BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0061.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EGP55088.1| transcriptional regulator, LysR family [Agrobacte... 456 e-126 ref|YP_004551422.1| LysR family transcriptional regulator [Sinor... 399 e-109 ref|YP_972210.1| LysR family transcriptional regulator [Acidovor... 225 7e-57 gb|ABR13820.1| PalR [Variovorax sp. Pal2] 215 7e-54 ref|NP_887589.1| LysR family transcriptional regulator [Bordetel... 196 3e-48 >gb|EGP55088.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens F2] Length = 323 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/297 (71%), Positives = 258/297 (86%) Query: 1 MAAQDDEVPLNAIRAFVTVAREGSVTRAASSLGTTQSSVSRYLSVLREYLGADLIERRGR 60 M D +VPLNAIRAFVT+ARE SVTRAA ++G TQSSVSR+L+VL +YLGA L+ERRGR Sbjct: 21 MTEDDQDVPLNAIRAFVTIAREKSVTRAAQAMGVTQSSVSRHLAVLEDYLGAKLMERRGR 80 Query: 61 RSDLTEFGRLFANAVSEPLETVGFTAKRMRRRAAAGSNRIVVRTSLSTFAFSILIPNLQA 120 S+LTEFGRLFAN V+EPL+T+ +TA+RMRR A NRIVVRTSL+TFA+++LIPNLQ Sbjct: 81 NSELTEFGRLFANTVAEPLDTIWYTARRMRRHNRADVNRIVVRTSLATFAYTMLIPNLQK 140 Query: 121 FSSEMGGVIVDVVSSLSPPTSSDDFDILITRDLSVIEPADSWEVYNEELVCVGPPNLVAG 180 FS+EMGG +VDV+SSLS PTSSD FD+LITRDLS+IEPAD WE+YNE++VC+G V G Sbjct: 141 FSNEMGGAVVDVISSLSMPTSSDVFDVLITRDLSIIEPADHWEIYNEQIVCIGASAHVTG 200 Query: 181 RELSIVRSTPILNITSRPDILPTWLRAMNLSSNDIKAGARYDHNYLALPAVMTGKCLLVA 240 ++ SIVRS PILNITSRPDILPTWLR+MNL+S DI +GARYDH+YLALPAV TGKCLLVA Sbjct: 201 KDFSIVRSMPILNITSRPDILPTWLRSMNLTSTDIHSGARYDHHYLALPAVTTGKCLLVA 260 Query: 241 PEIVVSDLVRGGDLQIIPGSRTQSGMQYRAYAVDRSEHPELARSFCRWVTRLCKKST 297 PEIVVSDLVR G ++IPGS+ SGMQYRAY++DRS +P+L+R+FCRW+ RLC+++T Sbjct: 261 PEIVVSDLVRDGLYKVIPGSQAPSGMQYRAYSIDRSGNPDLSRTFCRWLVRLCRQAT 317 >ref|YP_004551422.1| LysR family transcriptional regulator [Sinorhizobium meliloti AK83] gb|AEG57299.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] Length = 302 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/300 (63%), Positives = 236/300 (78%) Query: 1 MAAQDDEVPLNAIRAFVTVAREGSVTRAASSLGTTQSSVSRYLSVLREYLGADLIERRGR 60 M+ +D +VPLNAIRAFV +AR G V+ AA +LGTTQSSVSR+LSVL YLG L+ RRGR Sbjct: 1 MSNEDQDVPLNAIRAFVMIARHGGVSGAARALGTTQSSVSRHLSVLEHYLGEQLLARRGR 60 Query: 61 RSDLTEFGRLFANAVSEPLETVGFTAKRMRRRAAAGSNRIVVRTSLSTFAFSILIPNLQA 120 S LT+FGR F + V + L+TV FTAKRMRR + SNRIVVRTSLSTFA++ILIPNL++ Sbjct: 61 TSGLTDFGRSFVSVVGDSLDTVCFTAKRMRRSQQSASNRIVVRTSLSTFAYTILIPNLES 120 Query: 121 FSSEMGGVIVDVVSSLSPPTSSDDFDILITRDLSVIEPADSWEVYNEELVCVGPPNLVAG 180 FS++ GG +VDV++S++PP + D FDIL+TRDL + EP W+V+ E LVCVG P+ VA Sbjct: 121 FSAQTGGALVDVMTSMAPPAAHDGFDILLTRDLDLAEPGAHWDVHEERLVCVGAPSHVAK 180 Query: 181 RELSIVRSTPILNITSRPDILPTWLRAMNLSSNDIKAGARYDHNYLALPAVMTGKCLLVA 240 + +R+ PIL ITSRPDILP WL AM+LS I+ GARYDH+YLALPAV TG+CLLVA Sbjct: 181 KGAGALRTMPILTITSRPDILPNWLNAMDLSPGQIQLGARYDHHYLALPAVTTGRCLLVA 240 Query: 241 PEIVVSDLVRGGDLQIIPGSRTQSGMQYRAYAVDRSEHPELARSFCRWVTRLCKKSTLAQ 300 PEI+VS LVR G LQI+PGS+T SGMQYRAY VDR+ + LARSFCRW+ RLC+ S A+ Sbjct: 241 PEIIVSGLVRDGVLQIVPGSQTPSGMQYRAYVVDRTPNIVLARSFCRWLARLCRTSVTAE 300 >ref|YP_972210.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gb|ABM34436.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 287 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 121/287 (42%), Positives = 173/287 (60%), Gaps = 3/287 (1%) Query: 8 VPLNAIRAFVTVAREGSVTRAASSLGTTQSSVSRYLSVLREYLGADLIERRGRRSDLTEF 67 +PL A+RAFV V R G TRAAS+LG TQ +VSR+++VL + G L RRG ++T Sbjct: 1 MPLKALRAFVAVGRHGKFTRAASALGITQGAVSRHIAVLEAFAGTALFIRRGATIEMTPA 60 Query: 68 GRLFANAVSEPLETVGFTAKRMRRRAAAGSNRIVVRTSLSTFAFSILIPNLQAFSSEMGG 127 G AV + + T+ T + + ++ +R+ VRTS+ +FA ++++P L AFS+ G Sbjct: 61 GLQLFEAVKDAMSTIELTMQLLAQKGKR-HDRLRVRTSMPSFAMTVVVPALGAFSAA-SG 118 Query: 128 VIVDVVSSLSPPTSSDDFDILITRDLSVIEPADSWEVYNEELVCVGPPNLVAGRELSIVR 187 VD+++SLSPP SDDFD+L+TRDLS + +SWE+ EELVCVG P+ VA V Sbjct: 119 AQVDLITSLSPPLPSDDFDVLVTRDLS-LGGTESWELVREELVCVGSPSQVAAHRSDAVA 177 Query: 188 STPILNITSRPDILPTWLRAMNLSSNDIKAGARYDHNYLALPAVMTGKCLLVAPEIVVSD 247 P++ SRP++L +W A NL + + A YDH +LAL A + G LV P + V D Sbjct: 178 HWPMVASRSRPELLASWALAANLPPDSLHVVATYDHLFLALTAAIGGSGFLVVPRLFVLD 237 Query: 248 LVRGGDLQIIPGSRTQSGMQYRAYAVDRSEHPELARSFCRWVTRLCK 294 +R G LQ+ SG Y AY + S H +LA+ FCRW+ L + Sbjct: 238 QLRDGTLQLADERVVNSGASYVAYLNEMSSHTQLAQDFCRWLKALLR 284 >gb|ABR13820.1| PalR [Variovorax sp. Pal2] Length = 297 Score = 215 bits (547), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 171/289 (59%), Gaps = 3/289 (1%) Query: 7 EVPLNAIRAFVTVAREGSVTRAASSLGTTQSSVSRYLSVLREYLGADLIERRGRRSDLTE 66 EVPL +RAFV V R G+ TRA ++LG TQ +VSR+++ L + G L RRG + T Sbjct: 10 EVPLTPLRAFVAVGRHGNFTRAGAALGVTQGAVSRHIASLEAFAGGRLFHRRGSTVEFTP 69 Query: 67 FGRLFANAVSEPLETVGFTAKRMRRRAAAGSNRIVVRTSLSTFAFSILIPNLQAFSSEMG 126 G AV + + T+ T + + +R +R+ VRTS+ +FA ++++P L A++++ G Sbjct: 70 SGLQLFEAVKDAMSTIEMTMQLLAQRGRK-HDRLKVRTSMPSFAMTVVVPALGAYTAQHG 128 Query: 127 GVIVDVVSSLSPPTSSDDFDILITRDLSVIEPADSWEVYNEELVCVGPPNLVAGRELSIV 186 V +D+++SL+PP SDDFD+LITRDLSV +SWE+ EELVCV P+L+ Sbjct: 129 -VQIDLITSLAPPEPSDDFDVLITRDLSV-PGTESWELMREELVCVASPSLLEKHRARSK 186 Query: 187 RSTPILNITSRPDILPTWLRAMNLSSNDIKAGARYDHNYLALPAVMTGKCLLVAPEIVVS 246 P++ SRPD++ TW A +++ + A YDH +LA+ A + G LV P+++V Sbjct: 187 SGWPLVAARSRPDVIATWAIAAGIATESLYVVATYDHLFLAITAAIGGTGFLVVPKLLVL 246 Query: 247 DLVRGGDLQIIPGSRTQSGMQYRAYAVDRSEHPELARSFCRWVTRLCKK 295 D +R G L + G SG Y AY S H + A FCRW+ + ++ Sbjct: 247 DPLRDGTLVLADGQSIGSGASYLAYVSTHSAHAQSAGDFCRWLKGMLRE 295 >ref|NP_887589.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE31540.1| LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 296 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 107/281 (38%), Positives = 163/281 (58%), Gaps = 3/281 (1%) Query: 9 PLNAIRAFVTVAREGSVTRAASSLGTTQSSVSRYLSVLREYLGADLIERRGRRSDLTEFG 68 PL ++RAFV VAR S T+AA +LG TQ +VS +++ L Y L +RRG LT G Sbjct: 7 PLVSLRAFVAVARHESFTQAAGTLGITQGAVSHHVATLETYADCRLFDRRGSTVALTPAG 66 Query: 69 RLFANAVSEPLETVGFTAKRMRRRAAAGSNRIVVRTSLSTFAFSILIPNLQAFSSEMGGV 128 AV + + T+ T + + +R +R+ VRTS+ +FA ++++P+L +S+ G V Sbjct: 67 LQLYEAVKDAMSTIELTMQLLVQRGHR-HDRLKVRTSMPSFAMTLVVPHLGTYSAAHG-V 124 Query: 129 IVDVVSSLSPPTSSDDFDILITRDLSVIEPADSWEVYNEELVCVGPPNLVAGRELSIVRS 188 VD+++SL+PP D+FD+LI+RDLS + +SWE+ EEL+CVG P + R Sbjct: 125 QVDLITSLAPPQPQDEFDVLISRDLS-LPGTESWELAREELICVGAPAVADAHREQSARH 183 Query: 189 TPILNITSRPDILPTWLRAMNLSSNDIKAGARYDHNYLALPAVMTGKCLLVAPEIVVSDL 248 P++ SRPD++ TW +++ + I A YDH +LA+ + + G LVAP+++V D Sbjct: 184 WPMVAARSRPDLIATWALVHDIAPDAINVVATYDHLFLAVTSAIGGTGFLVAPQLLVLDH 243 Query: 249 VRGGDLQIIPGSRTQSGMQYRAYAVDRSEHPELARSFCRWV 289 + G L SG Y AY S H + AR FCRW+ Sbjct: 244 LGAGTLVPSADPPIASGASYVAYVNAHSPHVQQARQFCRWL 284