BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0059.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAR23259.1| putative porin [Bradyrhizobium sp. ISLU16] 576 e-162 ref|YP_001240634.1| porin domain-containing protein [Bradyrhizob... 515 e-144 ref|NP_771716.1| hypothetical protein bll5076 [Bradyrhizobium ja... 503 e-140 ref|NP_771623.1| hypothetical protein bll4983 [Bradyrhizobium ja... 501 e-140 ref|YP_001239088.1| porin domain-containing protein [Bradyrhizob... 501 e-140 >gb|AAR23259.1| putative porin [Bradyrhizobium sp. ISLU16] Length = 506 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 296/437 (67%), Positives = 342/437 (78%), Gaps = 14/437 (3%) Query: 1 VAGARTRLGNAYTSRSRGDLNIDTRTATEYGTLRTFFE----TGLTWTDATYSGAGTGAT 56 V AR RL N YT++SR DL++DTRTATEYG +RT++E T + A GAT Sbjct: 80 VGAARNRLSNYYTAQSRVDLSVDTRTATEYGVVRTYWEGVNTWTTGGYTGTGTTAVNGAT 139 Query: 57 VYSSIGGVQAPNNANSGAIAGGTVGVYSAFIQFAGFTIGKAISQFSVPWTNYPANNYDDL 116 Y++ Q ++ G++GVY AFIQFAG TIGKA SQF+ PW NYPAN++D L Sbjct: 140 SYTTSIASQ---------VSAGSLGVYYAFIQFAGLTIGKAQSQFTAPWANYPANSFDGL 190 Query: 117 PGGTGWVTGVNQFTYTADFGQGITASFSAQDQVAHATTNVWNVSAATAAGLAAGAYGVND 176 PGG GW V QFTYTADFGQGI+ASFSAQDQVA+ TN+WNVS ATAAGLA GAYG ND Sbjct: 191 PGGGGWEP-VTQFTYTADFGQGISASFSAQDQVANYQTNIWNVSGATAAGLATGAYGAND 249 Query: 177 IAGTATPDFISMLRIDQTWGLFQASLAAHDNHAAYYGGDETTGHPSDKWGWATQLALSIK 236 GT PD ++MLR+DQ WGLFQAS AAHDNHA YYG D TTGHP DKWGWA QLALSIK Sbjct: 250 FGGTRAPDLVAMLRVDQAWGLFQASAAAHDNHANYYGADGTTGHPGDKWGWAGQLALSIK 309 Query: 237 NIPTGPGDTINMSGAYTRGASRYNFNENMSTTYAMYGGTGLPGVYQGIGLAGLSDSVFVN 296 NIPTG GDTINMSG YT GASRYNF MS+T+AMYGGT PG YQ +GLAGLSDSVFV Sbjct: 310 NIPTGAGDTINMSGVYTNGASRYNFQSYMSSTFAMYGGTSAPGAYQSVGLAGLSDSVFVT 369 Query: 297 GSAQELTTTYGFRAGYTHNWDAYWNTGIYGGWGAVRYSSIAKSYICGAFIAGLSLSSGLA 356 G+ Q+LTTTYG++ GYTHNWD +WN+ +YGG GAVRY++ AK YICGA +A L+LS+GLA Sbjct: 370 GAGQQLTTTYGYQGGYTHNWDPHWNSSVYGGLGAVRYNNTAKGYICGAVVASLALSTGLA 429 Query: 357 GCNPDYNYGALGLITRWTPVKNLTFSADMAYTMLDQKYAGGSTVTLPAQASIAKPAAVYE 416 GCNPD+NYG +GL+TRWTPVKNL+F+AD+AY MLDQKYA GSTV LP QASIAKP YE Sbjct: 430 GCNPDFNYGVVGLVTRWTPVKNLSFTADLAYVMLDQKYASGSTVALPLQASIAKPGTAYE 489 Query: 417 LKDQSTVTLLLRAQRNW 433 LKDQ+ +TLLLRAQRNW Sbjct: 490 LKDQNALTLLLRAQRNW 506 >ref|YP_001240634.1| porin domain-containing protein [Bradyrhizobium sp. BTAi1] gb|ABQ36728.1| putative exported protein of unknown function with porin precursor domain [Bradyrhizobium sp. BTAi1] Length = 521 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 275/444 (61%), Positives = 319/444 (71%), Gaps = 14/444 (3%) Query: 1 VAGARTRLGNAYTSRSRGDLNIDTRTATEYGTLRTFFETGLTWTDATYSGAGTGATV--Y 58 V+GA RL N + SR+R DLNIDTRTATEYG +RT+F+ TWT TY G G+ A Y Sbjct: 81 VSGANNRLSNYFYSRARQDLNIDTRTATEYGVVRTYFDATFTWTSGTYGGTGSAAGGTAY 140 Query: 59 SSIGGVQAPN---------NANSGAIAGGTVGVYSAFIQFAGFTIGKAISQFSVPWTNYP 109 SS G+ A N G IAGG++GVY AFIQFAGFT+GKA+SQF PWTNYP Sbjct: 141 SSAIGLNAAGTATAGATSVNPTDGGIAGGSLGVYYAFIQFAGFTMGKAVSQFDAPWTNYP 200 Query: 110 ANNYDDLPGGTGWVTGVNQFTYTADFGQGITASFSAQDQVAHATTNVWNVSAATAAGLAA 169 NN+D L GG G VTGVNQFTYTADFG GITA+ SAQD + TN+WNVS TAAG+ Sbjct: 201 GNNFDGLWGGGGTVTGVNQFTYTADFGSGITAAISAQDATQYYQTNLWNVSGITAAGIIG 260 Query: 170 GAYGVNDIAGTATPDFISMLRIDQTWGLFQASLAAHDNHAAYYGGDETTGHPSDKWGWAT 229 GAYG N G PD + M+R+DQ WGLFQAS AAHDNH YYG ET+GHP DKWGWA Sbjct: 261 GAYGSNSYGGNVAPDIVGMVRVDQAWGLFQASFAAHDNHTGYYGASETSGHPGDKWGWAA 320 Query: 230 QLALSIKNIPTGPGDTINMSGAYTRGASRYNFNENMSTTYAMYGGTGLPGVYQGIGLAGL 289 QLALSIKNIPTGPGDTI++ G YT GASRYN + TTYAMYGG+ PGVY + AGL Sbjct: 321 QLALSIKNIPTGPGDTISIQGVYTNGASRYNAQSLVPTTYAMYGGSSTPGVYGTLAFAGL 380 Query: 290 SDSVFVNGSAQELTTTYGFRAGYTHNWDAYWNTGIYGGWGAVRYSSIAKSYICGAFIAGL 349 SDSV+VNG Q+LTTTYGFR YTHNW WN+ IYG W AV Y++ AK ICG+ Sbjct: 381 SDSVYVNGGEQQLTTTYGFRGAYTHNWSPTWNSAIYGSWAAVSYNNTAKGLICGSAAMTT 440 Query: 350 SLSSGLAGCNPDYNYGALGLITRWTPVKNLTFSADMAYTMLDQKYAGGSTVTLPAQASIA 409 +G CNPD+N +LG+ITRWTPVKNLTFSAD+A+T LDQKY G + P A IA Sbjct: 441 IAGAGFT-CNPDFNISSLGVITRWTPVKNLTFSADVAWTNLDQKYTG--NIAYPGSAGIA 497 Query: 410 KPAAVYELKDQSTVTLLLRAQRNW 433 KPAA Y+LKDQ++V+LLLRAQRN+ Sbjct: 498 KPAATYQLKDQNSVSLLLRAQRNF 521 >ref|NP_771716.1| hypothetical protein bll5076 [Bradyrhizobium japonicum USDA 110] dbj|BAC50341.1| bll5076 [Bradyrhizobium japonicum USDA 110] Length = 582 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 257/448 (57%), Positives = 309/448 (68%), Gaps = 19/448 (4%) Query: 3 GARTRLGNAYTSRSRGDLNIDTRTATEYGTLRTFFETGLTWTDATYSGAG--TGATVYSS 60 GAR RL N YT R+R DLNIDTRTATEYG +RTFF+ +WT Y G G TG T YS Sbjct: 137 GARNRLTNYYTMRAREDLNIDTRTATEYGVVRTFFDGVFSWTTGNYVGTGSATGGTAYSG 196 Query: 61 IGGVQAPNNANSGAIAG---------------GTVGVYSAFIQFAGFTIGKAISQFSVPW 105 + P A + A+ G G++GVY AFIQFAGFT+GKA+SQF PW Sbjct: 197 ALAINTPVGAAAPALFGSGGGSVNGTDGNTSAGSLGVYYAFIQFAGFTMGKAVSQFDAPW 256 Query: 106 TNYPANNYDDLPGGTGWVTGVNQFTYTADFGQGITASFSAQDQVAHATTNVWNVSAATAA 165 TNYP NN+D L GG+G VTGVNQF+YTADFGQGITA+FSA+D ++ N++ ATAA Sbjct: 257 TNYPGNNFDGLVGGSGTVTGVNQFSYTADFGQGITAAFSAEDATSYYQAGNVNLTGATAA 316 Query: 166 GLAAGAYGVNDIAGTATPDFISMLRIDQTWGLFQASLAAHDNHAAYYGGDETTGHPSDKW 225 G+ GA G N I G+ +P+ + M+R+DQ WGLFQAS+AAHDNH YYG E TGHP DKW Sbjct: 317 GIFGGAVGANAIGGSRSPNLVGMVRVDQAWGLFQASVAAHDNHVGYYGPSEVTGHPDDKW 376 Query: 226 GWATQLALSIKNIPTGPGDTINMSGAYTRGASRYNFNENMSTTYAMYGGTGLPGVYQGIG 285 GWA QLALSIKNIPTG GD IN+S YT GA+RYNF +TY MYG +GL G Y + Sbjct: 377 GWAVQLALSIKNIPTGAGDVINVSAVYTDGATRYNFQNLAGSTYVMYGSSGLAGAYGSVA 436 Query: 286 LAGLSDSVFVNGSAQELTTTYGFRAGYTHNWDAYWNTGIYGGWGAVRYSSIAKSYICGAF 345 D+VFV G QE T+GFR YTHNWD YWNT IYG + ++ S AK+++CGA Sbjct: 437 AVTAPDTVFVTGGQQETIKTWGFRGAYTHNWDPYWNTAIYGAYAQAQFGSGAKTFLCGAG 496 Query: 346 IAGLSLSSGLAGCNPDYNYGALGLITRWTPVKNLTFSADMAYTMLDQKYAGGSTVTLPAQ 405 GL GCNPD+N G +G+ITRWTPVKNLTFSAD+A+T +DQKYAG T+ Sbjct: 497 GLLTVGQPGLTGCNPDFNIGQVGIITRWTPVKNLTFSADLAWTNVDQKYAG--TIAAGLA 554 Query: 406 ASIAKPAAVYELKDQSTVTLLLRAQRNW 433 A AKPAA YE+KDQ+++ LLLRAQRNW Sbjct: 555 AVPAKPAATYEVKDQNSLVLLLRAQRNW 582 >ref|NP_771623.1| hypothetical protein bll4983 [Bradyrhizobium japonicum USDA 110] dbj|BAC50248.1| bll4983 [Bradyrhizobium japonicum USDA 110] Length = 518 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 260/446 (58%), Positives = 303/446 (67%), Gaps = 21/446 (4%) Query: 1 VAGARTRLGNAYTSRSRGDLNIDTRTATEYGTLRTFFETGLTWTDAT------------Y 48 V A RL N Y+ R+R DLNIDTRTATEYG +RT+F+ TWT Y Sbjct: 81 VFAANNRLTNYYSMRAREDLNIDTRTATEYGVVRTYFDAVFTWTTGNYGGTGSGTGATQY 140 Query: 49 SGA-GTGATVYSSIGGVQAPNNANSGAIAGGTVGVYSAFIQFAGFTIGKAISQFSVPWTN 107 SG G A G N G ++GG +GVY AFIQFAGFT+GKA+SQF PW N Sbjct: 141 SGTIGLNAAGTGLTGSGGGNVNGTDGNLSGGALGVYYAFIQFAGFTMGKAVSQFDAPWIN 200 Query: 108 YPANNYDDLPGGTGWVTGVNQFTYTADFGQGITASFSAQDQVAHATTNVWNVSAATAAGL 167 YP NN+D L GG+G GV QFTYTADFGQG+TA+FSAQDQ TN+WN + + G+ Sbjct: 201 YPGNNFDQLVGGSGTTNGVTQFTYTADFGQGVTAAFSAQDQTQVFQTNIWNTAGMSTTGV 260 Query: 168 AAGAYGVNDIAGTATPDFISMLRIDQTWGLFQASLAAHDNHAAYYGGDETTGHPSDKWGW 227 GAYG ND+ GT PD + M+R+DQ WGLFQAS+AAHDNH YYG E TGHP DKWGW Sbjct: 261 LGGAYGSNDLGGTRAPDLVGMVRVDQAWGLFQASVAAHDNHVGYYGASEVTGHPEDKWGW 320 Query: 228 ATQLALSIKNIPTGPGDTINMSGAYTRGASRYNFNENMSTTYAMYGGTGLPGVYQGIGLA 287 A QLAL IKNIPTG GD IN+SG YT GASRYNF E +T+Y+M+G + YQ IG A Sbjct: 321 AVQLALQIKNIPTGAGDVINLSGVYTDGASRYNFQELAATSYSMFGSSN--AAYQSIGFA 378 Query: 288 GLSDSVFVNGSAQELTTTYGFRAGYTHNWDAYWNTGIYGGWGAVRYSSIAKSYICGAFIA 347 G+SD+VF G ELT TYGFR YTHNW YWNT +YG W AV YS AK ICG+ A Sbjct: 379 GVSDAVFGPGGGLELTKTYGFRGAYTHNWSPYWNTALYGAWAAVNYSGTAKGLICGS--A 436 Query: 348 GLSLSSGLAGCNPDYNYGALGLITRWTPVKNLTFSADMAYTMLDQKYAGGSTVTLPAQAS 407 + +G CNPD+N G +G+ITRWTPVKNLTFSAD Y+ LDQKY+G +T PA Sbjct: 437 AFATLTGT--CNPDFNIGQVGVITRWTPVKNLTFSADFTYSHLDQKYSG--VITTPALTG 492 Query: 408 IAKPAAVYELKDQSTVTLLLRAQRNW 433 +AKPAA YELKDQ T +LLLRAQRNW Sbjct: 493 VAKPAATYELKDQDTYSLLLRAQRNW 518 >ref|YP_001239088.1| porin domain-containing protein [Bradyrhizobium sp. BTAi1] gb|ABQ35182.1| putative exported protein of unknown function with porin precursor domain [Bradyrhizobium sp. BTAi1] Length = 498 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 259/432 (59%), Positives = 310/432 (71%), Gaps = 15/432 (3%) Query: 2 AGARTRLGNAYTSRSRGDLNIDTRTATEYGTLRTFFETGLTWTDATYSGAGTGATVYSSI 61 AGA RL N Y RSR +LNIDTRTATEYG +RT+FET + WT +Y+GAG GAT Y+ Sbjct: 82 AGADNRLSNRYQMRSRENLNIDTRTATEYGVVRTYFETVMNWTSGSYAGAGAGATSYTG- 140 Query: 62 GGVQAPNNANSGAIAGGTVGVYSAFIQFAGFTIGKAISQFSVPWTNYPANNYDDLPGGTG 121 AI+GG++GVY AFIQFAGFT+GKA+S F PWTNYP NN+D L GG+G Sbjct: 141 -----------DAISGGSIGVYYAFIQFAGFTMGKAVSTFDAPWTNYPGNNFDGLVGGSG 189 Query: 122 WVTGVNQFTYTADFGQGITASFSAQDQVAHATTNVWNVSAATAAGLAAGAYGVNDIAGTA 181 GVNQFTYTADFGQGI+A+ S +DQ TTN+WN S TAAG+ G+YG + GT Sbjct: 190 SNNGVNQFTYTADFGQGISAAVSLEDQTQFFTTNIWNTSGITAAGVLGGSYGASAFGGTV 249 Query: 182 TPDFISMLRIDQTWGLFQASLAAHDNHAAYYGGDETTGHPSDKWGWATQLALSIKNIPTG 241 PD I M+RIDQ WGLFQAS AAHDNHAAYYG ET+GHPSDKWGWA QL+LS+KNIPTG Sbjct: 250 APDIIGMVRIDQAWGLFQASFAAHDNHAAYYGAAETSGHPSDKWGWAAQLSLSVKNIPTG 309 Query: 242 PGDTINMSGAYTRGASRYNFNENMSTTYAMYGGTGLPGVYQGIGLAGLSDSVFVNGSAQE 301 GD +N+ YT GASRYNF ST+Y+MYG TG+ G YQ IG AG+ D+VF G+ Sbjct: 310 AGDVLNLQAVYTDGASRYNFQSLASTSYSMYGSTGVTGAYQSIGFAGVGDAVFGTGTGLS 369 Query: 302 LTTTYGFRAGYTHNWDAYWNTGIYGGWGAVRYSSIAKSYICGAFIAGLSLSSGLAGCNPD 361 T+G R +THNW+ WN+ +YG + VRY S IC A L++G + CNPD Sbjct: 370 TVQTWGMRGAFTHNWNPNWNSALYGAYAQVRYGQTGASLICAGIAATGMLTAG-STCNPD 428 Query: 362 YNYGALGLITRWTPVKNLTFSADMAYTMLDQKYAGGSTVTLPAQASIAKPAAVYELKDQS 421 +N G +GLITRWTPVKNLTFSAD+ Y+ LDQKY+G T PA AS AKPAA+Y+LKDQ Sbjct: 429 FNLGQIGLITRWTPVKNLTFSADVTYSHLDQKYSG--TAIAPAVASTAKPAAIYQLKDQD 486 Query: 422 TVTLLLRAQRNW 433 TV++LLRAQRNW Sbjct: 487 TVSMLLRAQRNW 498