BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0052.p (515 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EGP55094.1| oligopeptide ABC transpoter oligopeptide-binding ... 472 e-131 ref|NP_085702.1| oligopeptide ABC transpoter oligopeptide-bindin... 405 e-110 ref|NP_771184.1| ABC transporter substrate-binding protein [Brad... 375 e-101 ref|YP_001242280.1| putative oligopeptide ABC transporter substr... 369 e-100 ref|YP_001203707.1| putative oligopeptide ABC transporter substr... 367 3e-99 >gb|EGP55094.1| oligopeptide ABC transpoter oligopeptide-binding protein [Agrobacterium tumefaciens F2] Length = 533 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 239/520 (45%), Positives = 323/520 (62%), Gaps = 7/520 (1%) Query: 2 LGLSRRYLLKTIALGAVLPAQ----AFGQSARPRIV-VAVPTQPDYVDPVMLNNTPALRM 56 ++RR L+ A L A A Q+A R + V + P +DP M N T R+ Sbjct: 14 FSMTRRNLIAAGAASGFLAASGAPFAMAQNAARRTLRVGMSGFPATLDPAMANATAVRRV 73 Query: 57 LSNAFDGLLRIDFNDNMAVKPAIAESWRRLDSTTVEFTLRPGVKFHDGSTVTAGDIVFSL 116 ++N FD LL D + NMA++PA+AE W R+ + + LR GV FHDGS TA D+ FSL Sbjct: 74 VTNMFDKLLAFDQSANMALRPALAERWERVSGSALRLFLRKGVMFHDGSPFTAEDVAFSL 133 Query: 117 GQERRFGPTGAGNTIALQYQQTIASVQPTGSSTVLVTTKIPDPAIDKKLAAWSAQIVSEA 176 + GP AG T A+Q TI V+ S TV+V TK D I+K+LA+W ++IVS+ Sbjct: 134 SPDHLLGPDKAGKTTAMQTLDTIDRVEIIDSHTVIVHTKGDDGLIEKRLASWHSEIVSKR 193 Query: 177 AFRKAGSWENWFKGPVGTGPYRVISNQKDISLVLKSHDEYWGGLPPFASIEFRIVPEVAS 236 AF AG+W+ W PVGTGPY+++S D+ +VL SHD YWGGLPPF+ + FRI+ E+AS Sbjct: 194 AFLAAGNWDAWLAAPVGTGPYKIVSKTLDVDIVLASHDAYWGGLPPFSGVHFRIIRELAS 253 Query: 237 RVNGLLAGEYDLISDLLPDQFESIDT-SRFDVVGGAIANLRVLAIDTTAPWLSDRRIRQA 295 R+N L+A E D I+D+ PD F I+ ++ GG + N+R L IDTT P L +R+A Sbjct: 254 RMNALVAKEVDFITDISPDMFPEIERHGELEIAGGPVQNIRSLTIDTTDPVLGKVGVRRA 313 Query: 296 LSFAIDRDLIITQLWRGRIDVPHGAQYPMFGDVYDSSFPTPGYDPEKARGLLREAGYNGD 355 LS A+DR ++ LW+GR+ VP+G Q FG+ Y FP +DPE AR LLREAGY+G+ Sbjct: 314 LSLALDRKALVQALWQGRLPVPNGYQLATFGEAYIEDFPALAHDPELARKLLREAGYDGE 373 Query: 356 PIVYRLLNNWYPNQVLTAQILVQMWKAVGLNVALHPMENFSQVYAKPSHAIWDESFLPSW 415 I Y+LLNN+YPNQV AQI+++MW+ VG+NV + MENF+Q+ KP HAI+D S + Sbjct: 374 KITYKLLNNYYPNQVSGAQIMIEMWRGVGINVEIQMMENFAQIQKKPIHAIYDNSNTAIF 433 Query: 416 PDPTSMVWRQHGPGGSQHALKIWDSPQYHSVGAAFAKSSDNAERKELARRALEIFAEEVP 475 PDP + WR GP G L IW + +Y +G K+ D A R+ + RR LEI + P Sbjct: 434 PDPLAHAWRLFGPNGEMPKLGIWSNEEYFRIGETLKKTIDPAARRPILRRMLEITTNDDP 493 Query: 476 -FIILHNNGAFYAKRRKLAWAPYSALVMDFGPFNPAHQVT 514 IILH +G FYAKRR W P +L +DFGP N A+ T Sbjct: 494 GCIILHGSGQFYAKRRDFGWTPEPSLDLDFGPLNLAYAKT 533 >ref|NP_085702.1| oligopeptide ABC transpoter oligopeptide-binding protein [Mesorhizobium loti MAFF303099] dbj|BAB54543.1| oligopeptide ABC transpoter oligopeptide-binding protein [Mesorhizobium loti MAFF303099] Length = 516 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/514 (40%), Positives = 311/514 (60%), Gaps = 8/514 (1%) Query: 2 LGLSRRYLLKTIA----LGAVLPAQAFGQSARPRIVVAVPTQPDYVDPVMLNNTPALRML 57 + ++RR LK ++ LG + P A Q R +++AV P +DP+ L R+ Sbjct: 1 MNMTRRNYLKVMSAIPLLGTIAPRIANAQP-RTDLIIAVQDNPPQLDPLRLTTNITYRLA 59 Query: 58 SNAFDGLLRIDFNDNMAVKPAIAESWRRLDSTTVEFTLRPGVKFHDGSTVTAGDIVFSLG 117 ++ +D L+RID+ + + P +AESW ++D T + +R GV FHDGS +T D+ F+ G Sbjct: 60 ASIYDTLIRIDYLNGERLVPGLAESWHQVDPRTWDVVIRKGVHFHDGSVMTTEDVAFTFG 119 Query: 118 QERRFGPTGAGNTIALQYQQTIASVQPTGSSTVLVTTKIPDPAIDKKLAAWSAQIVSEAA 177 ER G +I+ Q+ + V STV TK DP + +L+ W++QI+S+AA Sbjct: 120 PERMLTEGLPGQSISRQFFSVLEKVAAVDESTVRFVTKEADPLFEFRLSNWTSQIISKAA 179 Query: 178 FRKAGSWENWFKGPVGTGPYRVISNQKDISLVLKSHDEYWGGLPPFASIEFRIVPEVASR 237 F+KAG+W+ W PVGTGPYRV + + L +HD+YWGG PPF+S+ F+++PE ASR Sbjct: 180 FQKAGNWDKWALSPVGTGPYRVAEVKAGDRIRLVAHDQYWGGQPPFSSLTFKVMPEAASR 239 Query: 238 VNGLLAGEYDLISDLLPDQFESI-DTSRFDVVGGAIANLRVLAIDTTAPWLSDRRIRQAL 296 VN L AG+ +I+++ PDQ +I DVVGG I N+R + T L D RIRQAL Sbjct: 240 VNALAAGDAHIITEVTPDQIATIRGHGNLDVVGGPINNIRCVNYGTFGGPLKDVRIRQAL 299 Query: 297 SFAIDRDLIITQLWRGRIDVPHGAQYPMFGDVYDSSFPTPGYDPEKARGLLREAGYNGDP 356 + +IDR+ I QL+ G +DVP G Q+ +GD++ +FP P YDP+ A+ LL EA Y+G P Sbjct: 300 NLSIDRESIAKQLFSGMVDVPRGFQWQAYGDMFVENFPMPAYDPDAAKKLLSEAAYSGAP 359 Query: 357 IVYRLLNNWYPNQVLTAQILVQMWKAVGLNVALHPMENFSQVYAKPSHAIWDESFLPSWP 416 I YR+L N+Y ++ AQ L QMW+AVG+NV L EN+ Q++A+P++AI+D S +P Sbjct: 360 IEYRILANYYTAELDVAQTLQQMWQAVGINVQLKVCENWGQMFAQPNYAIFDGSADMIYP 419 Query: 417 DPTSMVWRQHGPGG-SQHALKIWDSPQYHSVGAAFAKSSDNAERKELARRALEIFAE-EV 474 D +W +GP G + K W + ++ +G +D ER++L R L+IF E + Sbjct: 420 DILGSLWTNYGPDGFIRFEAKSWSNAEFDEIGKKLQTLTDRTERRKLHERVLKIFNEIDP 479 Query: 475 PFIILHNNGAFYAKRRKLAWAPYSALVMDFGPFN 508 P +L+N Y KR +AW P+ +MDFGPFN Sbjct: 480 PGTVLYNTPMLYGKRGDIAWLPHRTPMMDFGPFN 513 >ref|NP_771184.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49809.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 545 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 210/538 (39%), Positives = 306/538 (56%), Gaps = 34/538 (6%) Query: 1 MLGLSRRYLLK--TIALGAVL-PAQAFGQ-SARPRIVVAVP--TQPDYVDPVMLNNTPAL 54 M L+RR +LK T A G +L P A Q RP + +AV T + +D + + Sbjct: 1 MSKLTRRTILKSGTAAAGTLLLPRFAIAQGDNRPSVTIAVQKVTNANVLDVLREQSNVGE 60 Query: 55 RML-SNAFDGLLRIDFNDNMAVKPAIAESWRRLDSTTVEFTLRPGVKFHDGSTVTAGDIV 113 R+ S+ ++GL+ ++ ++ P +A WRR+D TVE LR GVKFH+G +TA D+V Sbjct: 61 RVFFSSIWEGLISKNWRGSLEAVPGLATEWRRIDDQTVEVKLRQGVKFHNGDELTAEDVV 120 Query: 114 FSLGQERRFGPTGAGNTIALQYQQTIASVQP------------------------TGSST 149 FS +ER FG T A + +Q + I + +P T Sbjct: 121 FSFSRERMFGETEAKSRSTIQAFEKIPTPRPGKELPPDVPAVARRIWPDLVRVDAVDKYT 180 Query: 150 VLVTTKIPDPAIDKKLAAWSAQIVSEAAFRKAGSWENWFKGPVGTGPYRVISNQKDISLV 209 V PD I+ +L+ + + I++ A+ ++ S+ +W + PV TGPYRV+ + D+SL Sbjct: 181 VRFYNATPDVTIEGRLSRYGSDIMNRRAWDESASYLDWARKPVTTGPYRVVELKPDVSLT 240 Query: 210 LKSHDEYWGGLPPFASIEFRIVPEVASRVNGLLAGEYDLISDLLPDQFESID-TSRFDVV 268 L++HDEYWGG PP I F VPEVASR+NGLL+GEY D+ PDQ I+ + F+V Sbjct: 241 LEAHDEYWGGRPPLKRIRFLEVPEVASRINGLLSGEYQFACDIPPDQIAGIEKNAAFEVQ 300 Query: 269 GGAIANLRVLAIDTTAPWLSDRRIRQALSFAIDRDLIITQLWRGRIDVPHGAQYPMFGDV 328 GG I N R+ D L++ +R+A + AIDR I+ LW GR VP G Q+ +GD+ Sbjct: 301 GGTILNHRLTVFDKNHAQLANPLVRRAFTHAIDRQAIVDSLWAGRTRVPKGLQWEFYGDM 360 Query: 329 YDSSFPTPGYDPEKARGLLREAGYNGDPIVYRLLNNWYPNQVLTAQILVQMWKAVGLNVA 388 +++ + P YDP+ A+ LL++A Y GDPI YRLLNN+Y NQV TAQ+LV+MWK+VGLNV Sbjct: 361 FNADWNVPAYDPKLAQDLLKQANYKGDPIPYRLLNNYYTNQVATAQVLVEMWKSVGLNVQ 420 Query: 389 LHPMENFSQVYAK-PSHAIWDESFLPSWPDPTSMVWRQHGPGGSQHALKIWDSPQYHSVG 447 + EN+SQ+ + P+ A+ D S ++ DP S + QHGP G Q + W + + +++ Sbjct: 421 IETKENWSQIMERAPTRAVRDWSNSAAFNDPVSSLVAQHGPNGQQQQIGEWTNAELNTLS 480 Query: 448 AAFAKSSDNAERKELARRALEIFAEEVP-FIILHNNGAFYAKRRKLAWAPYSALVMDF 504 S+D A RK+ RR LEI E P + +LH N F AK + + W A MDF Sbjct: 481 EFLETSTDRAARKKAFRRMLEIAEREDPAYTVLHQNATFTAKPKSIKWKASPAFAMDF 538 >ref|YP_001242280.1| putative oligopeptide ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38374.1| Putative oligopeptide ABC transporter (substrate-binding protein) [Bradyrhizobium sp. BTAi1] Length = 545 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 203/538 (37%), Positives = 302/538 (56%), Gaps = 34/538 (6%) Query: 1 MLGLSRRYLLKT-IALGA--VLPAQAFGQS-ARPRIVVAVP--TQPDYVDPVMLNNTPAL 54 M L+RR LL A+G +LP + Q+ RP + +AV T + +D + + Sbjct: 1 MTKLTRRGLLGAGAAIGGSFILPRVSIAQADNRPSVTIAVQKVTNSNVLDVLREQSNVGE 60 Query: 55 RML-SNAFDGLLRIDFNDNMAVKPAIAESWRRLDSTTVEFTLRPGVKFHDGSTVTAGDIV 113 R+ S+ ++ L+ +F N+ P +A W+R+D TVE LR GVKFH+G +T+ D+V Sbjct: 61 RVFYSSLWESLISKNFRGNLEAVPGLATEWKRIDDQTVELKLRQGVKFHNGDEMTSEDVV 120 Query: 114 FSLGQERRFGPTGAGNTIALQYQQTIASVQP------------------------TGSST 149 FS +ER FG + A + ++ + I + +P T Sbjct: 121 FSFSRERMFGDSEAKSRTTIKAFEKIPTPRPGKELPPDVIGVARRMWPDLVRVDAVDKYT 180 Query: 150 VLVTTKIPDPAIDKKLAAWSAQIVSEAAFRKAGSWENWFKGPVGTGPYRVISNQKDISLV 209 V PD I+ +L + + I+S + +A S+ +W + P+ TGPY+++ + D+SL Sbjct: 181 VRFVNATPDVTIEGRLMRYGSDIMSRRGWEEAASYLDWARKPITTGPYKIVEFKPDVSLT 240 Query: 210 LKSHDEYWGGLPPFASIEFRIVPEVASRVNGLLAGEYDLISDLLPDQFESID-TSRFDVV 268 L++HDEYWGG PP I F VPEVASR+NGLL+GEY D+ PDQ I+ + F+V Sbjct: 241 LEAHDEYWGGRPPLKRIRFVEVPEVASRINGLLSGEYQFACDIPPDQIAGIEKNAAFEVQ 300 Query: 269 GGAIANLRVLAIDTTAPWLSDRRIRQALSFAIDRDLIITQLWRGRIDVPHGAQYPMFGDV 328 GG I N R+ D P L++ +R+A + AIDR I+ LW GR VP G Q+ +GD+ Sbjct: 301 GGTILNHRLTVFDKNHPQLANPLVRRAFTHAIDRQAIVDSLWAGRTRVPKGLQWEFYGDM 360 Query: 329 YDSSFPTPGYDPEKARGLLREAGYNGDPIVYRLLNNWYPNQVLTAQILVQMWKAVGLNVA 388 + + + P +DP+ A+ LL++AGY GDPI YRLLNN+Y NQV TAQ+LV+MW+AVGLNV Sbjct: 361 FIADWSVPAFDPKLAQDLLKQAGYKGDPIPYRLLNNYYTNQVATAQVLVEMWQAVGLNVQ 420 Query: 389 LHPMENFSQVYAK-PSHAIWDESFLPSWPDPTSMVWRQHGPGGSQHALKIWDSPQYHSVG 447 + EN+SQ+ + P+ A+ D S ++ DP S + QHGP G Q + W + + + + Sbjct: 421 IETKENWSQILERAPTRAVRDWSNSAAFNDPVSSLVAQHGPNGQQQQVGEWSNAELNKLS 480 Query: 448 AAFAKSSDNAERKELARRALEIFAEEVP-FIILHNNGAFYAKRRKLAWAPYSALVMDF 504 S+D RK+ RR LEI E P + +LH N F AK + + W A MDF Sbjct: 481 EFLETSTDREARKKAFRRMLEIAEREDPAYTVLHQNATFTAKPKSIKWKASPAFAMDF 538 >ref|YP_001203707.1| putative oligopeptide ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL75470.1| putative oligopeptide ABC transporter (substrate-binding protein) [Bradyrhizobium sp. ORS 278] Length = 545 Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 204/538 (37%), Positives = 302/538 (56%), Gaps = 34/538 (6%) Query: 1 MLGLSRRYLLKT-IALGA--VLPAQAFGQS-ARPRIVVAVP--TQPDYVDPVMLNNTPAL 54 M L+RR LL A+G +LP + QS RP + +AV T + +D + + Sbjct: 1 MTKLTRRSLLGAGAAIGGSFILPRVSIAQSDNRPSVTIAVQKVTNSNVLDVLREQSNVGE 60 Query: 55 RML-SNAFDGLLRIDFNDNMAVKPAIAESWRRLDSTTVEFTLRPGVKFHDGSTVTAGDIV 113 R+ S+ ++ L+ +F N+ P +A W+R+D TVE LR GVKFH+G +T+ D+V Sbjct: 61 RVFYSSLWESLISKNFRGNLEAVPGLATEWKRIDDQTVELKLRQGVKFHNGDEMTSEDVV 120 Query: 114 FSLGQERRFGPTGAGNTIALQYQQTIASVQP------------------------TGSST 149 FS +ER FG + A + ++ + I + +P T Sbjct: 121 FSFSRERMFGDSEAKSRTTIKAFEKIPTPRPGKELPPDVIGVARRMWPDLVRVDAVDKYT 180 Query: 150 VLVTTKIPDPAIDKKLAAWSAQIVSEAAFRKAGSWENWFKGPVGTGPYRVISNQKDISLV 209 V PD I+ +L + + I+S + +A S+ +W + P+ TGPY+++ + D+SL Sbjct: 181 VRFVNATPDVTIEGRLMRYGSDIMSRRGWEEAASYLDWARKPITTGPYKIVEFKPDVSLT 240 Query: 210 LKSHDEYWGGLPPFASIEFRIVPEVASRVNGLLAGEYDLISDLLPDQFESID-TSRFDVV 268 L++HDEYWGG PP I F VPEVASR+NGLL+GEY D+ PDQ I+ S F+V Sbjct: 241 LEAHDEYWGGRPPLKRIRFVEVPEVASRINGLLSGEYQFACDIPPDQIAGIEKNSAFEVQ 300 Query: 269 GGAIANLRVLAIDTTAPWLSDRRIRQALSFAIDRDLIITQLWRGRIDVPHGAQYPMFGDV 328 GG I N R+ D P L++ +R+A + AIDR I+ LW GR VP G Q+ +GD+ Sbjct: 301 GGTILNHRLTVFDKNHPQLANPLVRRAFTHAIDRQAIVDSLWAGRTRVPKGLQWEFYGDM 360 Query: 329 YDSSFPTPGYDPEKARGLLREAGYNGDPIVYRLLNNWYPNQVLTAQILVQMWKAVGLNVA 388 + + + P +DP+ A+ LL++AGY GDPI YRLLNN+Y NQV TAQ+LV+MW+AVGLNV Sbjct: 361 FIADWSVPAFDPKLAQDLLKQAGYKGDPIPYRLLNNYYTNQVATAQVLVEMWQAVGLNVQ 420 Query: 389 LHPMENFSQVYAK-PSHAIWDESFLPSWPDPTSMVWRQHGPGGSQHALKIWDSPQYHSVG 447 + EN+SQ+ + P+ A+ D S ++ DP S + QHGP G Q + + + + + + Sbjct: 421 IETKENWSQILERAPTRAVRDWSNSAAFNDPVSSLVAQHGPNGQQQQVGEYTNAELNKLS 480 Query: 448 AAFAKSSDNAERKELARRALEIFAEEVP-FIILHNNGAFYAKRRKLAWAPYSALVMDF 504 S+D A RK+ R LEI E P + +LH N F AK + + W A MDF Sbjct: 481 EFLETSTDRAARKKAFGRMLEIAEREDPAYTVLHQNATFTAKPKSIKWKASPAFAMDF 538