAQMKKTPVNDFFAKGGTIREDGRMVHDMYLLQVKKPAESTTPWDYYKVVATI 382 Query: 389 PAAEAFQPLSTSKCRLVNQ 407 PAAEAFQPL+ SKC LV + Sbjct: 383 PAAEAFQPLAASKCALVKK 401 >ref|YP_001861076.1| extracellular ligand-binding receptor [Burkholderia phymatum STM815] gb|ACC74030.1| extracellular ligand-binding receptor [Burkholderia phymatum STM815] Length = 409 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 213/409 (52%), Positives = 294/409 (71%), Gaps = 11/409 (2%) Query: 3 IRNSIAWPVAAMLAAACAGASAETTGVSDGTVKIGVLTDMGGVFSDLAGAGAVAAAQMAI 62 ++NSIA V A+LA++ ++A+ +SD VKIGVLTDM G +S+ +GAGAVAA +MA+ Sbjct: 6 LKNSIAM-VFAVLASS---SNAQQGKISDDVVKIGVLTDMSGSYSEFSGAGAVAAVKMAV 61 Query: 63 DDFVDQ--EKPPFKVELISADHQNKPDVATGIARQWYDTGGVDLITDVINSGVALAVSSV 120 DDF + KP +E++ ADHQNK D+A+ AR+W+DT VD+I D+ NS +ALAVS + Sbjct: 62 DDFGGKVLGKP---IEVVVADHQNKTDLASTKAREWFDTQKVDVIVDLTNSSIALAVSRL 118 Query: 121 AETKNRMLIVTGSGSMRLTNEQCSPNTISYTWDTYSFTNGQARLVKSLGLGTWYFVAVDY 180 A K+++ IVTG+ + RLTNE+CSPNT+ Y D+Y+F NG + + G TW+ VA DY Sbjct: 119 AMEKSKIAIVTGAMTERLTNEECSPNTVHYVADSYAFANGTGKAMVDQGGNTWFIVAADY 178 Query: 181 ALGKSLVAEASDAITRSGGTVVGTVYHPISTTDLSSFLLQAQASKAKVIGFANAGADLLN 240 A G ++ S +T SGG VVG + HP++ +D SSF+LQAQ+S A+VIG ANAG D +N Sbjct: 179 AFGNLMLGRLSTTVTNSGGKVVGYIKHPLAASDFSSFILQAQSSGARVIGLANAGVDTVN 238 Query: 241 SITAARDFNITPG--QTIVPLVGTITEVNALGAAATQGMLLVEPFYWDLDDRSRQWSRRF 298 ++ +A++F IT G Q IV L IT+V+A+G QG+LL PFYWD++D +RQ+S+R+ Sbjct: 239 AMKSAQEFGITRGGKQNIVGLATVITDVHAMGLNIAQGLLLTTPFYWDMNDATRQFSKRY 298 Query: 299 FAKVGKMPNFVQAGAYSAVTNYLKAVQAVKTDDAAAVMQRLKSMPIDDMFARNGRIRADG 358 F++V KMPN VQAG YSAVT+YLKAV+A TD+A AVMQ+++ +PI+D FA+NG IR DG Sbjct: 299 FSRVKKMPNMVQAGDYSAVTHYLKAVEATGTDEAGAVMQKMREIPINDFFAKNGTIREDG 358 Query: 359 RMVHDMYLVQVKAPADVKQKWDYYTVKETIPAAEAFQPLSTSKCRLVNQ 407 RMVHDMYL+QVK PA+ K WDYY + + +PA+ S CRL Q Sbjct: 359 RMVHDMYLMQVKTPAESKYPWDYYKLVKQLPASTVTISPEKSACRLFKQ 407