BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0001.p (531 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768643.1| hypothetical protein bll2003 [Bradyrhizobium ja... 813 0.0 emb|CCA86437.1| exported hypothetical protein [Ralstonia syzygii... 193 6e-47 ref|YP_555901.1| carbohydrate-selective porin OprB [Burkholderia... 160 6e-37 ref|YP_918395.1| carbohydrate-selective porin OprB [Paracoccus d... 154 5e-35 ref|YP_003039382.1| hypothetical protein PAU_00545 [Photorhabdus... 138 2e-30 >ref|NP_768643.1| hypothetical protein bll2003 [Bradyrhizobium japonicum USDA 110] gb|AAG60975.1|AF322013_94 ID668 [Bradyrhizobium japonicum] dbj|BAC47268.1| bll2003 [Bradyrhizobium japonicum USDA 110] Length = 556 Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/531 (76%), Positives = 445/531 (83%), Gaps = 2/531 (0%) Query: 1 VRDCFVAATTPRTSSAIAAFACSLRSSEPQRRLAVALSLAACLVGAPVSAQTADXPVPRS 60 +RDC +A T+PRT SA AA + +LR Q LA+ALSLAACLVG PV AQTA P + Sbjct: 28 MRDCLLATTSPRTYSATAALSFNLRPRGKQSGLAIALSLAACLVGNPVLAQTASGLDPSN 87 Query: 61 NAADQATKRRTLTPPDMATKLRIGVVNQPIRLHASASASAPNLPLIKPGSAGRVAQTQTR 120 + DQA+KR + D A KL I ++ Q IR A A A+ P +PL K G+A R AQT+ + Sbjct: 88 HPVDQASKRGKTS--DRAAKLPIDLICQAIRPPAPARAAGPGVPLEKRGNADRAAQTRPQ 145 Query: 121 KTIAPFARFDAFREKGIWLNIPGPADTIDQDKHGVRSVLADVGIGYIGWTHNTFANNQLP 180 KTI PF R+D REKG+W IPGPADTIDQDK GVRS LADVGIGYIGWTHN+FA+NQLP Sbjct: 146 KTIDPFQRYDNLREKGLWFPIPGPADTIDQDKGGVRSALADVGIGYIGWTHNSFASNQLP 205 Query: 181 NATRSSIANQLYMGQNPTFATTNFVIVTYDLSRFGIPDGQIVVGAEQQYWTWKRPGPDRV 240 +A RS+IANQLYMGQNPTFA+ NF+IVTYDLSRFGI DGQIVVGAEQQYWTW RPGPDRV Sbjct: 206 HAARSTIANQLYMGQNPTFASANFMIVTYDLSRFGIADGQIVVGAEQQYWTWDRPGPDRV 265 Query: 241 GLNTFAYYQTFFDRKFELKLGYLRNANEFTGTLFGGISGSNMFALFQAGMSTNAAPTPAA 300 GLNT AYYQTFF+R ELKLGYLRN NEFTGTLFGGI+GSNM ALFQAGMSTNAAPTPAA Sbjct: 266 GLNTLAYYQTFFNRTLELKLGYLRNQNEFTGTLFGGITGSNMSALFQAGMSTNAAPTPAA 325 Query: 301 NLKYNFDDHLYNKVSVQRSISPDGPYAQITENPSGLNWSTANAGILFIDELGYKSKAAPG 360 NLKYNFD LYNKVSVQRSISPDG YA ITENP+GL WSTANAGIL ++E GYKSKAAPG Sbjct: 326 NLKYNFDARLYNKVSVQRSISPDGAYAHITENPTGLKWSTANAGILLVEEAGYKSKAAPG 385 Query: 361 VPDTWLRAGIALNSSRYRNLADPDQQRESGNNFHYIAADRQLWQSDVEGTPSRGIYGGFS 420 VPDTWLRAG+ LN SRY NLADP QQRESGNNFHYIAADRQLWQSD G+PSRGIYGGFS Sbjct: 386 VPDTWLRAGVGLNRSRYTNLADPKQQRESGNNFHYIAADRQLWQSDALGSPSRGIYGGFS 445 Query: 421 IMGASPDLNRIGQYYELRLYAKGLFDSRPSDLIALVANNTTWSRFAVDAALAKGQLAHHD 480 +MGA P+ NRI +YYELRLYAKG FDSRPSDLIALVA NT WS+ AVDAALAKGQLAH D Sbjct: 446 VMGAPPERNRISRYYELRLYAKGPFDSRPSDLIALVATNTAWSKLAVDAALAKGQLAHRD 505 Query: 481 TTAITGTYTAHLAPGIYASLGLSYIHNPISVIHTPQTEHALNLLVSTLIFF 531 +TA+TGTY AHLAPGIYAS+GLSYIH P + HTPQTEHALNLL+STLIFF Sbjct: 506 STAVTGTYIAHLAPGIYASVGLSYIHYPTIITHTPQTEHALNLLISTLIFF 556 >emb|CCA86437.1| exported hypothetical protein [Ralstonia syzygii R24] Length = 533 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 147/437 (33%), Positives = 214/437 (48%), Gaps = 55/437 (12%) Query: 135 KGIWLNIPGPADTIDQDKHGVRSVLADVGIGYIGWTHNTFANNQL--------------- 179 KG + P D++ D R+ LA G G+ F +N L Sbjct: 102 KGWIVPFPSYGDSLVADDGYWRTNLASHGFGFSIQGSAIFQDNILNTPRRIPSSGFAPCG 161 Query: 180 PNATRSSIAN-QLYMGQNPTFATTNFVIVTYDLSRFGIPDGQIVVG------AEQQYWTW 232 PN+ + A + Y GQ P+ N +TYD+S++G+PDGQI +G ++QQY Sbjct: 162 PNSLDYNCAGGRSYFGQRPSIMAANSAFLTYDMSQYGVPDGQIAIGTNFGASSDQQY--- 218 Query: 233 KRPGPDRVGLNTFAYYQTFFDRKFELKLGYLRNANEFTGTLFGGIS----GSNMFALFQA 288 P+ N ++YQT FD++ E+K GY + EF GT GGI G + Sbjct: 219 ---TPNTFRFNGVSWYQTLFDKRLEIKAGYFASLPEFAGTFVGGIVVNPFGPSASVPIVL 275 Query: 289 GMSTNAAPTPAANLKYNFDDHLYNKVSVQRSISPDGP-----YAQITENPSGLNWSTANA 343 GMS N+ TP +K+N D LY + +VQRS+ G Y ++ NPSGL++ + + Sbjct: 276 GMSPNSISTPNFRVKWNATDTLYAQAAVQRSLPVRGMTGNSIYDEVNSNPSGLDFRSPVS 335 Query: 344 GI--LFIDELGYKSKAAPGVPDTWLRAGIALNSSRYRNLA----DPDQQRESGNNFHYIA 397 G LFI+E+GYK +A P WLRAG N+S + + + DP + + F Y+ Sbjct: 336 GTRELFINEVGYKRSSAVDKPFAWLRAGFMYNNSTFADFSRMHQDPGATKNGAHGF-YVL 394 Query: 398 ADRQLWQSDVEG--TPSRGIYGGFSIMGASPDLNRIGQYYELRLYAKGLFDSRPSDLIAL 455 AD QL Q+ T RG+Y G S M P QYYELR Y G F SRPSDL++ Sbjct: 395 ADYQLMQTAPASPHTAYRGMYVGASYMYGDPKSAPFTQYYELRAYWVGPFASRPSDLLSF 454 Query: 456 VANNTTWSRFAVDAALAKGQLAHHDTTA------ITGTYTAHLAPGIYASLGLSYIHNPI 509 V + S + ++ G A + +A IT +YT + PG+YA+ GL Y P Sbjct: 455 VVSRNKASGYL--QSVINGSSAFTNFSAISSANSITASYTYRVRPGLYATAGLGYTDKP- 511 Query: 510 SVIHTPQTEHALNLLVS 526 S+ + +LN+L+S Sbjct: 512 SLSYFNGQGSSLNVLLS 528 >ref|YP_555901.1| carbohydrate-selective porin OprB [Burkholderia xenovorans LB400] gb|ABE36551.1| Carbohydrate-selective porin OprB [Burkholderia xenovorans LB400] Length = 434 Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 132/434 (30%), Positives = 201/434 (46%), Gaps = 45/434 (10%) Query: 94 ASASASAPNLPLIKPGSAGRVAQTQTRKTIAPFARFDAFREKGIWLNIPGP-ADTIDQDK 152 A+A AP+ P+++P A AR DA + + P T+ D Sbjct: 9 AAAEEVAPS-PVVQPAPAAETTDC---------ARLDALNTRSRSAEVQMPVCQTMLSDI 58 Query: 153 HGVRSVLADVGIGY-----IGWTHNTFANNQLPNATRSSIANQLYMGQNPTFATTNFVIV 207 G R+ LAD GIG+ G ++ + + P QLY GQ+PT+ T+++ + Sbjct: 59 GGWRTWLADRGIGFQASALAGVNYDVLGHARTP---------QLYGGQSPTYNTSSYALF 109 Query: 208 TYDLSRFGIP-DGQIVVGAEQQYWTWKRPGPDRVGLNTFAYYQTFFDRKFELKLGYLRNA 266 TYDL+R G+P D Q+ V A+ Y P G A Q F + EL+ GY + Sbjct: 110 TYDLTRLGMPGDAQLTVKADW-YTNSYFPSIRYSGFTAVAINQRFLNGDVELQYGYFDLS 168 Query: 267 NEFTGTLFGGISGSNMFA-----LFQAGMSTNAAPTPAAN--LKYNFDDHLYNKVSVQRS 319 + F GT+ GG F L+ AG+S+ + PTPAA L+ H YN V RS Sbjct: 169 HSFYGTVLGGNPAVASFGPQSNVLYSAGISSES-PTPAAQIILRDPATQHFYNNFIVSRS 227 Query: 320 ISPDGPYAQITENPSGLNWSTANAGILFIDELGYKSKAAPGVPDTWLRAGIALNSSRYRN 379 SPDG + NP GL +S G LF+DE+GYK A+ W+R G +N+S Y Sbjct: 228 TSPDGQLVENRANPVGLRFSIPGDGALFVDEVGYKRDASVSSRSLWVRGGAVINTSDYPA 287 Query: 380 LADPDQQRESGNNFH----YIAADRQLWQSDVEGTPSRGIYGGFSIMGASPDLNRIGQYY 435 L D+ R ++ H Y AA QL + +RG+Y + + D+ Y Sbjct: 288 L---DKTRSQTSSLHNRAFYGAATAQLTSPYSD---ARGLYVDAKVDYSPSDVALFAHDY 341 Query: 436 ELRLYAKGLFDSRPSDLIALVANNTTWSRFAVDAALAKGQLAHHDTTAITGTYTAHLAPG 495 L + G F +R D+++L + + +S A+G + H T+++ +Y +LA G Sbjct: 342 SLTAFILGPFSTRRKDMVSLSWSQSFFSPEERRTLQARGADSAHSTSSLEISYALNLARG 401 Query: 496 IYASLGLSYIHNPI 509 +Y L+ NP+ Sbjct: 402 VYLISSLTRTWNPV 415 >ref|YP_918395.1| carbohydrate-selective porin OprB [Paracoccus denitrificans PD1222] gb|ABL72699.1| Carbohydrate-selective porin OprB [Paracoccus denitrificans PD1222] Length = 448 Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 129/414 (31%), Positives = 188/414 (45%), Gaps = 23/414 (5%) Query: 127 ARFDAFREKGIWLNIPGPADTIDQDKHGVRSVLADVGIGYIGWTHNTFANNQLPNATRSS 186 A++D +G + P + ID + G+R L G W L R + Sbjct: 48 AKYDQLNHRGSEVPYPSNCEAIDPELGGLREKLFSRG-----WNLQVVTTQGLTYDLRGN 102 Query: 187 IAN-QLYMGQNPTFATTNFVIVTYDLSRFGIPDGQIVVGAE-QQYWTWKRPGPDRVGLNT 244 Q+Y GQ PT + ++ T+DLSR+G+PDG ++ A Y ++ G +N Sbjct: 103 DGGPQIYTGQKPTANASVSLVFTHDLSRYGLPDGSLLTFAPVAGYTSFSGAGLSHAYINQ 162 Query: 245 FAYYQTFFDRKFELKLGYLRNANEFTGTLFG-----GISGSNMFALFQAGMSTNAAPTPA 299 + D + L+ G A++F G G G F L+ G+ PTPA Sbjct: 163 LSAMVPLNDGQVVLQAGQYNMASQFYGQAIGNNLAASALGPQSFILYGLGVG-GLKPTPA 221 Query: 300 ANLKYN-FDDHLYNKVSVQRSISPDGPYAQITENPSGLNWSTANAGILFIDELGYKSKAA 358 +++ + D Y V RSISPDG +A EN SGL +ST A +FI+E+GY+ + Sbjct: 222 FDIRLSSADKRFYTHFGVARSISPDGLFADGEENHSGLKFSTRGAKAVFINEVGYRVQPD 281 Query: 359 PGVPDTWLRAGIALNSSRYRNLADPDQQRESGNNF-HYIAADRQLWQSDVEGTPSRGIYG 417 + WLRAG N+S + +L DP +G N+ Y+ A QL Q D+ P RG Y Sbjct: 282 VNQRNIWLRAGAVYNTSDFAHLDDP---ATTGKNYGGYVVATYQLSQPDMS-APYRGWYF 337 Query: 418 GFSIMGASPDLNRIGQYYELRLYAKGLFDSRPSDLIALVANNTTWSRFAVDAALAKGQLA 477 S+ A +N L Y G F SRP D+ ++ A T +S V A G A Sbjct: 338 TGSVNFARKQVNAFSHDAGLVFYRIGTFKSRPYDVFSIGAAKTYFSDVVVQNATDLGLEA 397 Query: 478 HHDTTAITGTYTAHLAPGIYASLGLSYIHNPISVIHTPQTEHALNLLVS-TLIF 530 +T+ +YT L G Y ++YI NP P ALN V+ TL+F Sbjct: 398 ASSSTSFLASYTYRLQQGAYLQSAITYIDNPTLA---PVRPSALNASVNLTLVF 448 >ref|YP_003039382.1| hypothetical protein PAU_00545 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] emb|CAQ82637.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 426 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 123/400 (30%), Positives = 182/400 (45%), Gaps = 31/400 (7%) Query: 141 IPGPADTIDQDKHGVRSVLADVGIGYIGWTHNTFANNQ-LPNATR------SSIANQLYM 193 + DT+ + G+R +AD G +AN Q L N T + N YM Sbjct: 37 VSSACDTVFPEWGGLRKEMADRGF---------YANFQMLTNLTYDVSRNWKNTPNPNYM 87 Query: 194 GQNPTFATTNFVIVTYDLSRFGIPD-GQIVVGAEQQYWTWKRPGPD-RVGLNTFAYYQTF 251 GQ T +TYDLSR G D Q+ VG Y +K G D ++ F+ Q Sbjct: 88 GQRLTTGNMVMTELTYDLSRIGFTDKAQLRVGINYAYNNFKNNGQDGHPFISVFSINQPL 147 Query: 252 FDRKFELKLGYLRNANEFTGTLFGGISGSNMFA-----LFQAGMSTNAAPTPAANLKY-N 305 F+ + L GY + F G G + S+ L QAG+ + P+P+ ++++ + Sbjct: 148 FNDRVILNYGYTTLLSHFYGLFLGSSTASSALGPTSVMLSQAGLPS-TKPSPSLDIRFLS 206 Query: 306 FDDHLYNKVSVQRSISPDGPYAQITENPSGLNWSTANAGILFIDELGYKSKAAPGVPDTW 365 + Y+ + V RS S +G A N GL W +AG L I+ELGY+ A W Sbjct: 207 KNKRWYDHIGVARSQSSEGLKADSKYNTYGLRWKVPSAGTLVINELGYRVNADETENMIW 266 Query: 366 LRAGIALNSSRYRNLADPDQQRESGNNFHYIAADRQLWQSDVEGTPSRGIYGGFSIMGAS 425 +R G N + Y N + + E HYIAA RQ+ + D P RG Y A Sbjct: 267 IRGGSVFNKTPYFNYNN--SKYEDHTYSHYIAATRQITKPDAS-MPFRGWYIDGKANYAP 323 Query: 426 PDLNRIGQYYELRLYAKGLFDSRPSDLIALVANNTTWSRFAVDAALAKGQLAHHDTTAIT 485 D N L L++ GL DSRP+D++ + +S A + GQ+A + + Sbjct: 324 KDRNLFNADVSLSLFSIGLLDSRPNDMLTFGLSYNKFSDDAKNYFARNGQIAESYSATAS 383 Query: 486 GTYTAHLAPGIYASLGLSYIHNPISVIHTPQTEHALNLLV 525 +Y+ ++ GIY + LSY H+P SV TP+ + A NLL Sbjct: 384 ASYSYRVSNGIYWTNSLSYTHHP-SV--TPKEDDAYNLLT 420