BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0125.p (341 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773094.1| ABC transporter permease protein [Bradyrhizobiu... 522 e-146 ref|YP_001206333.1| putative alkanesulfonate ABC transporter per... 482 e-134 ref|YP_004108777.1| binding-protein-dependent transporter inner ... 439 e-121 ref|YP_001991672.1| ABC transporter inner membrane protein [Rhod... 438 e-121 ref|YP_003451470.1| alkanesulfonate ABC transporter permease pro... 370 e-100 >ref|NP_773094.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51719.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 340 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 291/343 (84%), Positives = 307/343 (89%), Gaps = 5/343 (1%) Query: 1 MSTYSVSDTTAAAAPRAAVT--FSDLSGGYGVGLAASLVWLAFGLSCLYWPDVGDWSRTG 58 MSTYS+SD A+ APR A + GVG+ AS+ W+AFGLSCL+W DVGDWSRT Sbjct: 1 MSTYSLSDGLASGAPRLARAPLLASWVRESGVGILASVAWIAFGLSCLWWEDVGDWSRTH 60 Query: 59 SLGIGAIVIAAFILFGTFSADYLGGAGQALRKRAPWLVAFGAFVTLWEVATAKFAWLPLP 118 SLGI A VIAA LFGT ADYLG AG+AL KRAPWLVA GAF+TLWEVATAKFAWLPLP Sbjct: 61 SLGIAAFVIAAVALFGTVGADYLGSAGKALHKRAPWLVALGAFLTLWEVATAKFAWLPLP 120 Query: 119 FFPPPQSILEVYTDDLPKLLDSVFASIKLQLGGYLIGATVGFITGVSIGWSQKIGYWVHP 178 FFPPPQSI+EVYTDDLPKLLDSVFAS+KLQLGGYLIGAT+GF+TGVSIGWS+ +GYWVHP Sbjct: 121 FFPPPQSIIEVYTDDLPKLLDSVFASVKLQLGGYLIGATIGFLTGVSIGWSRAVGYWVHP 180 Query: 179 VLRFIGPLPATAWLPIAFFTFPSSWSASTFLIALATGFPVTVLTWSGVASVSSAYYDVAR 238 VLRFIGPLPATAWLPIAFFTFPSSWSASTFLIALATGFPVTVLTWSGVASVS+AYYDVAR Sbjct: 181 VLRFIGPLPATAWLPIAFFTFPSSWSASTFLIALATGFPVTVLTWSGVASVSNAYYDVAR 240 Query: 239 TLGAKPSFLVLKVAIPAALPHVFVGLFMGLGSSFAVLVVAEMIGVKAGQKKNGWYLQWAQ 298 TLGAKPSFLVLKVAIPAALPHVFVGLFMGLGSSFAVLVVAEMIGVKAG GWYLQWAQ Sbjct: 241 TLGAKPSFLVLKVAIPAALPHVFVGLFMGLGSSFAVLVVAEMIGVKAGL---GWYLQWAQ 297 Query: 299 GWAAYANMYAALIVMSLLCSGAITLLFRTRDRLLVWQKGVVKW 341 GWAAYANMYAALIVMSLLCSGAITLLF RDRLLVWQKG VKW Sbjct: 298 GWAAYANMYAALIVMSLLCSGAITLLFAIRDRLLVWQKGTVKW 340 >ref|YP_001206333.1| putative alkanesulfonate ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL78110.1| putative alkanesulfonate ABC transporter, permease protein [Bradyrhizobium sp. ORS 278] Length = 337 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 262/341 (76%), Positives = 291/341 (85%), Gaps = 4/341 (1%) Query: 1 MSTYSVSDTTAAAAPRAAVTFSDLSGGYGVGLAASLVWLAFGLSCLYWPDVGDWSRTGSL 60 MST+S+S+T RA + L G+AA+L W FG SC DVGDWSRT L Sbjct: 1 MSTFSLSETAGGDIARATGLGAKLRD-IAPGIAAALAWALFGASCFVREDVGDWSRTTDL 59 Query: 61 GIGAIVIAAFILFGTFSADYLGGAGQALRKRAPWLVAFGAFVTLWEVATAKFAWLPLPFF 120 + A VIAA +L + +A LG AG ALR+R+PWL+A G F+TLWE+ATAKFAWLPLPFF Sbjct: 60 AVAAFVIAALVLVSSIAALRLGRAGAALRRRSPWLLALGVFLTLWELATAKFAWLPLPFF 119 Query: 121 PPPQSILEVYTDDLPKLLDSVFASIKLQLGGYLIGATVGFITGVSIGWSQKIGYWVHPVL 180 PPPQ+I+EVYTDDLPKLLDSV ASIKLQLGGY IGA +GF+TGVSIGWS +IGYWVHPVL Sbjct: 120 PPPQAIIEVYTDDLPKLLDSVVASIKLQLGGYAIGAAIGFVTGVSIGWSTRIGYWVHPVL 179 Query: 181 RFIGPLPATAWLPIAFFTFPSSWSASTFLIALATGFPVTVLTWSGVASVSSAYYDVARTL 240 RFIGP+PATAWLPIAFFTFP+SWSASTFLIALATGFPVTVLTWSGVASV +AYYDVARTL Sbjct: 180 RFIGPVPATAWLPIAFFTFPTSWSASTFLIALATGFPVTVLTWSGVASVPTAYYDVARTL 239 Query: 241 GAKPSFLVLKVAIPAALPHVFVGLFMGLGSSFAVLVVAEMIGVKAGQKKNGWYLQWAQGW 300 GA+P FLVLKVAIPAALPHVFVGLFMGLG+SFAVLV+AEMIGVKAG GWYLQWAQGW Sbjct: 240 GARPWFLVLKVAIPAALPHVFVGLFMGLGASFAVLVIAEMIGVKAGL---GWYLQWAQGW 296 Query: 301 AAYANMYAALIVMSLLCSGAITLLFRTRDRLLVWQKGVVKW 341 AAYANMYAAL+VMSLLCSGAITLLF+TRDR+LVWQKGVVKW Sbjct: 297 AAYANMYAALLVMSLLCSGAITLLFKTRDRVLVWQKGVVKW 337 >ref|YP_004108777.1| binding-protein-dependent transporter inner membrane component [Rhodopseudomonas palustris DX-1] gb|ADU44044.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris DX-1] Length = 342 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 249/346 (71%), Positives = 278/346 (80%), Gaps = 9/346 (2%) Query: 1 MSTYSVSDTT-----AAAAPRAAVTFSDLSGGYGVGLAASLVWLAFGLSCLYWPDVGDWS 55 M TYS S+T A R L G + VG AASL W+AFGLSCL+ D+GDW+ Sbjct: 1 MPTYSASETLDLDVGTRLASRTPSLLRALRGHF-VGFAASLGWIAFGLSCLWREDIGDWT 59 Query: 56 RTGSLGIGAIVIAAFILFGTFSADYLGGAGQALRKRAPWLVAFGAFVTLWEVATAKFAWL 115 RT + I A V I + + G++L++R+PWL+ G + LWEV TAK L Sbjct: 60 RTKEVAIAAFVFGGAIAIAAVAGFWSQRVGESLQRRSPWLLLLGVVLALWEVLTAKLGVL 119 Query: 116 PLPFFPPPQSILEVYTDDLPKLLDSVFASIKLQLGGYLIGATVGFITGVSIGWSQKIGYW 175 PLPFFPPPQ+I+EVYTDD KL DSVFAS+KLQLGGYLIGA VGF+TGVSIGWS+ +GYW Sbjct: 120 PLPFFPPPQAIVEVYTDDFVKLFDSVFASVKLQLGGYLIGAAVGFVTGVSIGWSRAVGYW 179 Query: 176 VHPVLRFIGPLPATAWLPIAFFTFPSSWSASTFLIALATGFPVTVLTWSGVASVSSAYYD 235 VHPVLRFIGPLPATAWLPIAFF FPSSWSASTFLIALATGFPVTVLTWSGVASVS+AYYD Sbjct: 180 VHPVLRFIGPLPATAWLPIAFFAFPSSWSASTFLIALATGFPVTVLTWSGVASVSNAYYD 239 Query: 236 VARTLGAKPSFLVLKVAIPAALPHVFVGLFMGLGSSFAVLVVAEMIGVKAGQKKNGWYLQ 295 VARTLGA+PSFLV KVAIPAALPHVFVGLFMGLG+SFAVLVVAEM+GVK+G GWYLQ Sbjct: 240 VARTLGARPSFLVFKVAIPAALPHVFVGLFMGLGASFAVLVVAEMMGVKSGL---GWYLQ 296 Query: 296 WAQGWAAYANMYAALIVMSLLCSGAITLLFRTRDRLLVWQKGVVKW 341 WAQGWAAYANMYAAL+VMSLLCSGAIT LF+ RDRLLVWQKGVVKW Sbjct: 297 WAQGWAAYANMYAALLVMSLLCSGAITALFKVRDRLLVWQKGVVKW 342 >ref|YP_001991672.1| ABC transporter inner membrane protein [Rhodopseudomonas palustris TIE-1] gb|ACF01197.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris TIE-1] Length = 342 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 249/346 (71%), Positives = 277/346 (80%), Gaps = 9/346 (2%) Query: 1 MSTYSVSDTT-----AAAAPRAAVTFSDLSGGYGVGLAASLVWLAFGLSCLYWPDVGDWS 55 M TYS S+T A R L G + VG AASL W+AFGLSCL+ D+GDW+ Sbjct: 1 MPTYSASETLDLDVGTRLASRTPSLLRALRGHF-VGFAASLGWIAFGLSCLWREDIGDWT 59 Query: 56 RTGSLGIGAIVIAAFILFGTFSADYLGGAGQALRKRAPWLVAFGAFVTLWEVATAKFAWL 115 RT + I A V I + + G++L++R+PWL+ G + LWEV TAK L Sbjct: 60 RTKEVAIAAFVFGGAIAIAAVAGFWSQRVGESLQRRSPWLLLLGVVLALWEVLTAKLGVL 119 Query: 116 PLPFFPPPQSILEVYTDDLPKLLDSVFASIKLQLGGYLIGATVGFITGVSIGWSQKIGYW 175 PLPFFPPPQ+I+EVYTDD KL DSVFAS+KLQLGGYLIGA GF+TGVSIGWS+ +GYW Sbjct: 120 PLPFFPPPQAIVEVYTDDFVKLFDSVFASVKLQLGGYLIGAAAGFVTGVSIGWSRAVGYW 179 Query: 176 VHPVLRFIGPLPATAWLPIAFFTFPSSWSASTFLIALATGFPVTVLTWSGVASVSSAYYD 235 VHPVLRFIGPLPATAWLPIAFF FPSSWSASTFLIALATGFPVTVLTWSGVASVS+AYYD Sbjct: 180 VHPVLRFIGPLPATAWLPIAFFAFPSSWSASTFLIALATGFPVTVLTWSGVASVSNAYYD 239 Query: 236 VARTLGAKPSFLVLKVAIPAALPHVFVGLFMGLGSSFAVLVVAEMIGVKAGQKKNGWYLQ 295 VARTLGAKPSFLV KVAIPAALPHVFVGLFMGLG+SFAVLVVAEM+GVK+G GWYLQ Sbjct: 240 VARTLGAKPSFLVFKVAIPAALPHVFVGLFMGLGASFAVLVVAEMMGVKSGL---GWYLQ 296 Query: 296 WAQGWAAYANMYAALIVMSLLCSGAITLLFRTRDRLLVWQKGVVKW 341 WAQGWAAYANMYAAL+VMSLLCSGAIT LF+ RDRLLVWQKGVVKW Sbjct: 297 WAQGWAAYANMYAALLVMSLLCSGAITALFKVRDRLLVWQKGVVKW 342 >ref|YP_003451470.1| alkanesulfonate ABC transporter permease protein [Azospirillum sp. B510] dbj|BAI74926.1| alkanesulfonate ABC transporter permease protein [Azospirillum sp. B510] Length = 350 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 200/321 (62%), Positives = 238/321 (74%), Gaps = 16/321 (4%) Query: 33 AASLVW-LAFGLSCLYWPDVGD---WSRTGSLG--------IGAIVIAAFILFGTFSADY 80 AA+L W LA G++ L WPD D W RTG+ + A+ LF Sbjct: 34 AAALPWFLAAGVTAL-WPDAADAQEWERTGAFASLLVVAAGLLALAAPLTALFRPAPRGR 92 Query: 81 LGGAGQALRKRAPWLVAFGAFVTLWEVATAKFAWLPLPFFPPPQSILEVYTDDLPKLLDS 140 L L PWL+A +T WE+ TAK LP PFF PPQ++LEVY DD P+LLD Sbjct: 93 LAPVIAGLSASVPWLIALALGLTGWEILTAKLNLLPRPFFVPPQALLEVYLDDWPRLLDC 152 Query: 141 VFASIKLQLGGYLIGATVGFITGVSIGWSQKIGYWVHPVLRFIGPLPATAWLPIAFFTFP 200 AS++L + GY +G+ +G +TGV+IGWS+ +GYWVHPVLR IGPLPATAWLPIAFF FP Sbjct: 153 FAASLRLLVTGYAVGSILGVVTGVAIGWSRAVGYWVHPVLRLIGPLPATAWLPIAFFAFP 212 Query: 201 SSWSASTFLIALATGFPVTVLTWSGVASVSSAYYDVARTLGAKPSFLVLKVAIPAALPHV 260 +SWSAS FLIALA+G PVT+LTWSGVA V+SAYYD+ARTLGA FLVLKVA+PAA+PHV Sbjct: 213 TSWSASVFLIALASGVPVTILTWSGVAGVNSAYYDIARTLGASNRFLVLKVAVPAAMPHV 272 Query: 261 FVGLFMGLGSSFAVLVVAEMIGVKAGQKKNGWYLQWAQGWAAYANMYAALIVMSLLCSGA 320 FVGLFMGLG++FAVLVVAEM+GVK+G GWYLQWAQGWAAY NMYAAL+VM+LLCSG Sbjct: 273 FVGLFMGLGAAFAVLVVAEMLGVKSGV---GWYLQWAQGWAAYGNMYAALLVMALLCSGL 329 Query: 321 ITLLFRTRDRLLVWQKGVVKW 341 +TLLFR RDRLL WQKG++KW Sbjct: 330 VTLLFRVRDRLLAWQKGMLKW 350