BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0053.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06894801.1| dipeptide ABC superfamily ATP binding cassett... 349 2e-94 ref|NP_771180.1| ABC transporter permease protein [Bradyrhizobiu... 332 3e-89 ref|YP_001328518.1| binding-protein-dependent transport systems ... 332 3e-89 ref|YP_001242284.1| putative oligopeptide ABC transporter permea... 332 4e-89 ref|NP_387071.1| putative transport system permease ABC transpor... 332 4e-89 >ref|ZP_06894801.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane protein DppC [Roseomonas cervicalis ATCC 49957] gb|EFH13483.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane protein DppC [Roseomonas cervicalis ATCC 49957] Length = 313 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 184/264 (69%), Positives = 218/264 (82%) Query: 2 ALAYLAVFVATAAVAQFLIPYDPAAIDLKARLSPPIGWGGSLAHPFGTDELGRDMLSRLV 61 AL ++ + +A A +A ++ PY A+DL++RLSPP+ GGS AHP GTDELGRD+LSRL+ Sbjct: 50 ALGWILLMLAIALLADWITPYSITALDLRSRLSPPVFMGGSWAHPLGTDELGRDVLSRLI 109 Query: 62 LSIQMSVSIGLGATGLGAMVGTSLGFIAAHLRGWTEQAILALIDFQATMPFLILALAVLA 121 SI+MS+ I GA + A++G LGF+AAH RG EQA+LAL+DFQA MPF+ILAL+VLA Sbjct: 110 WSIRMSLLIAFGAAIIAAVLGVVLGFLAAHFRGLVEQAVLALVDFQAAMPFMILALSVLA 169 Query: 122 FIGNSLAVFVCLLALHGWERYARIARSLAISANAQGYASAVRQLGAHPLHVYWRHILPNV 181 F GNSL +FVCLL LHGWERYARIAR LAISA AQGYA+AV+QLGA P VY RH+LPN+ Sbjct: 170 FFGNSLVLFVCLLGLHGWERYARIARGLAISAGAQGYAAAVQQLGASPWRVYARHVLPNI 229 Query: 182 AATLIVSMTISFPEIILVESGLSFLGLGVQPPSTSLGAMVGYGRDYLVRAPWILMMPSLV 241 AATLIVSMT++FPEIIL+ESGLSFLGLGVQPP TSLG MVGYGR+YL RAPWIL+ PS V Sbjct: 230 AATLIVSMTLAFPEIILLESGLSFLGLGVQPPMTSLGNMVGYGREYLTRAPWILLSPSCV 289 Query: 242 ISLMALSVSLIGDWLRDRFDGTLR 265 I L LSVSL+GDWLRDR D TLR Sbjct: 290 IVLTTLSVSLLGDWLRDRLDPTLR 313 >ref|NP_771180.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49805.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 320 Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 166/265 (62%), Positives = 208/265 (78%), Gaps = 4/265 (1%) Query: 1 MALAYLAVFVATAAVAQFLIPYDPAAIDLKARLSPPIGWGGSLAHPFGTDELGRDMLSRL 60 +A+ ++ + AA A+ + PY +DL+ RL+ P G++AH GTDELGRD+LSRL Sbjct: 60 LAVTWIVAMLVIAAFAEKIAPYGYTQLDLRNRLASP----GNVAHWLGTDELGRDVLSRL 115 Query: 61 VLSIQMSVSIGLGATGLGAMVGTSLGFIAAHLRGWTEQAILALIDFQATMPFLILALAVL 120 ++SI++S+ I GAT + A+VGT+LGF AAH RG EQ +L L DFQA+MPFLI+ALAVL Sbjct: 116 LVSIRISLLIAFGATAISAIVGTTLGFFAAHFRGTVEQLVLMLTDFQASMPFLIMALAVL 175 Query: 121 AFIGNSLAVFVCLLALHGWERYARIARSLAISANAQGYASAVRQLGAHPLHVYWRHILPN 180 AF GNSL + + L+ L GWERYARIAR LAISANAQGYA+AVRQLGA P +Y RHILPN Sbjct: 176 AFFGNSLPLLIGLMGLFGWERYARIARGLAISANAQGYAAAVRQLGATPSRIYLRHILPN 235 Query: 181 VAATLIVSMTISFPEIILVESGLSFLGLGVQPPSTSLGAMVGYGRDYLVRAPWILMMPSL 240 +A+TLIVS T+ FPE+IL+ESGLSFLGLGVQPP TSLG MVGYGR+YL RAPWI++ P+ Sbjct: 236 IASTLIVSTTLVFPEVILMESGLSFLGLGVQPPMTSLGNMVGYGREYLTRAPWIMLAPAT 295 Query: 241 VISLMALSVSLIGDWLRDRFDGTLR 265 I + L+VS+IGDWLRDR D TL+ Sbjct: 296 TIVVTTLAVSVIGDWLRDRLDPTLQ 320 >ref|YP_001328518.1| binding-protein-dependent transport systems inner membrane component [Sinorhizobium medicae WSM419] gb|ABR61683.1| binding-protein-dependent transport systems inner membrane component [Sinorhizobium medicae WSM419] Length = 293 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 169/261 (64%), Positives = 205/261 (78%), Gaps = 4/261 (1%) Query: 5 YLAVFVATAAVAQFLIPYDPAAIDLKARLSPPIGWGGSLAHPFGTDELGRDMLSRLVLSI 64 +LA VA A A +L PYD A+DL +RLS P G+L H GTDELGRD+LSRL+ S+ Sbjct: 37 WLAAMVAIALFADYLRPYDITAMDLTSRLSAP----GALRHLLGTDELGRDVLSRLIQSV 92 Query: 65 QMSVSIGLGATGLGAMVGTSLGFIAAHLRGWTEQAILALIDFQATMPFLILALAVLAFIG 124 ++S+ I GAT L A+ GT+LGF AA RG E +LAL DFQA +PFLI++LAVLAF G Sbjct: 93 RVSLIIAFGATVLSAVFGTALGFAAARFRGIVEHLVLALADFQAALPFLIMSLAVLAFFG 152 Query: 125 NSLAVFVCLLALHGWERYARIARSLAISANAQGYASAVRQLGAHPLHVYWRHILPNVAAT 184 +S+ + VCL+ +GWERYARIAR LAISA AQGYA+AV QLGA P VY RHILPNVA+T Sbjct: 153 SSMVLLVCLMGFYGWERYARIARGLAISAGAQGYAAAVVQLGATPARVYLRHILPNVAST 212 Query: 185 LIVSMTISFPEIILVESGLSFLGLGVQPPSTSLGAMVGYGRDYLVRAPWILMMPSLVISL 244 LIVSMT++FPEIIL+ESGLSFLGLGVQPP TSLG MVG+GR+YL RAPWI++ P+ VI L Sbjct: 213 LIVSMTLTFPEIILMESGLSFLGLGVQPPETSLGNMVGFGREYLTRAPWIMLAPAAVIML 272 Query: 245 MALSVSLIGDWLRDRFDGTLR 265 LS+SL+GDWLRD+ D T+R Sbjct: 273 TTLSISLVGDWLRDKLDPTVR 293 >ref|YP_001242284.1| putative oligopeptide ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ38378.1| putative oligopeptide ABC transporter (permease protein) [Bradyrhizobium sp. BTAi1] Length = 285 Score = 332 bits (851), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 169/265 (63%), Positives = 208/265 (78%), Gaps = 4/265 (1%) Query: 1 MALAYLAVFVATAAVAQFLIPYDPAAIDLKARLSPPIGWGGSLAHPFGTDELGRDMLSRL 60 MA+ ++A + A A + PY DL+ RL+ P G+ AH GTDELGRD+LSRL Sbjct: 25 MAIGWIAAMLIVAIFADQIAPYGFTKFDLRNRLALP----GNPAHWLGTDELGRDVLSRL 80 Query: 61 VLSIQMSVSIGLGATGLGAMVGTSLGFIAAHLRGWTEQAILALIDFQATMPFLILALAVL 120 ++SI++S+ I GAT + A+VGT+LGF+AAH RG EQ +L L DFQA+MPFLILALAVL Sbjct: 81 IVSIRISLLIAFGATAISAIVGTTLGFLAAHFRGLVEQFVLMLADFQASMPFLILALAVL 140 Query: 121 AFIGNSLAVFVCLLALHGWERYARIARSLAISANAQGYASAVRQLGAHPLHVYWRHILPN 180 AF GNSL + + L+ L GWERYARIAR LAISANAQGYA+AVRQLGA P VY RHILPN Sbjct: 141 AFFGNSLPLLIGLMGLFGWERYARIARGLAISANAQGYAAAVRQLGATPQRVYLRHILPN 200 Query: 181 VAATLIVSMTISFPEIILVESGLSFLGLGVQPPSTSLGAMVGYGRDYLVRAPWILMMPSL 240 +A+TLIVSMT+ FPE+IL+ESGLSFLGLGVQPP TSLG MVGYGR+YL RAPW+++ P++ Sbjct: 201 IASTLIVSMTLVFPEVILLESGLSFLGLGVQPPMTSLGNMVGYGREYLTRAPWVMLAPAV 260 Query: 241 VISLMALSVSLIGDWLRDRFDGTLR 265 I + L+VS+IGDWLRDR D TL+ Sbjct: 261 TIVITTLAVSMIGDWLRDRLDPTLQ 285 >ref|NP_387071.1| putative transport system permease ABC transporter protein [Sinorhizobium meliloti 1021] ref|YP_004550341.1| ABC transporter integral membrane subunit [Sinorhizobium meliloti AK83] emb|CAC47544.1| Putative amino acid ABC transporter, permease component [Sinorhizobium meliloti 1021] gb|AEG05691.1| ABC-type transporter, integral membrane subunit [Sinorhizobium meliloti BL225C] gb|AEG54727.1| ABC-type transporter, integral membrane subunit [Sinorhizobium meliloti AK83] gb|AEH80380.1| ABC transporter, permease [Sinorhizobium meliloti SM11] Length = 293 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 169/261 (64%), Positives = 205/261 (78%), Gaps = 4/261 (1%) Query: 5 YLAVFVATAAVAQFLIPYDPAAIDLKARLSPPIGWGGSLAHPFGTDELGRDMLSRLVLSI 64 +LA + A A +L PYD A+DL +RLS P G+L H GTDELGRD+LSRL+ SI Sbjct: 37 WLAAMIVIALFAGYLRPYDITAMDLTSRLSAP----GTLKHWLGTDELGRDVLSRLIQSI 92 Query: 65 QMSVSIGLGATGLGAMVGTSLGFIAAHLRGWTEQAILALIDFQATMPFLILALAVLAFIG 124 ++S+ I GAT L A+ GT+LGF AA RG TE +LAL DFQA +PFLI++LAVLAF G Sbjct: 93 RVSLIIAFGATVLSAVFGTALGFAAARFRGLTEHLVLALADFQAALPFLIMSLAVLAFFG 152 Query: 125 NSLAVFVCLLALHGWERYARIARSLAISANAQGYASAVRQLGAHPLHVYWRHILPNVAAT 184 +S+ + VCL+ +GWERYARIAR LAISA AQGYA+AV QLGA P VY RHILPNVA+T Sbjct: 153 SSMVLLVCLMGFYGWERYARIARGLAISAGAQGYAAAVVQLGATPARVYLRHILPNVAST 212 Query: 185 LIVSMTISFPEIILVESGLSFLGLGVQPPSTSLGAMVGYGRDYLVRAPWILMMPSLVISL 244 LIVSMT++FPEIIL+ESGLSFLGLGVQPP TSLG MVG+GR+YL RAPWI++ P+ VI L Sbjct: 213 LIVSMTLTFPEIILMESGLSFLGLGVQPPETSLGNMVGFGREYLTRAPWIMLAPAAVIML 272 Query: 245 MALSVSLIGDWLRDRFDGTLR 265 LS+SL+GDWLRD+ D T+R Sbjct: 273 TTLSISLVGDWLRDKLDPTVR 293