BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0001.p (474 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002288366.1| flagellar basal body FlaE domain protein [Ol... 614 e-173 ref|ZP_07024999.1| fagellar hook-basal body protein [Afipia sp. ... 611 e-173 ref|NP_949269.1| flagellar hook protein flgE [Rhodopseudomonas p... 572 e-161 ref|YP_531366.1| hypothetical protein RPC_1485 [Rhodopseudomonas... 564 e-158 ref|YP_487422.1| hypothetical protein RPB_3817 [Rhodopseudomonas... 563 e-158 >ref|YP_002288366.1| flagellar basal body FlaE domain protein [Oligotropha carboxidovorans OM5] ref|YP_004633545.1| flagellar hook protein FlgE [Oligotropha carboxidovorans OM5] gb|ACI92501.1| flagellar basal body FlaE domain protein [Oligotropha carboxidovorans OM5] gb|AEI03727.1| flagellar hook protein FlgE [Oligotropha carboxidovorans OM4] gb|AEI07304.1| flagellar hook protein FlgE [Oligotropha carboxidovorans OM5] Length = 602 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 332/477 (69%), Positives = 386/477 (80%), Gaps = 14/477 (2%) Query: 1 VPIDPTTGNPAGSSPQVLQFKNDFLPAQQTTKIDYRANLASYPLTTAHDTSVPGSELIRP 60 +PIDPTTGN GS PQVL+F NDFLPAQ TT + YRANLASYPLTT HDTS+PGSELI Sbjct: 137 IPIDPTTGNVTGSVPQVLRFSNDFLPAQPTTAVTYRANLASYPLTTKHDTSIPGSELINV 196 Query: 61 GAFSSGNNPLVLGTPAAPYTDSAITGTAQNNKATPSVAITAATLLSGAAGTDSINTNFSA 120 G F++ NPL++GTP PYT+ A GT QN+K T IT +T LSG A TDS+ +F A Sbjct: 197 GDFTA--NPLIIGTPPQPYTNGAKNGTTQNSKLTTPTPITTSTTLSGLANTDSLGVDFVA 254 Query: 121 GSAGPPVVPADTITVNGTVITFVASGATGNQLN--VTDSIGTLLAKIDAITGTTT-PSTI 177 G +TITVNGT ITF +G T + N V +IG LLAKIDAI+G TT PST+ Sbjct: 255 G---------NTITVNGTTITFTVAGGTNDATNIPVDATIGDLLAKIDAISGNTTNPSTV 305 Query: 178 SGGKITLHSGKLADLNVTSSNSTAFAALGFTGSAVAVRGGGGTVGTGQVIGNDNSTFLNE 237 +GG +TL+SG +L V+S+NS+AF ALGFTG+ AVRGGGGT GTG VIG+D+ F++E Sbjct: 306 AGGVVTLNSGLAGNLTVSSNNSSAFGALGFTGTVTAVRGGGGTAGTGTVIGSDSKNFIDE 365 Query: 238 SVSGGAVTAYDVSGAPVNLQFRWAKTDSSSLGSGHTDTWNLFYQVNPNATGTQVSWQNVN 297 SVSGGA TAYD+SGAPV+LQFRWAKTDS+SLG+GH D WNLFYQ +PNATGTQV+WQNV Sbjct: 366 SVSGGATTAYDISGAPVSLQFRWAKTDSASLGAGHNDVWNLFYQTDPNATGTQVAWQNVG 425 Query: 298 VNFTFASNGQMSPAISSVALTNAVVNGVSLGSPVINFGSGGVTQFADANGNVQVNQIQQD 357 VNFTF NGQM+PA+ SV L NA + G++LG +NFG+ G+TQFADANGNVQVNQIQ D Sbjct: 426 VNFTFGPNGQMNPAVPSVTLANATIGGIALGDVTVNFGASGLTQFADANGNVQVNQIQND 485 Query: 358 GFPAGQLQSVSVSTNGRIVGNYTNGRNIDLAEISVATFNGTNFLKRIDGGAFEATDESGA 417 GFPAGQLQ+VS+S NGR+VGNY+NGRNIDLA I++ATFNG NFLKR+DGGAFE TDESG Sbjct: 486 GFPAGQLQTVSISNNGRVVGNYSNGRNIDLAAITLATFNGPNFLKRVDGGAFEVTDESGQ 545 Query: 418 ALFGKAGTIVGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTTNSMVQDLLNVVR 474 ALFGK GTIVGSSLE SNTDIADEFTKLIVTQQAYSANTKVITT+N MVQDLLNV+R Sbjct: 546 ALFGKGGTIVGSSLEGSNTDIADEFTKLIVTQQAYSANTKVITTSNQMVQDLLNVLR 602 >ref|ZP_07024999.1| fagellar hook-basal body protein [Afipia sp. 1NLS2] gb|EFI52141.1| fagellar hook-basal body protein [Afipia sp. 1NLS2] Length = 604 Score = 611 bits (1576), Expect = e-173, Method: Compositional matrix adjust. Identities = 331/479 (69%), Positives = 385/479 (80%), Gaps = 16/479 (3%) Query: 1 VPIDPTTGNPAGSSPQVLQFKNDFLPAQQTTKIDYRANLASYPLTTAHDTSVPGSELIRP 60 +PIDPTTGN GS P VL+F NDFLPAQ TT + YRANLASYPLTT HDTSVPGSEL+ Sbjct: 137 IPIDPTTGNVTGSVPTVLKFGNDFLPAQPTTTVTYRANLASYPLTTKHDTSVPGSELLNV 196 Query: 61 GAFSSGNNPLVLGTPAAPYTDSAITGTAQNNKATPSVAITAATLLSGAAGTDSINTNFSA 120 G F++ NPL++GTPA PY + + G+ QN+K T + IT+ATLLSGA TDSI T+F+A Sbjct: 197 GDFTA--NPLIVGTPAQPYINGSKNGSVQNSKLTTATQITSATLLSGATNTDSIATDFTA 254 Query: 121 GSAGPPVVPADTITVNGTV-ITFVASGATGN--QLNVTDSIGTLLAKIDAITGTTT-PST 176 G +TITVNGT ITF ASG + + V +I LLAKIDA G TT PS+ Sbjct: 255 G---------NTITVNGTTTITFTASGGLDDATHIPVDGTIADLLAKIDAANGNTTNPSS 305 Query: 177 ISGGKITLHSGKLADLNVTSSNSTAFAALGF-TGSAVAVRGGGGTVGTGQVIGNDNSTFL 235 +SGG ITL++G +L VTSSN+ AFAALGF T + A R GGGT GTG VIG+D+ F+ Sbjct: 306 VSGGVITLNTGLANNLTVTSSNAAAFAALGFSTATVTASRTGGGTAGTGTVIGSDSQNFI 365 Query: 236 NESVSGGAVTAYDVSGAPVNLQFRWAKTDSSSLGSGHTDTWNLFYQVNPNATGTQVSWQN 295 +ESVSGGA TAYDVSGAPV+LQ RWAKTDS+SLG+GH+D WNLFYQ NPNATGT V+WQN Sbjct: 366 DESVSGGATTAYDVSGAPVSLQLRWAKTDSASLGAGHSDVWNLFYQTNPNATGTDVAWQN 425 Query: 296 VNVNFTFASNGQMSPAISSVALTNAVVNGVSLGSPVINFGSGGVTQFADANGNVQVNQIQ 355 V VNFTF +NGQM+PA+ SV LTNA + G++LG +NFG+ G+TQFADANGNVQVNQIQ Sbjct: 426 VGVNFTFGANGQMNPAVPSVTLTNATIGGIALGDVTMNFGATGLTQFADANGNVQVNQIQ 485 Query: 356 QDGFPAGQLQSVSVSTNGRIVGNYTNGRNIDLAEISVATFNGTNFLKRIDGGAFEATDES 415 DGFPAGQLQ+VS+S NGR+VGNY+NGRNIDLA I++ATFNG NFLKR+DGGAFE TDES Sbjct: 486 NDGFPAGQLQTVSISNNGRVVGNYSNGRNIDLAAITLATFNGPNFLKRVDGGAFEVTDES 545 Query: 416 GAALFGKAGTIVGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTTNSMVQDLLNVVR 474 G ALFGK GTIVGSSLE SNTDIADEFTKLIVTQQAYSANTKVITT+N MVQDLLNV+R Sbjct: 546 GQALFGKGGTIVGSSLEGSNTDIADEFTKLIVTQQAYSANTKVITTSNQMVQDLLNVLR 604 >ref|NP_949269.1| flagellar hook protein flgE [Rhodopseudomonas palustris CGA009] ref|YP_001993426.1| hypothetical protein Rpal_4455 [Rhodopseudomonas palustris TIE-1] emb|CAE29373.1| probable flagellar hook protein flgE [Rhodopseudomonas palustris CGA009] gb|ACF02951.1| protein of unknown function DUF1078 domain protein [Rhodopseudomonas palustris TIE-1] Length = 598 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 312/476 (65%), Positives = 369/476 (77%), Gaps = 16/476 (3%) Query: 1 VPIDPTTGNPAGSSPQVLQFKNDFLPAQQTTKIDYRANLASYPLTTAHDTSVPGSELIRP 60 V IDPTTGNP G SP VL+F+NDFLP+Q TTKI YRANLASYPLTT HD S+PGSEL+R Sbjct: 137 VKIDPTTGNPVGGSPGVLKFQNDFLPSQATTKISYRANLASYPLTTKHDKSIPGSELLRA 196 Query: 61 GAFSSGNNPLVLGTPAAPYTDSAITGTAQNNKATPSVAITAATLLSGAAGTDSINTNFSA 120 F++ NP VLGT P++D++ TG NNK V IT AT LSG AG+DSI +F+ Sbjct: 197 ADFAT--NPQVLGTTPPPFSDNSKTGLQINNKQ--GVPITGATKLSGVAGSDSIGVDFAV 252 Query: 121 GSAGPPVVPADTITVNGTVITFVASGATGN--QLNVTDSIGTLLAKIDAITGTTTPSTIS 178 G +TITVNGT ITF ASG T + + + +I LL+KIDAI+ ST++ Sbjct: 253 G---------NTITVNGTAITFTASGGTDDATHIPIDSTIANLLSKIDAISAGGAASTVT 303 Query: 179 GGKITLHSGKLADLNVTSSNSTAFAALGFTGSAVAVRGGGGTVGTGQVIGNDNSTFLNES 238 G + LH+G +DL +TS + AFA+LG T VR GGG+VGTG+V G DN TFL+ES Sbjct: 304 SGAVVLHTGVASDLAMTSG-AAAFASLGLTSPVNVVRNGGGSVGTGKVTGVDNQTFLDES 362 Query: 239 VSGGAVTAYDVSGAPVNLQFRWAKTDSSSLGSGHTDTWNLFYQVNPNATGTQVSWQNVNV 298 VSGG+ TAYD +GAPVN+QFRWAK DS++LG+GHTD WNLFYQVNPNATGTQ +WQNVN Sbjct: 363 VSGGSTTAYDGNGAPVNVQFRWAKVDSATLGTGHTDVWNLFYQVNPNATGTQTAWQNVNT 422 Query: 299 NFTFASNGQMSPAISSVALTNAVVNGVSLGSPVINFGSGGVTQFADANGNVQVNQIQQDG 358 NFTFASNGQMSP I + LT V+GVSLG + FG+GG+TQF+D NGNVQVNQ+QQDG Sbjct: 423 NFTFASNGQMSPVIGQITLTGLTVSGVSLGDVTMAFGTGGLTQFSDTNGNVQVNQLQQDG 482 Query: 359 FPAGQLQSVSVSTNGRIVGNYTNGRNIDLAEISVATFNGTNFLKRIDGGAFEATDESGAA 418 + AGQL SVSVS +GR+VG Y+NGRNIDLAE+SVATFNG NFLKR DGGAFE T+ESG Sbjct: 483 YSAGQLVSVSVSNDGRVVGAYSNGRNIDLAEVSVATFNGANFLKRTDGGAFEITNESGQP 542 Query: 419 LFGKAGTIVGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTTNSMVQDLLNVVR 474 L+GK G++ GSSLESSNTDIADEFTKLIVTQQAYSANTKVITT N+MVQDLLNV+R Sbjct: 543 LYGKGGSVSGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDLLNVMR 598 >ref|YP_531366.1| hypothetical protein RPC_1485 [Rhodopseudomonas palustris BisB18] gb|ABD87047.1| protein of unknown function DUF1078-like [Rhodopseudomonas palustris BisB18] Length = 599 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 306/477 (64%), Positives = 367/477 (76%), Gaps = 17/477 (3%) Query: 1 VPIDPTTGNPAGSSPQVLQFKNDFLPAQQTTKIDYRANLASYPLTTAHDTSVPGSELIRP 60 V ID TTGNP+G +P +L+F+NDFLP+QQTTKI YRANLASYPLT+ HDTSVPGSEL+RP Sbjct: 137 VTIDRTTGNPSGGAPAILKFQNDFLPSQQTTKISYRANLASYPLTSKHDTSVPGSELLRP 196 Query: 61 GAFSSGNNPLVLGTPAAPYTDSAITGTAQNNKATPSVAITAATLLSGAAGTDSINTNFSA 120 FS NP V GT P+ D+ +G N+K + AIT AT LSGA+ +DS N NF+ Sbjct: 197 ADFSV--NPQVNGTQPPPFGDNTKSGLQVNSKN--ATAITGATKLSGASPSDSTNVNFAV 252 Query: 121 GSAGPPVVPADTITVNGTVITFVASGAT--GNQLNVTDSIGTLLAKIDAITGT-TTPSTI 177 G DT+ VNGT I ASG G + V +I LL KIDA++G TPST+ Sbjct: 253 G---------DTVKVNGTDIIVTASGGLDDGTHIPVDSTITNLLGKIDALSGNNVTPSTV 303 Query: 178 SGGKITLHSGKLADLNVTSSNSTAFAALGFTGSAVAVRGGGGTVGTGQVIGNDNSTFLNE 237 +GG + LH+G ADL++ S+ S FA+LG T VR GGG+VGTG+V+G+DN TFL+E Sbjct: 304 TGGGVVLHTGTAADLSIVST-SAGFASLGLTSPVTVVRTGGGSVGTGKVVGSDNQTFLDE 362 Query: 238 SVSGGAVTAYDVSGAPVNLQFRWAKTDSSSLGSGHTDTWNLFYQVNPNATGTQVSWQNVN 297 S+SGGA TAYD +GAPV +QFRWAKTDS++LG GH DTWNLFYQ NP ATG SW NV Sbjct: 363 SISGGATTAYDGNGAPVPVQFRWAKTDSATLGVGHNDTWNLFYQTNPAATGANTSWVNVG 422 Query: 298 VNFTFASNGQMSPAISSVALTNAVVNGVSLGSPVINFGSGGVTQFADANGNVQVNQIQQD 357 NF+F SNG+M+P I ++ LTN V+GVSLG+ ++FG+GG+TQFAD NGNVQVNQ+QQD Sbjct: 423 TNFSFGSNGEMNPVIGALTLTNLTVSGVSLGNVTMSFGTGGLTQFADTNGNVQVNQMQQD 482 Query: 358 GFPAGQLQSVSVSTNGRIVGNYTNGRNIDLAEISVATFNGTNFLKRIDGGAFEATDESGA 417 G+ AGQL SVSVS GR+VG Y+NGRNIDLAE+SVATFNG NFLKR+DGGAFE T+ESGA Sbjct: 483 GYAAGQLTSVSVSNEGRVVGAYSNGRNIDLAEVSVATFNGANFLKRLDGGAFEVTNESGA 542 Query: 418 ALFGKAGTIVGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTTNSMVQDLLNVVR 474 ALFGK G+I GSSLE+SNTDIADEFTKLIVTQQAYSANTKVITT N+MV DLLNV+R Sbjct: 543 ALFGKGGSISGSSLEASNTDIADEFTKLIVTQQAYSANTKVITTANTMVSDLLNVIR 599 >ref|YP_487422.1| hypothetical protein RPB_3817 [Rhodopseudomonas palustris HaA2] gb|ABD08511.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 598 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 319/477 (66%), Positives = 375/477 (78%), Gaps = 18/477 (3%) Query: 1 VPIDPTTGNPAGSSPQVLQFKNDFLPAQQTTKIDYRANLASYPLTTAHDTSVPGSELIRP 60 V IDPTTGNP GS+P VL+F+NDFLP+Q+TTKI+YRANLA YPLTT DTS+PGSEL+R Sbjct: 137 VAIDPTTGNPVGSTPTVLKFQNDFLPSQETTKINYRANLARYPLTTKQDTSIPGSELLRA 196 Query: 61 GAFSSGNNPLVLGTPAAPYTDSAITGTAQNNK-ATPSVAITAATLLSGAAGTDSINTNFS 119 F+ NNP V GT P+ D++ G N K ATP IT AT LSGAA TDSI NF+ Sbjct: 197 ADFA--NNPQVSGTTPPPFGDNSRAGLQINAKDATP---ITGATTLSGAASTDSIGVNFA 251 Query: 120 AGSAGPPVVPADTITVNGTVITFVASGATGNQLN--VTDSIGTLLAKIDAITGTTTPSTI 177 G DTI VNGT ITF ASG T + N V +I LL+KIDAI+G ST+ Sbjct: 252 VG---------DTIVVNGTTITFTASGGTDDATNIPVDSTITNLLSKIDAISGGGAASTV 302 Query: 178 SGGKITLHSGKLADLNVTSSNSTAFAALGFTGSAVAVRGGGGTVGTGQVIGNDNSTFLNE 237 + G + LH+G +DL +TS+ S AFA+LG T +R GGGTVGTGQVIG DN TFL+E Sbjct: 303 TSGALELHTGTASDLTITST-SAAFASLGLTSPFSVIRTGGGTVGTGQVIGTDNQTFLDE 361 Query: 238 SVSGGAVTAYDVSGAPVNLQFRWAKTDSSSLGSGHTDTWNLFYQVNPNATGTQVSWQNVN 297 S+SGGA TAYD SGAPVN+QFRWAK DS++LG+GH+D WNLFYQVNP+ATGT V+WQNVN Sbjct: 362 SISGGATTAYDGSGAPVNVQFRWAKIDSATLGTGHSDVWNLFYQVNPDATGTAVAWQNVN 421 Query: 298 VNFTFASNGQMSPAISSVALTNAVVNGVSLGSPVINFGSGGVTQFADANGNVQVNQIQQD 357 NFTF S+GQM+P I + LTN V+GVSLG+ ++FG+GG+TQF+D NGNVQVNQ+QQD Sbjct: 422 TNFTFNSSGQMNPVIGQLTLTNLTVSGVSLGNVTMSFGTGGLTQFSDTNGNVQVNQLQQD 481 Query: 358 GFPAGQLQSVSVSTNGRIVGNYTNGRNIDLAEISVATFNGTNFLKRIDGGAFEATDESGA 417 G+ AGQL SVSVS GR+VG+Y+NGRNIDLAE+SVATFNG NFLKRIDGGAFE T+ESG Sbjct: 482 GYAAGQLTSVSVSNEGRVVGSYSNGRNIDLAEVSVATFNGANFLKRIDGGAFEVTNESGE 541 Query: 418 ALFGKAGTIVGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTTNSMVQDLLNVVR 474 AL+GK G+I GSSLESSNTDIADEFTKLIVTQQAYSANTKVITT N+MVQDLLNV+R Sbjct: 542 ALYGKGGSISGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDLLNVMR 598