BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0004.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01046018.1| flagellar FlbT [Nitrobacter sp. Nb-311A] >gi|...   223   5e-57
ref|NP_772487.1| flagellar biosynthesis repressor FlbT [Bradyrhi...   216   8e-55
ref|YP_317717.1| flagellar biosynthesis repressor FlbT [Nitrobac...   214   4e-54
ref|YP_576619.1| flagellar biosynthesis repressor FlbT [Nitrobac...   213   6e-54
ref|YP_004633542.1| flagellum biosynthesis repressor protein Flb...   204   4e-51

>ref|ZP_01046018.1| flagellar FlbT [Nitrobacter sp. Nb-311A]
 gb|EAQ36102.1| flagellar FlbT [Nitrobacter sp. Nb-311A]
          Length = 143

 Score =  223 bits (569), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 123/141 (87%), Gaps = 2/141 (1%)

Query: 1   MALKVELKPNERIIVGNCVITNTDQRARLLIDGDRIPILREKDILTPETADTPAKLIYLA 60
           MALKVELKP+ERII+G CV+TNTDQRARLLI+GD+IPILREKDILTPETADTPAKLIYLA
Sbjct: 1   MALKVELKPHERIIIGACVVTNTDQRARLLIEGDKIPILREKDILTPETADTPAKLIYLA 60

Query: 61  VQLMYLSPDPMAHHPTYFSLVRDIITAMPSAWPFIESVNNFILNGDLYHALKESKKLIAH 120
           VQLMYLSP+P  +H TYFSL+RDIIT MP AWP IE +NN ILNGDLY ALKE KKLIA+
Sbjct: 61  VQLMYLSPEPQINHGTYFSLLRDIITTMPGAWPIIEGINNDILNGDLYKALKEVKKLIAY 120

Query: 121 EEKLLETARDQQNADRDDARK 141
           EEKL++ ++    A R DARK
Sbjct: 121 EEKLMDGSK--VTAGRADARK 139


>ref|NP_772487.1| flagellar biosynthesis repressor FlbT [Bradyrhizobium japonicum
           USDA 110]
 sp|Q89HZ2.1|FLBT1_BRAJA RecName: Full=Probable flagellum biosynthesis repressor protein
           flbT 1
 dbj|BAC51112.1| blr5847 [Bradyrhizobium japonicum USDA 110]
          Length = 146

 Score =  216 bits (550), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 124/146 (84%), Gaps = 3/146 (2%)

Query: 1   MALKVELKPNERIIVGNCVITNTDQRARLLIDGDRIPILREKDILTPETADTPAKLIYLA 60
           MALKVELKP+ERIIVGN VITNTDQRARLLIDG+ +PILRE+DILTPETA+TPAKL+YLA
Sbjct: 1   MALKVELKPHERIIVGNSVITNTDQRARLLIDGENVPILRERDILTPETANTPAKLVYLA 60

Query: 61  VQLMYLSPDPMAHHPTYFSLVRDIITAMPSAWPFIESVNNFILNGDLYHALKESKKLIAH 120
           VQLMY+SPDP   H TYF+LVRDI+TA+PS+WP IE++NN ILNGDLY ALK+++KLIA+
Sbjct: 61  VQLMYISPDPQTQHGTYFNLVRDIVTAVPSSWPIIEAINNNILNGDLYRALKDARKLIAY 120

Query: 121 EEKL---LETARDQQNADRDDARKSA 143
           EEKL    E    +  AD+DD   +A
Sbjct: 121 EEKLRGQYEATHPKAEADKDDVSTAA 146


>ref|YP_317717.1| flagellar biosynthesis repressor FlbT [Nitrobacter winogradskyi
           Nb-255]
 gb|ABA04365.1| flagellar FlbT [Nitrobacter winogradskyi Nb-255]
          Length = 142

 Score =  214 bits (544), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 121/143 (84%), Gaps = 1/143 (0%)

Query: 1   MALKVELKPNERIIVGNCVITNTDQRARLLIDGDRIPILREKDILTPETADTPAKLIYLA 60
           MALKVELKP+ERII+G CV+TNTDQRARLLI+GD+IPILREKDILTPETADTPAKLIYLA
Sbjct: 1   MALKVELKPHERIIIGACVVTNTDQRARLLIEGDKIPILREKDILTPETADTPAKLIYLA 60

Query: 61  VQLMYLSPDPMAHHPTYFSLVRDIITAMPSAWPFIESVNNFILNGDLYHALKESKKLIAH 120
           VQLMYLSP+P  +H TYFSL+RD+IT MP AWP IE +NN ILNGDLY ALKE KKLIA+
Sbjct: 61  VQLMYLSPEPQINHGTYFSLLRDVITTMPGAWPIIEGINNDILNGDLYKALKEVKKLIAY 120

Query: 121 EEKLLETARDQQNADRDDARKSA 143
           E+KL + +    N    D R+SA
Sbjct: 121 EKKLADMSDTPPNR-AGDRRRSA 142


>ref|YP_576619.1| flagellar biosynthesis repressor FlbT [Nitrobacter hamburgensis
           X14]
 gb|ABE62159.1| flagellar FlbT [Nitrobacter hamburgensis X14]
          Length = 143

 Score =  213 bits (543), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 118/140 (84%), Gaps = 2/140 (1%)

Query: 1   MALKVELKPNERIIVGNCVITNTDQRARLLIDGDRIPILREKDILTPETADTPAKLIYLA 60
           MALKVEL+P+ERII+G CVITNTDQRA+LLI+G R PILREKDILTPETADTPAKLIYLA
Sbjct: 1   MALKVELRPHERIIIGACVITNTDQRAKLLIEGGRTPILREKDILTPETADTPAKLIYLA 60

Query: 61  VQLMYLSPDPMAHHPTYFSLVRDIITAMPSAWPFIESVNNFILNGDLYHALKESKKLIAH 120
           VQLMYL+P+P  +H TYFSL+RDIIT MP AWP IE +NN ILNGDLY ALKE KKLIA+
Sbjct: 61  VQLMYLAPEPQINHGTYFSLLRDIITTMPDAWPIIEGINNDILNGDLYKALKEVKKLIAY 120

Query: 121 EEKLLETARDQQNADRDDAR 140
           E+KL +T       DR DAR
Sbjct: 121 EKKLADTG--DSTTDRPDAR 138


>ref|YP_004633542.1| flagellum biosynthesis repressor protein FlbT [Oligotropha
           carboxidovorans OM5]
 gb|AEI03724.1| flagellum biosynthesis repressor protein FlbT [Oligotropha
           carboxidovorans OM4]
 gb|AEI07301.1| flagellum biosynthesis repressor protein FlbT [Oligotropha
           carboxidovorans OM5]
          Length = 141

 Score =  204 bits (519), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 117/136 (86%)

Query: 1   MALKVELKPNERIIVGNCVITNTDQRARLLIDGDRIPILREKDILTPETADTPAKLIYLA 60
           MALKVELKP+E+II+G+CVITNTDQRA+LLI+G+R+PILREKDILTP TADTPAKL+YLA
Sbjct: 1   MALKVELKPHEKIIIGSCVITNTDQRAKLLIEGERVPILREKDILTPATADTPAKLLYLA 60

Query: 61  VQLMYLSPDPMAHHPTYFSLVRDIITAMPSAWPFIESVNNFILNGDLYHALKESKKLIAH 120
           VQLMY++ DP  HHP YF L+RD+++AMPS+   I+ +NN IL+GD Y ALKES+KLIAH
Sbjct: 61  VQLMYVARDPQDHHPVYFDLMRDLLSAMPSSSLLIQEINNHILSGDYYRALKESRKLIAH 120

Query: 121 EEKLLETARDQQNADR 136
           E K+L TAR+   A +
Sbjct: 121 EAKILATARESAGAAK 136