BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0054.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203704.1| oligopeptide ABC transporter permease [Brady... 430 e-118 ref|YP_001242283.1| putative oligopeptide ABC transporter permea... 428 e-118 ref|NP_771181.1| ABC transporter permease protein [Bradyrhizobiu... 400 e-109 ref|ZP_06894800.1| dipeptide ABC superfamily ATP binding cassett... 398 e-109 ref|YP_673560.1| binding-protein-dependent transport systems inn... 394 e-108 >ref|YP_001203704.1| oligopeptide ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL75467.1| Putative oligopeptide ABC superfamily (permease protein) [Bradyrhizobium sp. ORS 278] Length = 310 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 214/301 (71%), Positives = 252/301 (83%) Query: 8 RLARAMITILVVVGFAFIVLRLSGDPALEILSNDAPPEARDAFRSAFGLDQPIWLQFFDY 67 RL+RA++TI +VV FAFIVLRLSGDPAL I+ +APPE +AFR A+GLD PIW+Q+ DY Sbjct: 9 RLSRALLTIALVVTFAFIVLRLSGDPALMIMGPEAPPEVIEAFRKAWGLDHPIWVQYLDY 68 Query: 68 MTRVATGNLGNSMREGRDALSVVIERIPITLALSLPALLINVLIGIPAGILAALHRNSLL 127 + G LG SMR+GR A+ +VIERIP TLAL++PA L+ VL+GIPAGI AALHR S + Sbjct: 69 FKAIGQGELGRSMRDGRPAIQLVIERIPATLALTIPAFLVKVLLGIPAGIYAALHRGSAI 128 Query: 128 DRGVMLGAVAGFTIPSFVLGLLLVLVFSVQLGCLPSGGARSWHHAILPVLTLGAGGAAVL 187 DR VM+ AVAGFT+PSFVL LLLVL+F+VQLG LPSGG SW HAILP++TLG GGAAVL Sbjct: 129 DRAVMITAVAGFTVPSFVLALLLVLIFAVQLGWLPSGGQESWRHAILPIVTLGFGGAAVL 188 Query: 188 ARYTRSAMLEVLGQPYIRTAHVKGVPWGLIVYRHALPNAAIPMVTIVGFMVGQLIAGAVL 247 AR+TRSAMLE+LGQPYIRTA KGVPW ++ HALPNAAIP VTI+GFMVG LIAGAV+ Sbjct: 189 ARFTRSAMLEILGQPYIRTASAKGVPWRRVITDHALPNAAIPTVTILGFMVGSLIAGAVV 248 Query: 248 VESVFAWPGVGRLLVASVVSRDLPVVQCVLFLVALTMVTSNLVVDLLYGLLDPRIRRGGH 307 VESVF+WPGVGRLLV +V +RDL VVQC+L LVA+TMVTSNL+VD LYGLLDPR+R G Sbjct: 249 VESVFSWPGVGRLLVVAVANRDLAVVQCILLLVAMTMVTSNLIVDFLYGLLDPRLRSKGA 308 Query: 308 A 308 A Sbjct: 309 A 309 >ref|YP_001242283.1| putative oligopeptide ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ38377.1| putative oligopeptide ABC transporter (permease protein) [Bradyrhizobium sp. BTAi1] Length = 309 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 214/301 (71%), Positives = 250/301 (83%) Query: 8 RLARAMITILVVVGFAFIVLRLSGDPALEILSNDAPPEARDAFRSAFGLDQPIWLQFFDY 67 R ARA++TI +VV FAFIVLRLSGDPAL I+ +APPE +AFR A+GLD PIW+Q+ DY Sbjct: 8 RFARALLTIALVVTFAFIVLRLSGDPALMIMGPEAPPEVIEAFRKAWGLDHPIWVQYLDY 67 Query: 68 MTRVATGNLGNSMREGRDALSVVIERIPITLALSLPALLINVLIGIPAGILAALHRNSLL 127 + G LG SMR+GR A+ +VIERIP TLAL++PA L+ VL+GIPAGI AALHR S + Sbjct: 68 FKAIGQGELGRSMRDGRPAIQLVIERIPATLALTIPAFLVKVLLGIPAGIYAALHRGSAI 127 Query: 128 DRGVMLGAVAGFTIPSFVLGLLLVLVFSVQLGCLPSGGARSWHHAILPVLTLGAGGAAVL 187 DR VM+ AVAGFT+PSFVL LLLVL+F+VQLG LPSGG SW HAILP+ TLG GGAAVL Sbjct: 128 DRAVMITAVAGFTVPSFVLALLLVLIFAVQLGWLPSGGQDSWRHAILPIATLGFGGAAVL 187 Query: 188 ARYTRSAMLEVLGQPYIRTAHVKGVPWGLIVYRHALPNAAIPMVTIVGFMVGQLIAGAVL 247 AR+TRSAMLE+LGQPYIRTA KGVPW ++ HALPNAAIP VTI+GFMVG LIAGAV+ Sbjct: 188 ARFTRSAMLEILGQPYIRTASAKGVPWRRVITDHALPNAAIPTVTILGFMVGSLIAGAVV 247 Query: 248 VESVFAWPGVGRLLVASVVSRDLPVVQCVLFLVALTMVTSNLVVDLLYGLLDPRIRRGGH 307 VESVF+WPGVGRLLV +V +RDL VVQC+L LVA+TMVTSNL+VD LYGLLDPR+R G Sbjct: 248 VESVFSWPGVGRLLVVAVANRDLAVVQCILLLVAMTMVTSNLIVDFLYGLLDPRLRSKGA 307 Query: 308 A 308 A Sbjct: 308 A 308 >ref|NP_771181.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49806.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 310 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/302 (71%), Positives = 247/302 (81%), Gaps = 1/302 (0%) Query: 8 RLARAMITILVVVGFAFIVLRLSGDPALEILSNDAPPEARDAFRSAFGLDQPIWLQFFDY 67 R+ RA +TI++VV FAF+VLRLSGDPAL IL +APPE AFR A+GLD PIW Q+ DY Sbjct: 9 RIGRAALTIVLVVTFAFVVLRLSGDPALMILGPEAPPEVIAAFRKAWGLDDPIWFQYLDY 68 Query: 68 MTRVATGNLGNSMREGRDALSVVIERIPITLALSLPALLINVLIGIPAGILAALHRNSLL 127 + +A G LG SMR+GR A+ +V+ERIP TLAL+LPA V +G+PAGI AALHR S + Sbjct: 69 FSAIARGELGRSMRDGRPAIQLVLERIPATLALTLPAFFFKVALGVPAGIYAALHRGSAI 128 Query: 128 DRGVMLGAVAGFTIPSFVLGLLLVLVFSVQLGCLPSGGARSWHHAILPVLTLGAGGAAVL 187 DR VM+ AVAGFT+PSFVL LLLVLVF+VQLG LPSGG SW HAILP+ TL GGAAVL Sbjct: 129 DRAVMMTAVAGFTVPSFVLALLLVLVFAVQLGWLPSGGQDSWRHAILPIATLSLGGAAVL 188 Query: 188 ARYTRSAMLEVLGQPYIRTAHVKGVPWGLIVYRHALPNAAIPMVTIVGFMVGQLIAGAVL 247 AR+TRSAMLEVLGQPYIRTA KGVPW +V HALPNAAIP VTI+GFMVG LIAGAV+ Sbjct: 189 ARFTRSAMLEVLGQPYIRTASAKGVPWRRVVTSHALPNAAIPTVTILGFMVGTLIAGAVV 248 Query: 248 VESVFAWPGVGRLLVASVVSRDLPVVQCVLFLVALTMVTSNLVVDLLYGLLDPRIR-RGG 306 VESVF+WPGVGRLLV +V +RDL VVQC+L LVALTMVTSNLVVD LYG LDPR+R +G Sbjct: 249 VESVFSWPGVGRLLVVAVANRDLAVVQCILLLVALTMVTSNLVVDFLYGFLDPRLRAKGA 308 Query: 307 HA 308 HA Sbjct: 309 HA 310 >ref|ZP_06894800.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane protein DppB [Roseomonas cervicalis ATCC 49957] gb|EFH13482.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane protein DppB [Roseomonas cervicalis ATCC 49957] Length = 310 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/302 (70%), Positives = 256/302 (84%), Gaps = 3/302 (0%) Query: 8 RLARAMITILVVVGFAFIVLRLSGDPALEILSNDAPPEARDAFRSAFGLDQPIWLQFFDY 67 RL+RA++T+++VV FAF+VLRLSGDPAL I+S DAPPEA AFR A+GLD PIW+Q+ Y Sbjct: 8 RLSRALLTLVLVVSFAFVVLRLSGDPALLIMSADAPPEAIAAFRRAWGLDDPIWVQYLRY 67 Query: 68 MTRVATGNLGNSMREGRDALSVVIERIPITLALSLPALLINVLIGIPAGILAALHRNSLL 127 T + G+LG SMR GR A+S+V ERIP TLAL+LPAL+I + +G+PAGI AALHRNS + Sbjct: 68 FTAILQGDLGMSMRSGRSAISLVAERIPATLALTLPALIIKIGLGVPAGIYAALHRNSAI 127 Query: 128 DRGVMLGAVAGFTIPSFVLGLLLVLVFSVQLGCLPSGGARSWHHAILPVLTLGAGGAAVL 187 DR VML AVAGFT+PSFVLGLLLVL+F+VQLG LPSGG SW HAILP++T+G GGAAVL Sbjct: 128 DRAVMLLAVAGFTVPSFVLGLLLVLLFAVQLGWLPSGGQDSWRHAILPIITMGFGGAAVL 187 Query: 188 ARYTRSAMLEVLGQPYIRTAHVKGVPWGLIVYRHALPNAAIPMVTIVGFMVGQLIAGAVL 247 AR+TRSAMLEVLGQPY+RTA KGVPW V RHALPNAAIP VTI+GFM+G ++AGAV+ Sbjct: 188 ARFTRSAMLEVLGQPYMRTALAKGVPWHAAVRRHALPNAAIPTVTIIGFMIGSVLAGAVV 247 Query: 248 VESVFAWPGVGRLLVASVVSRDLPVVQCVLFLVALTMVTSNLVVDLLYGLLDPRIR---R 304 VESVF+WPGVGRLLV +V +RDL VVQC+L LVA TM+ SNLVVDLLYG+LDPR+R + Sbjct: 248 VESVFSWPGVGRLLVVAVANRDLAVVQCILLLVAATMIVSNLVVDLLYGVLDPRLRSAAK 307 Query: 305 GG 306 GG Sbjct: 308 GG 309 >ref|YP_673560.1| binding-protein-dependent transport systems inner membrane component [Mesorhizobium sp. BNC1] gb|ABG62395.1| binding-protein-dependent transport systems inner membrane component [Chelativorans sp. BNC1] Length = 308 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/303 (64%), Positives = 240/303 (79%) Query: 1 MAWFAFARLARAMITILVVVGFAFIVLRLSGDPALEILSNDAPPEARDAFRSAFGLDQPI 60 M F RL RA+ITI VV FAF+VLR+SGDPA +L D P E+ DAFR A+GLDQP+ Sbjct: 1 MVQFVLTRLLRAVITIAAVVTFAFVVLRMSGDPAQVMLGPDVPQESVDAFRRAWGLDQPL 60 Query: 61 WLQFFDYMTRVATGNLGNSMREGRDALSVVIERIPITLALSLPALLINVLIGIPAGILAA 120 W+Q+F Y+ + TG+ G SMR+ A+ +V+ER+P TL L+LPAL + +LIGIPAG+ AA Sbjct: 61 WVQYFAYLKSILTGDFGVSMRDKAPAIQLVLERVPATLQLTLPALFLKLLIGIPAGVYAA 120 Query: 121 LHRNSLLDRGVMLGAVAGFTIPSFVLGLLLVLVFSVQLGCLPSGGARSWHHAILPVLTLG 180 LHR S+ DRGV+L ++ GFTIPSFVLGLLLVL+FSV G LPSGG +W H ILP LTL Sbjct: 121 LHRQSVTDRGVILASIIGFTIPSFVLGLLLVLIFSVTFGVLPSGGQDTWMHGILPTLTLS 180 Query: 181 AGGAAVLARYTRSAMLEVLGQPYIRTAHVKGVPWGLIVYRHALPNAAIPMVTIVGFMVGQ 240 GG +LAR++RSAM+EV+GQP+IRTA KG+ W +V+ HALPNAAIP+VTIVGFMVG Sbjct: 181 IGGIGILARFSRSAMIEVMGQPFIRTASAKGLKWREVVWGHALPNAAIPIVTIVGFMVGS 240 Query: 241 LIAGAVLVESVFAWPGVGRLLVASVVSRDLPVVQCVLFLVALTMVTSNLVVDLLYGLLDP 300 LIAGAV+VES+F+WPG+GRLLV SV +RDL VVQC+L ++A MV SNLVVDLLYG LDP Sbjct: 241 LIAGAVVVESIFSWPGIGRLLVVSVTNRDLAVVQCILLIIAAAMVISNLVVDLLYGWLDP 300 Query: 301 RIR 303 R+R Sbjct: 301 RLR 303