BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0056.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EGP55093.1| oligopeptide/dipeptide ABC transporter, ATP-bindi... 362 4e-98 ref|NP_771183.1| ABC transporter ATP-binding protein [Bradyrhizo... 356 3e-96 ref|ZP_05784132.1| oligopeptide transport ATP-binding protein Op... 347 2e-93 ref|NP_387074.1| putative transport system ATP-binding ABC trans... 345 6e-93 ref|YP_001328521.1| oligopeptide/dipeptide ABC transporter ATPas... 344 1e-92 >gb|EGP55093.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Agrobacterium tumefaciens F2] Length = 345 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 189/312 (60%), Positives = 221/312 (70%) Query: 1 VRELLTIEQLSVAFGETRAVRSIDLQVREGEAVGIIGESGSGKSVTWLAALGLLPPSVAI 60 VR L IE L+VAF T +R ID V +GEA+GI+GESGSGKSVTWLAALGLLP + I Sbjct: 16 VRPFLEIEALNVAFDGTPVLRGIDFAVGQGEAIGIVGESGSGKSVTWLAALGLLPKTAVI 75 Query: 61 SGRVLLDDQELLEAPTERLSRIRGKRIAMIVQDAQSALNPVLTVGRQVIEVLQLHRGMGE 120 SG V L+ +ELL A + L RIRG+RIAMI QD S+LNPV+ VGRQ+ EVL H G Sbjct: 76 SGNVRLEGKELLSAGSAELDRIRGRRIAMIFQDPSSSLNPVIRVGRQIGEVLSRHCGFSG 135 Query: 121 RASRAEAKRLFDLVRIPDAVRRLKFYPHELSGGQNQRVMIAMALAGGPELLIADEPTTAL 180 RA AEA+RLF+LV +PDA RRL YPHELSGGQNQRVMIAMALAG P+LLIADEPTTAL Sbjct: 136 RAIAAEARRLFELVGMPDATRRLDAYPHELSGGQNQRVMIAMALAGKPDLLIADEPTTAL 195 Query: 181 DVTVQAQILDLLRDVQRETAMALVLISHDLGVIAEVCSRAYVMYAGRIVETGPVSDLFAA 240 D T+QAQILDLL ++RET MALVLISHDLGV++E C R VMY G+I E +F + Sbjct: 196 DATIQAQILDLLTTIRRETGMALVLISHDLGVVSETCDRIAVMYGGKIAEVASAEAIFES 255 Query: 241 PRHPYTRSLLEALPSLDGPLQRMNVVSVGPPGAGLSRHGCAFAPRCEDRADLCDRVEPEL 300 P HPYT+ LL A+PS +G L R+ + P GCAFAPRC R +C+ V P L Sbjct: 256 PAHPYTQGLLAAIPSFEGELHRLIPIEGHVPEPARMPPGCAFAPRCPQRQRICETVVPHL 315 Query: 301 TADLLGRRVACV 312 GR ACV Sbjct: 316 AGIGDGRFCACV 327 >ref|NP_771183.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49808.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 327 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 185/315 (58%), Positives = 222/315 (70%) Query: 4 LLTIEQLSVAFGETRAVRSIDLQVREGEAVGIIGESGSGKSVTWLAALGLLPPSVAISGR 63 L++IE LSVAF +R +DL +R+GEA+G++GESGSGKSVTWLAALGLLP + G Sbjct: 4 LVSIEGLSVAFNGVPVLRGVDLTLRKGEALGLVGESGSGKSVTWLAALGLLPRHARVLGS 63 Query: 64 VLLDDQELLEAPTERLSRIRGKRIAMIVQDAQSALNPVLTVGRQVIEVLQLHRGMGERAS 123 V LD ELL AP L R+RG R+AMI QD SALNPVLT+ +Q+ E L LHR + A Sbjct: 64 VRLDGHELLGAPAVELDRVRGGRVAMIFQDPASALNPVLTIRKQLCEALALHRDLSGEAV 123 Query: 124 RAEAKRLFDLVRIPDAVRRLKFYPHELSGGQNQRVMIAMALAGGPELLIADEPTTALDVT 183 +AEA+RL DLV IPDA RRL YPHE SGGQ QR+MIAMALAG P+LLIADEPTTALD T Sbjct: 124 KAEARRLLDLVGIPDAGRRLSAYPHEFSGGQVQRIMIAMALAGNPDLLIADEPTTALDAT 183 Query: 184 VQAQILDLLRDVQRETAMALVLISHDLGVIAEVCSRAYVMYAGRIVETGPVSDLFAAPRH 243 +QAQIL+LL ++RE +MA+VLISHDLGV+AE C R VMYAGRI+E P + LFA P H Sbjct: 184 IQAQILELLSSIRREMSMAMVLISHDLGVVAENCDRVAVMYAGRIIEEAPANQLFADPVH 243 Query: 244 PYTRSLLEALPSLDGPLQRMNVVSVGPPGAGLSRHGCAFAPRCEDRADLCDRVEPELTAD 303 PY + L+ ALP LDGP +R+ + P GCAFAPRC A C P L Sbjct: 244 PYAQGLIGALPPLDGPRRRLTAIPGTVPDPASMPDGCAFAPRCALAAGPCGLAAPSLAPI 303 Query: 304 LLGRRVACVRADHAR 318 R VAC+RA+ +R Sbjct: 304 TNDRAVACIRAEASR 318 >ref|ZP_05784132.1| oligopeptide transport ATP-binding protein OppD [Citreicella sp. SE45] gb|EEX12335.1| oligopeptide transport ATP-binding protein OppD [Citreicella sp. SE45] Length = 329 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 179/309 (57%), Positives = 213/309 (68%) Query: 3 ELLTIEQLSVAFGETRAVRSIDLQVREGEAVGIIGESGSGKSVTWLAALGLLPPSVAISG 62 +L+ I L VAF + IDL V GEA+G++GESG GKSVTWLAALGLLP +SG Sbjct: 3 KLVEIRDLRVAFDGVPVLHGIDLDVAPGEALGLVGESGCGKSVTWLAALGLLPEKAHVSG 62 Query: 63 RVLLDDQELLEAPTERLSRIRGKRIAMIVQDAQSALNPVLTVGRQVIEVLQLHRGMGERA 122 V+L+ + L AP L ++RG RIAMI QD SALNPV+ VGRQ+ E L+LHRG+ + Sbjct: 63 SVVLEHRTLSNAPRSELEQVRGGRIAMIFQDPSSALNPVIRVGRQICEALRLHRGLSGKP 122 Query: 123 SRAEAKRLFDLVRIPDAVRRLKFYPHELSGGQNQRVMIAMALAGGPELLIADEPTTALDV 182 ++AEA RL D+V IPD RR YPHE SGGQ QR+MIAMALAG P+LLIADEPTTALD Sbjct: 123 AQAEALRLMDMVGIPDPRRRFNLYPHEFSGGQCQRLMIAMALAGEPDLLIADEPTTALDA 182 Query: 183 TVQAQILDLLRDVQRETAMALVLISHDLGVIAEVCSRAYVMYAGRIVETGPVSDLFAAPR 242 T+QAQILDLL ++RET MA V ISHDLG +A+VC R VMYAGRIVE GPV+ LF APR Sbjct: 183 TIQAQILDLLATLRRETGMATVFISHDLGAVAQVCERVCVMYAGRIVEAGPVAQLFEAPR 242 Query: 243 HPYTRSLLEALPSLDGPLQRMNVVSVGPPGAGLSRHGCAFAPRCEDRADLCDRVEPELTA 302 HPYTR L +A+P +DGP R+ + P GCAFAPRC C PEL Sbjct: 243 HPYTRGLFDAIPRMDGPRTRLIPIDGTVPDPRALPAGCAFAPRCARAQAFCRTERPELLP 302 Query: 303 DLLGRRVAC 311 GR +AC Sbjct: 303 QTDGRLLAC 311 >ref|NP_387074.1| putative transport system ATP-binding ABC transporter protein [Sinorhizobium meliloti 1021] ref|YP_004550344.1| oligopeptide/dipeptide ABC transporter ATPase subunit [Sinorhizobium meliloti AK83] emb|CAC47547.1| Putative arginine ABC transporter, ATP-binding component [Sinorhizobium meliloti 1021] gb|AEG05694.1| oligopeptide/dipeptide ABC transporter, ATPase subunit [Sinorhizobium meliloti BL225C] gb|AEG54730.1| oligopeptide/dipeptide ABC transporter, ATPase subunit [Sinorhizobium meliloti AK83] gb|AEH80383.1| ABC transporter, ATP-binding protein [Sinorhizobium meliloti SM11] Length = 337 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 176/311 (56%), Positives = 216/311 (69%) Query: 3 ELLTIEQLSVAFGETRAVRSIDLQVREGEAVGIIGESGSGKSVTWLAALGLLPPSVAISG 62 +L+ + L VAF + + IDL V +GEAVG++GESG GKSVTWLAALGLLP A++G Sbjct: 7 DLVALRDLKVAFDGVQVLHGIDLNVAKGEAVGLVGESGCGKSVTWLAALGLLPGKAAVTG 66 Query: 63 RVLLDDQELLEAPTERLSRIRGKRIAMIVQDAQSALNPVLTVGRQVIEVLQLHRGMGERA 122 V +D +EL A L +RG RIAMI QD S+LNPVL +GRQ++E L +HRG+ A Sbjct: 67 SVRIDGRELCGARRTALEEVRGGRIAMIFQDPSSSLNPVLRIGRQIVEALYIHRGLRGDA 126 Query: 123 SRAEAKRLFDLVRIPDAVRRLKFYPHELSGGQNQRVMIAMALAGGPELLIADEPTTALDV 182 +R EA RL D+V IPDA RR YPHE SGGQ QR+MIAMALAG P+LLIADEPTTALD Sbjct: 127 ARVEALRLMDMVGIPDAARRFDLYPHEFSGGQCQRLMIAMALAGEPDLLIADEPTTALDA 186 Query: 183 TVQAQILDLLRDVQRETAMALVLISHDLGVIAEVCSRAYVMYAGRIVETGPVSDLFAAPR 242 T+QAQILDLL ++ ET MALV ISHDLG +++VC R VMYAGRIVE G V+ LF+ PR Sbjct: 187 TIQAQILDLLNTLRAETGMALVFISHDLGAVSQVCDRVCVMYAGRIVEEGSVAQLFSEPR 246 Query: 243 HPYTRSLLEALPSLDGPLQRMNVVSVGPPGAGLSRHGCAFAPRCEDRADLCDRVEPELTA 302 HPYTR L +A+P +DGP R+ + P GC+F+PRC D C P L Sbjct: 247 HPYTRGLFDAIPRIDGPRDRLIPIPGTVPNPKHLPAGCSFSPRCPRAVDACGSDYPHLEP 306 Query: 303 DLLGRRVACVR 313 GRR+AC+R Sbjct: 307 QGDGRRLACMR 317 >ref|YP_001328521.1| oligopeptide/dipeptide ABC transporter ATPase [Sinorhizobium medicae WSM419] gb|ABR61686.1| oligopeptide/dipeptide ABC transporter, ATPase subunit [Sinorhizobium medicae WSM419] Length = 338 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 173/311 (55%), Positives = 217/311 (69%) Query: 3 ELLTIEQLSVAFGETRAVRSIDLQVREGEAVGIIGESGSGKSVTWLAALGLLPPSVAISG 62 +L+ + L VAF + + IDL V GEA+G++GESG GKSVTWLAALGLLP A++G Sbjct: 7 DLVELRDLKVAFDGVQVLHGIDLTVARGEALGLVGESGCGKSVTWLAALGLLPGKAAVTG 66 Query: 63 RVLLDDQELLEAPTERLSRIRGKRIAMIVQDAQSALNPVLTVGRQVIEVLQLHRGMGERA 122 + +D ++L A L +RG RIAMI QD S+LNPVL +GRQ++E LQ+HRG+ +A Sbjct: 67 SIRVDGRQLCGAERSDLEEVRGGRIAMIFQDPSSSLNPVLRIGRQIVEALQIHRGLRGQA 126 Query: 123 SRAEAKRLFDLVRIPDAVRRLKFYPHELSGGQNQRVMIAMALAGGPELLIADEPTTALDV 182 +R EA RL D+V IPDA RR YPHE SGGQ QR+MIAMALAG P+LL+ADEPTTALD Sbjct: 127 ARTEALRLLDMVGIPDAPRRFDLYPHEFSGGQCQRLMIAMALAGEPDLLVADEPTTALDA 186 Query: 183 TVQAQILDLLRDVQRETAMALVLISHDLGVIAEVCSRAYVMYAGRIVETGPVSDLFAAPR 242 T+QAQILDLL ++ ET MALV ISHDLG +++VC R VMYAGRIVE G V+ LF+ PR Sbjct: 187 TIQAQILDLLNALRAETGMALVFISHDLGAVSQVCERVCVMYAGRIVEEGSVAQLFSQPR 246 Query: 243 HPYTRSLLEALPSLDGPLQRMNVVSVGPPGAGLSRHGCAFAPRCEDRADLCDRVEPELTA 302 HPYTR L +A+P +DGP R+ + P GC+F+PRC D C P L Sbjct: 247 HPYTRGLFDAIPRIDGPRDRLIPIPGTVPNPKHLPAGCSFSPRCPYAVDACGSTYPSLEF 306 Query: 303 DLLGRRVACVR 313 GRR+AC+R Sbjct: 307 QGDGRRLACMR 317