BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0004.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768895.1| hypothetical protein blr2255 [Bradyrhizobium ja... 331 3e-89 gb|ABW96539.1| putative decarboxylase [Streptomyces spirovertici... 119 2e-25 ref|YP_236021.1| hypothetical protein Psyr_2949 [Pseudomonas syr... 109 2e-22 gb|EGH70041.1| hypothetical protein PSYAR_05735 [Pseudomonas syr... 109 2e-22 ref|YP_001412935.1| carboxymuconolactone decarboxylase [Parvibac... 96 2e-18 >ref|NP_768895.1| hypothetical protein blr2255 [Bradyrhizobium japonicum USDA 110] dbj|BAC47520.1| blr2255 [Bradyrhizobium japonicum USDA 110] Length = 199 Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 160/185 (86%), Positives = 171/185 (92%) Query: 1 VARLPLIDPETTSGEIRASFDRMPVKLNIFRMMAHAEANMIPAMRLANSILHKQKLSAVN 60 VARLPLIDPETTSG+IRASFDRMPVKLNIFRMMAHAEANMIPAMRL NSILHKQKLSAVN Sbjct: 14 VARLPLIDPETTSGDIRASFDRMPVKLNIFRMMAHAEANMIPAMRLGNSILHKQKLSAVN 73 Query: 61 RELLILQAAQLEGGAYEWRQHVPIALGVGVTQAQIDAVERGNYDDAALNASERALLGFGR 120 RELLILQAAQLEGGAYEWRQHVPIALGVG TQAQIDAVER +YD A L+ +ERALL FGR Sbjct: 74 RELLILQAAQLEGGAYEWRQHVPIALGVGCTQAQIDAVERSDYDAAGLSEAERALLKFGR 133 Query: 121 EVVEKVRVGDAAFAGMREHFSDQEIVEAIVALGFYMTMARLTEATETDLDPAAGMAVYEG 180 EVVE VRV +A FA MR HFSDQE+VE+IVALGFYM MAR+TEATETDLDPAAGM VY+G Sbjct: 134 EVVENVRVPEATFAAMRRHFSDQEVVESIVALGFYMMMARVTEATETDLDPAAGMKVYDG 193 Query: 181 GRKRG 185 G+K+G Sbjct: 194 GKKQG 198 >gb|ABW96539.1| putative decarboxylase [Streptomyces spiroverticillatus] Length = 176 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 99/174 (56%), Gaps = 5/174 (2%) Query: 1 VARLPLIDPETTSGEIRASFDRMPVKLNIFRMMAHAEANMIPAMRLANSILHKQKLSAVN 60 +AR+P + T S I ++P L++F +MAHAE P +R + ++L+ L V Sbjct: 1 MARIPYLTSSTASETIAEPLSKLP-SLHVFGLMAHAETVFRPWLRFSGALLNHLALDPVL 59 Query: 61 RELLILQAAQLEGGAYEWRQHVPIALGVGVTQAQIDAVERGNYDDAALNASERALLGFGR 120 REL IL+ QL YEW QHVP+AL VG TQ QIDA++RG+ D AL RA++ F Sbjct: 60 RELAILRVGQL-AARYEWDQHVPLALAVGATQQQIDALDRGDLD--ALEPLPRAVVDFVT 116 Query: 121 EVVEKVRVGDAAFAGMREHFSDQEIVEAIVALGFYMTMARLTEATETDLDPAAG 174 VV V DA ++ + D+E+VE + G Y+ +AR+ D DPAAG Sbjct: 117 GVVRD-EVDDAIYSSVSAFLDDREVVELTLVAGHYLMVARMMTTLRIDPDPAAG 169 >ref|YP_236021.1| hypothetical protein Psyr_2949 [Pseudomonas syringae pv. syringae B728a] gb|AAY37983.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae B728a] Length = 194 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 15 EIRASFDRMPVKLNIFRMMAHAEANMIPAMRLANSILHKQKLSAVNRELLILQAAQLEGG 74 ++R F+++P K+N FRM+ ++ IP + L N+I LS ++E+++L A E Sbjct: 28 QVREKFEKLPTKVNFFRMLGYSPGAFIPVIDLTNAIFRDLTLSDYHKEMMVLLLAAHENV 87 Query: 75 AYEWRQHVPIALGVGVTQAQIDAVERGNYDDA-ALNASERALLGFGREVVEKVRVGDAAF 133 AYEW QHV IA GV Q A+ G +DA A ER LL FG+ +++K + F Sbjct: 88 AYEWEQHVSIAQVAGVRPDQFVAIAEGCLEDATAFKEDERVLLRFGQAIIDKGKAPGVLF 147 Query: 134 AGMREHFSDQEIVEAIVALGFYMTMARLTEATETDLD 170 +HFS QE+ +AI+ +GFY ++ + + +D Sbjct: 148 KHTLQHFSLQELSDAILVIGFYRMLSGYIQTFDIAVD 184 >gb|EGH70041.1| hypothetical protein PSYAR_05735 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 194 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 15 EIRASFDRMPVKLNIFRMMAHAEANMIPAMRLANSILHKQKLSAVNRELLILQAAQLEGG 74 ++R F+++P K+N FRM+ ++ IP + L N+I LS ++E+++L A E Sbjct: 28 QVREKFEKLPTKVNFFRMLGYSPGAFIPVIDLTNAIFRDLTLSDYHKEMMVLLLAAHENV 87 Query: 75 AYEWRQHVPIALGVGVTQAQIDAVERGNYDDA-ALNASERALLGFGREVVEKVRVGDAAF 133 AYEW QHV IA GV Q A+ G +DA A ER LL FG+ +++K + F Sbjct: 88 AYEWEQHVSIAQVAGVRPDQFVAIAEGCLEDATAFKEDERVLLRFGQAIIDKGKAPGVLF 147 Query: 134 AGMREHFSDQEIVEAIVALGFYMTMARLTEATETDLD 170 +HFS QE+ +AI+ +GFY ++ + + +D Sbjct: 148 KHTLQHFSLQELSDAILVIGFYRMLSGYIQTFDIAVD 184 >ref|YP_001412935.1| carboxymuconolactone decarboxylase [Parvibaculum lavamentivorans DS-1] gb|ABS63278.1| Carboxymuconolactone decarboxylase [Parvibaculum lavamentivorans DS-1] Length = 183 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 94/173 (54%), Gaps = 2/173 (1%) Query: 1 VARLPLIDPETTSGEIRASFDRMPVKLNIFRMMAHAEANMIPAMRLANSILHKQKLSAVN 60 +AR+P D +G + ++++P LNIFRM+ H+ + ++L N+IL +L V Sbjct: 1 MARIPYFDTAKATGRAKDVYEKLP-NLNIFRMLGHSGDMIDGFIKLGNAILIHSELDPVL 59 Query: 61 RELLILQAAQLEGGAYEWRQHVPIALGVGVTQAQIDAVERGNYDDAALNASERALLGFGR 120 RE+ I++ L+G +YE QH I+ +G+++ I A+ G D + ++R ++ F Sbjct: 60 REIAIVRVGVLKGASYEVYQHEAISRKLGMSEELIKAIHEGP-DAKIFDETQREVMRFTD 118 Query: 121 EVVEKVRVGDAAFAGMREHFSDQEIVEAIVALGFYMTMARLTEATETDLDPAA 173 +VV+ R DA F + E +++ E ++ +GFY T E + D++ A Sbjct: 119 DVVKNTRASDATFNPLAEKLGYKQLQELVITIGFYTTACYFLETFDVDIEEAG 171