BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0060.p         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766678.1| transcriptional regulator [Bradyrhizobium japon...   123   8e-27
ref|YP_002423421.1| XRE family transcriptional regulator [Methyl...    97   1e-18
ref|ZP_01044734.1| probable transcriptional regulator [Nitrobact...    92   3e-17
ref|YP_001372860.1| XRE family transcriptional regulator [Ochrob...    83   1e-14
ref|ZP_06862440.1| transcriptional regulator, XRE family protein...    79   2e-13

>ref|NP_766678.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45303.1| bsr0038 [Bradyrhizobium japonicum USDA 110]
          Length = 93

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 67/86 (77%)

Query: 1  VAYNVRRIRVERGIPQEQLAYDAGVDRSYMSGLERQQANPTIDLLDRLAETLGIAVCELF 60
          VA+NVRRIRV RGI QEQLA+ AG+DRSYMS LERQ  NPTIDLLDR+AETL + + E F
Sbjct: 7  VAWNVRRIRVNRGISQEQLAWKAGIDRSYMSSLERQSKNPTIDLLDRIAETLDVQLSEFF 66

Query: 61 VRPSKGAPPPSTLPKGRKPKPARRKR 86
          V P KGA  P TLPK RKP   RRK+
Sbjct: 67 VLPPKGARSPKTLPKSRKPAGPRRKK 92


>ref|YP_002423421.1| XRE family transcriptional regulator [Methylobacterium
          chloromethanicum CM4]
 gb|ACK85493.1| transcriptional regulator, XRE family [Methylobacterium
          chloromethanicum CM4]
          Length = 86

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 59/78 (75%)

Query: 1  VAYNVRRIRVERGIPQEQLAYDAGVDRSYMSGLERQQANPTIDLLDRLAETLGIAVCELF 60
          VA+N+RR+RV +G+ QE+LA DAGVDR+Y+ GLERQ  NPT+DLLD++AE L + + ELF
Sbjct: 7  VAWNLRRVRVAQGLSQERLAADAGVDRAYLGGLERQAENPTVDLLDKVAEALAVPLGELF 66

Query: 61 VRPSKGAPPPSTLPKGRK 78
          V P  GA  P  L  GR+
Sbjct: 67 VAPEAGAQAPEPLRGGRR 84


>ref|ZP_01044734.1| probable transcriptional regulator [Nitrobacter sp. Nb-311A]
 gb|EAQ37515.1| probable transcriptional regulator [Nitrobacter sp. Nb-311A]
          Length = 86

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 57/80 (71%)

Query: 1  VAYNVRRIRVERGIPQEQLAYDAGVDRSYMSGLERQQANPTIDLLDRLAETLGIAVCELF 60
          VA+N+RR+RV+R + QE LA DAG+DRSY+  LER   NPT++ LD+LA  L +A  EL 
Sbjct: 7  VAWNLRRLRVKRALSQEALAVDAGIDRSYVGRLERGVENPTVETLDKLATALQVAAAELL 66

Query: 61 VRPSKGAPPPSTLPKGRKPK 80
          + P  G  PP+TL KGRK +
Sbjct: 67 LVPKAGEKPPATLRKGRKKR 86


>ref|YP_001372860.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gb|ABS17031.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
          49188]
          Length = 88

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 55/80 (68%)

Query: 1  VAYNVRRIRVERGIPQEQLAYDAGVDRSYMSGLERQQANPTIDLLDRLAETLGIAVCELF 60
          +A+N+R+IR  +GI QE LA DA VDR+ +SG+E    NPTIDLL+RLAE L + + +L 
Sbjct: 7  IAWNLRQIRSSQGITQENLAVDANVDRTAISGIETGDYNPTIDLLERLAEALSVDIVDLV 66

Query: 61 VRPSKGAPPPSTLPKGRKPK 80
           +  +GA  P  +  GRKPK
Sbjct: 67 SKVPEGAQAPRPMRAGRKPK 86


>ref|ZP_06862440.1| transcriptional regulator, XRE family protein [Citromicrobium
          bathyomarinum JL354]
          Length = 86

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 1  VAYNVRRIRVERGIPQEQLAYDAGVDRSYMSGLERQQANPTIDLLDRLAETLGIAVCELF 60
          V  N++R+RV +GI QEQLA+DA +DRS++ G+ER   NP++D LD++A  L + + ELF
Sbjct: 7  VGKNIKRLRVAQGISQEQLAFDASIDRSFLGGIERCDENPSVDTLDKIASVLSVNIAELF 66

Query: 61 VRPSKGAPPPSTLPKGRKPKP 81
          V P+      S L  GRK + 
Sbjct: 67 V-PTAVHENISGLRPGRKKQS 86