BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0124.p (365 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773095.1| ABC transporter substrate-binding protein [Brad... 639 0.0 ref|YP_001239313.1| putative alkanesulfonate ABC transporter sub... 556 e-156 ref|YP_001206334.1| putative alkanesulfonate ABC transporter sub... 553 e-155 ref|YP_001991671.1| ABC transporter substrate-binding protein [R... 503 e-140 ref|YP_004108776.1| ABC transporter substrate-binding protein [R... 490 e-136 >ref|NP_773095.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51720.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 366 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/366 (87%), Positives = 341/366 (93%), Gaps = 2/366 (0%) Query: 2 MSRDNKK--TVMDRRTLLRAGAAAALAAPIGAYSAQAFAPRAITPAIDFSEFPICKTASD 59 M+ +NK+ + + RR LL+AG AAA AAP+GA AQAFAP+ I IDFSEFP+C+ ASD Sbjct: 1 MNNENKRGGSSLHRRHLLQAGLAAAFAAPLGALGAQAFAPQPIGSGIDFSEFPLCRMASD 60 Query: 60 APVLTGAPRKLKLSWNAGAVCLAPLPVAIDHGFFQKQNLDVELVNYSGSTDQLLEAIATG 119 AP LTGAPRKLKLSWNAGAVCLAPLPVAI+HGFFQK NLDVELVNYSGSTDQLLEAIATG Sbjct: 61 APALTGAPRKLKLSWNAGAVCLAPLPVAIEHGFFQKHNLDVELVNYSGSTDQLLEAIATG 120 Query: 120 KSDAGLGMALRWLKPLEQGFDVKIAAGTHGGCMRVLTRTNSGVDKLADLKGKIVAVGDLA 179 KSDAGLGMALRWLKPLEQGFDVKIAAGTHGGCMRVLTRT+SGV +LADLKGK VAVGDLA Sbjct: 121 KSDAGLGMALRWLKPLEQGFDVKIAAGTHGGCMRVLTRTDSGVARLADLKGKTVAVGDLA 180 Query: 180 GPDKNFFSIQLAKLGIDPIKDVDWRAYPGNLLNVAVEKGEVQAFLSSDPLAYLWLKDAQY 239 GPDKNFFSIQLAKLGIDP+KDVDWRAYPGNLLNVAVEKGEVQAFLSSDPLAYLWLKD+QY Sbjct: 181 GPDKNFFSIQLAKLGIDPVKDVDWRAYPGNLLNVAVEKGEVQAFLSSDPLAYLWLKDSQY 240 Query: 240 KEVASNLDGEYRDKSCCIVGLRGSLVREEPQVARAITQALLDAAMFTSQNPDKAAKSFQP 299 KEVASNLDGEYRDKSCCIVG+RGSLVREEPQVARAITQALLDAAMFTSQNP AAKSFQP Sbjct: 241 KEVASNLDGEYRDKSCCIVGVRGSLVREEPQVARAITQALLDAAMFTSQNPTVAAKSFQP 300 Query: 300 YAPKAASLADLEAMARYHTHHHHPTGEVLKRELKGYADDLKTVQVFKQSTDTAKFAERIY 359 YAPKAA+LAD+E M RYHTHHHHP GEVLKRELK YADDLK+VQVFKQSTDTAKFAERIY Sbjct: 301 YAPKAATLADIEGMVRYHTHHHHPVGEVLKRELKAYADDLKSVQVFKQSTDTAKFAERIY 360 Query: 360 VDVFSV 365 VDVF+V Sbjct: 361 VDVFAV 366 >ref|YP_001239313.1| putative alkanesulfonate ABC transporter substrate binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ35407.1| putative alkanesulfonate ABC transporter, substrate binding protein [Bradyrhizobium sp. BTAi1] Length = 355 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 288/356 (80%), Positives = 318/356 (89%), Gaps = 1/356 (0%) Query: 10 VMDRRTLLRAGAAAALAAPIGAYSAQAFAPRAITPAIDFSEFPICKTASDAPVLTGAPRK 69 ++DRR LL+AGAAAA+AAP+G Y AQA + RA TP ID S+FPIC+TA+D P LTGAPRK Sbjct: 1 MLDRRRLLQAGAAAAIAAPLGGYGAQALSLRA-TPQIDLSQFPICRTATDGPALTGAPRK 59 Query: 70 LKLSWNAGAVCLAPLPVAIDHGFFQKQNLDVELVNYSGSTDQLLEAIATGKSDAGLGMAL 129 LKLSWNAGAVCL P+PVAID GFF+K NLDVEL+NYSGSTDQLLEAIATGKSDAGLGMAL Sbjct: 60 LKLSWNAGAVCLTPVPVAIDQGFFKKHNLDVELINYSGSTDQLLEAIATGKSDAGLGMAL 119 Query: 130 RWLKPLEQGFDVKIAAGTHGGCMRVLTRTNSGVDKLADLKGKIVAVGDLAGPDKNFFSIQ 189 RWLKPLEQGFDVKIAAGTHGGCMRVL R +SG+ KLADLKGK VAVGDL GPDKNFFSIQ Sbjct: 120 RWLKPLEQGFDVKIAAGTHGGCMRVLVRADSGITKLADLKGKAVAVGDLGGPDKNFFSIQ 179 Query: 190 LAKLGIDPIKDVDWRAYPGNLLNVAVEKGEVQAFLSSDPLAYLWLKDAQYKEVASNLDGE 249 LA+LGIDP+KDVDWR YPG ++NVA +KGE QAFL+SDPLAYLWLKD YKEVASNLDGE Sbjct: 180 LARLGIDPVKDVDWRVYPGAVVNVAADKGETQAFLASDPLAYLWLKDPAYKEVASNLDGE 239 Query: 250 YRDKSCCIVGLRGSLVREEPQVARAITQALLDAAMFTSQNPDKAAKSFQPYAPKAASLAD 309 Y+++ CCI+GLRGSLVR+EP V RAITQALLDAAMFT+QNP +AAKSFQPYAPK A+LAD Sbjct: 240 YQNRVCCILGLRGSLVRDEPAVGRAITQALLDAAMFTAQNPSEAAKSFQPYAPKQATLAD 299 Query: 310 LEAMARYHTHHHHPTGEVLKRELKGYADDLKTVQVFKQSTDTAKFAERIYVDVFSV 365 LE MARYHTHHHHP G LK+ELK YADDLK V VFK STDT KFAERIYVD+FSV Sbjct: 300 LEGMARYHTHHHHPHGPALKQELKAYADDLKVVSVFKPSTDTNKFAERIYVDIFSV 355 >ref|YP_001206334.1| putative alkanesulfonate ABC transporter substrate binding protein [Bradyrhizobium sp. ORS 278] emb|CAL78111.1| putative alkanesulfonate ABC transporter, substrate binding protein [Bradyrhizobium sp. ORS 278] Length = 363 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 281/365 (76%), Positives = 312/365 (85%), Gaps = 2/365 (0%) Query: 1 MMSRDNKKTVMDRRTLLRAGAAAALAAPIGAYSAQAFAPRAITPAIDFSEFPICKTASDA 60 M + DN V RR L A AAL AP G +AQA + RA P ID +FPIC+TA++A Sbjct: 1 MDTTDNTSAVTRRRLLQAG-AGAALLAPFGGLAAQALSLRA-APEIDVQQFPICRTAAEA 58 Query: 61 PVLTGAPRKLKLSWNAGAVCLAPLPVAIDHGFFQKQNLDVELVNYSGSTDQLLEAIATGK 120 PVLTG PRKLKLSWNAGAVCL P+PVAID GFF+K NLDVEL+NYSGSTDQLLEAIATGK Sbjct: 59 PVLTGEPRKLKLSWNAGAVCLTPVPVAIDQGFFKKYNLDVELINYSGSTDQLLEAIATGK 118 Query: 121 SDAGLGMALRWLKPLEQGFDVKIAAGTHGGCMRVLTRTNSGVDKLADLKGKIVAVGDLAG 180 SDAGLGMALRWLKPLEQGFDVKIAAGTHGGCMRVL R +SG+ KLADLKGK VAVGDL G Sbjct: 119 SDAGLGMALRWLKPLEQGFDVKIAAGTHGGCMRVLARADSGITKLADLKGKAVAVGDLGG 178 Query: 181 PDKNFFSIQLAKLGIDPIKDVDWRAYPGNLLNVAVEKGEVQAFLSSDPLAYLWLKDAQYK 240 PDKNFFSIQLA+LGIDP+KDVDWR YPG ++NVA +KGE QAFL+SDPLAYLWLKD YK Sbjct: 179 PDKNFFSIQLARLGIDPVKDVDWRVYPGAVVNVAADKGETQAFLASDPLAYLWLKDPAYK 238 Query: 241 EVASNLDGEYRDKSCCIVGLRGSLVREEPQVARAITQALLDAAMFTSQNPDKAAKSFQPY 300 EVASNLDGEY+++ CCI+GLRGSLVR+EPQV RA+TQALLDAAMFT+QNP +AAKSFQPY Sbjct: 239 EVASNLDGEYQNRVCCILGLRGSLVRDEPQVGRAVTQALLDAAMFTAQNPTEAAKSFQPY 298 Query: 301 APKAASLADLEAMARYHTHHHHPTGEVLKRELKGYADDLKTVQVFKQSTDTAKFAERIYV 360 APK A+LADLE M RYHTHHHHP G LK+EL+ YADDLK V VFK STDT KFAERIYV Sbjct: 299 APKQATLADLEGMVRYHTHHHHPHGAALKQELRAYADDLKVVSVFKPSTDTNKFAERIYV 358 Query: 361 DVFSV 365 D+F+V Sbjct: 359 DIFAV 363 >ref|YP_001991671.1| ABC transporter substrate-binding protein [Rhodopseudomonas palustris TIE-1] gb|ACF01196.1| ABC transporter substrate-binding protein [Rhodopseudomonas palustris TIE-1] Length = 362 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/364 (66%), Positives = 289/364 (79%), Gaps = 2/364 (0%) Query: 2 MSRDNKKTVMDRRTLLRAGAAAALAAPIGAYSAQAFAPRAITPAIDFSEFPICKTASDAP 61 MS K + RR++L A+ +AAP GA+ QAF R I D S+ PIC+T+ +A Sbjct: 1 MSNQEKGRWISRRSVLLGAASGVIAAPAGAFGLQAFPARPI--GYDLSDAPICRTSGEAT 58 Query: 62 VLTGAPRKLKLSWNAGAVCLAPLPVAIDHGFFQKQNLDVELVNYSGSTDQLLEAIATGKS 121 LTGAPRK+KLSWNA +VC +PVA+D+ FF+KQNLDVELVN+SGSTDQLLEAIATGKS Sbjct: 59 PLTGAPRKVKLSWNATSVCSVQVPVAVDYDFFKKQNLDVELVNFSGSTDQLLEAIATGKS 118 Query: 122 DAGLGMALRWLKPLEQGFDVKIAAGTHGGCMRVLTRTNSGVDKLADLKGKIVAVGDLAGP 181 DAG+GMALRWLKPLEQGFDVKI AGTHGGC+R + T S + K+ DLKGK+VA+ D AGP Sbjct: 119 DAGVGMALRWLKPLEQGFDVKIVAGTHGGCLRAIAPTKSEISKVTDLKGKVVAIDDQAGP 178 Query: 182 DKNFFSIQLAKLGIDPIKDVDWRAYPGNLLNVAVEKGEVQAFLSSDPLAYLWLKDAQYKE 241 KNFFSIQLAK GIDP KD++W+ YP NL+ +AVEKGE QA L+SDPLA+ +LKD ++KE Sbjct: 179 GKNFFSIQLAKAGIDPTKDLEWKQYPANLVRLAVEKGEAQAALASDPLAHAFLKDGEFKE 238 Query: 242 VASNLDGEYRDKSCCIVGLRGSLVREEPQVARAITQALLDAAMFTSQNPDKAAKSFQPYA 301 + SNLDG YR+ SCCIVG+RGSL+REEPQVARA+TQALLDAA F+S+NP+KAAKSF PYA Sbjct: 239 IGSNLDGIYRNVSCCIVGVRGSLIREEPQVARALTQALLDAAEFSSKNPEKAAKSFLPYA 298 Query: 302 PKAASLADLEAMARYHTHHHHPTGEVLKRELKGYADDLKTVQVFKQSTDTAKFAERIYVD 361 PK + D++A+ +YHTH HHP G LK ELK YADDLK V V K STDT KFAE+IY D Sbjct: 299 PKIVTEEDIQALIKYHTHDHHPIGAQLKNELKLYADDLKAVSVIKPSTDTTKFAEKIYAD 358 Query: 362 VFSV 365 VF V Sbjct: 359 VFRV 362 >ref|YP_004108776.1| ABC transporter substrate-binding protein [Rhodopseudomonas palustris DX-1] gb|ADU44043.1| ABC transporter substrate-binding protein [Rhodopseudomonas palustris DX-1] Length = 361 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 244/364 (67%), Positives = 290/364 (79%), Gaps = 3/364 (0%) Query: 2 MSRDNKKTVMDRRTLLRAGAAAALAAPIGAYSAQAFAPRAITPAIDFSEFPICKTASDAP 61 MS K + RR++L AA +AAP+GA+ QAF + D S+FPIC+T+ DA Sbjct: 1 MSNQKKGRPISRRSVLLGAAAGVVAAPVGAFGIQAFP--TVPVGYDLSDFPICRTSGDA- 57 Query: 62 VLTGAPRKLKLSWNAGAVCLAPLPVAIDHGFFQKQNLDVELVNYSGSTDQLLEAIATGKS 121 VLTGAPRKLKLSWNA +VC +PVA+D+ FF+KQNLDVELVN+SGSTDQLLEAIATGKS Sbjct: 58 VLTGAPRKLKLSWNANSVCSVQVPVAVDYEFFRKQNLDVELVNFSGSTDQLLEAIATGKS 117 Query: 122 DAGLGMALRWLKPLEQGFDVKIAAGTHGGCMRVLTRTNSGVDKLADLKGKIVAVGDLAGP 181 D G+GMALRWLKPLEQGFDVKI AGTHGGC+R + T S + K+ DLKGK+VA+ D AGP Sbjct: 118 DVGVGMALRWLKPLEQGFDVKIVAGTHGGCLRAIAPTTSEISKVTDLKGKVVAIDDQAGP 177 Query: 182 DKNFFSIQLAKLGIDPIKDVDWRAYPGNLLNVAVEKGEVQAFLSSDPLAYLWLKDAQYKE 241 KNFFSIQLAK GIDP +VDW+ YPGNL+ +AVEKGE QA L+SDPLA+ +LKD ++KE Sbjct: 178 GKNFFSIQLAKAGIDPATEVDWKQYPGNLVRLAVEKGEAQAALASDPLAHAFLKDGEFKE 237 Query: 242 VASNLDGEYRDKSCCIVGLRGSLVREEPQVARAITQALLDAAMFTSQNPDKAAKSFQPYA 301 + SNLDG YR+ SCCIVG+RGSL+REEPQVARA+TQALLDAA F+S+NP+KAAKSF PYA Sbjct: 238 IGSNLDGIYRNVSCCIVGVRGSLIREEPQVARALTQALLDAAEFSSKNPEKAAKSFLPYA 297 Query: 302 PKAASLADLEAMARYHTHHHHPTGEVLKRELKGYADDLKTVQVFKQSTDTAKFAERIYVD 361 PK + D++A+ +YHTH HHP G LK ELK YADDLK V V K STDT KFAE+IY D Sbjct: 298 PKIVTEEDIQALIKYHTHDHHPIGAQLKNELKLYADDLKAVSVIKPSTDTTKFAEKIYAD 357 Query: 362 VFSV 365 VF V Sbjct: 358 VFRV 361