BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0115.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205940.1| putative ABC transporter permease [Bradyrhiz... 566 e-159 ref|YP_001240280.1| putative ABC transporter permease [Bradyrhiz... 566 e-159 ref|YP_568290.1| binding-protein-dependent transport systems inn... 556 e-156 ref|YP_484661.1| binding-protein dependent transport system inne... 531 e-149 ref|YP_001991900.1| ABC transporter inner membrane protein [Rhod... 528 e-148 >ref|YP_001205940.1| putative ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL77715.1| putative ABC transporter, permease protein [Bradyrhizobium sp. ORS 278] Length = 325 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 287/324 (88%), Positives = 306/324 (94%), Gaps = 5/324 (1%) Query: 1 MRILSLAGRRLAASIPTLFLILIGVFLLLQLAPGDTVDALMAQMGGGDAATAEALRKFYG 60 MRILSLAGRRLAASIPTLFLILIGVFLLLQLAPGDTVDA+MAQMGGGDAATA LR+FYG Sbjct: 1 MRILSLAGRRLAASIPTLFLILIGVFLLLQLAPGDTVDAMMAQMGGGDAATARELRRFYG 60 Query: 61 LNLSVPAQLGNYLWHLVRLDLGFSSIYGKPVATVILERLPPTILLMTASLSFAFFFGLVF 120 L+LSVP QL NYLW LVRLDLGFS+IYGKPVATVILERLPPT+LLMT++LSFAFFFGLVF Sbjct: 61 LDLSVPMQLANYLWRLVRLDLGFSAIYGKPVATVILERLPPTLLLMTSALSFAFFFGLVF 120 Query: 121 GVIAARGVNRWPDTMISTLGLIIYATPSFWFGLMAIVVFSVYLQWLPPGGFEDIGNVQTG 180 GVIAARGVNRWPDT+IST+GLI YATPSFWFGLMAIVVFS+YLQWLP GGFED+G V G Sbjct: 121 GVIAARGVNRWPDTLISTVGLIFYATPSFWFGLMAIVVFSIYLQWLPAGGFEDVGTVGRG 180 Query: 181 IWRVLDIAAHLVLPTLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDETHVITRH 240 +WR+LDIA+HLVLP+LTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDET +ITRH Sbjct: 181 VWRMLDIASHLVLPSLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDETRIITRH 240 Query: 241 VLRNALLPMVTLIGLQAGTX-----VVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA 295 VLRNALLPMVTLIGLQAGT VVE+VFSLPGLGRLAYESV+QRDLNTLLGIVFVSA Sbjct: 241 VLRNALLPMVTLIGLQAGTMLGGSVVVETVFSLPGLGRLAYESVIQRDLNTLLGIVFVSA 300 Query: 296 LLVISVNFVVDLLYARLDPRIAAE 319 LLVI+VNFV DLLYARLDPRIAAE Sbjct: 301 LLVIAVNFVTDLLYARLDPRIAAE 324 >ref|YP_001240280.1| putative ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ36374.1| putative ABC transporter, permease protein [Bradyrhizobium sp. BTAi1] Length = 325 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 287/324 (88%), Positives = 306/324 (94%), Gaps = 5/324 (1%) Query: 1 MRILSLAGRRLAASIPTLFLILIGVFLLLQLAPGDTVDALMAQMGGGDAATAEALRKFYG 60 MRILSLAGRRLAASIPTL LIL+GVFLLLQLAPGDTVDA+MAQMGGGDAATA LR+FYG Sbjct: 1 MRILSLAGRRLAASIPTLVLILVGVFLLLQLAPGDTVDAMMAQMGGGDAATARELRRFYG 60 Query: 61 LNLSVPAQLGNYLWHLVRLDLGFSSIYGKPVATVILERLPPTILLMTASLSFAFFFGLVF 120 L+LS+P QL NYLW LVRLDLGFS+IYGKPVATVILERLPPT+LLMT++LSFAFFFGLVF Sbjct: 61 LDLSIPMQLANYLWRLVRLDLGFSAIYGKPVATVILERLPPTLLLMTSALSFAFFFGLVF 120 Query: 121 GVIAARGVNRWPDTMISTLGLIIYATPSFWFGLMAIVVFSVYLQWLPPGGFEDIGNVQTG 180 GVIAARGVNRWPDT+IST+GLI YATPSFWFGLMAIVVFS+YLQWLP GGFEDIG ++TG Sbjct: 121 GVIAARGVNRWPDTLISTVGLIFYATPSFWFGLMAIVVFSIYLQWLPAGGFEDIGAIRTG 180 Query: 181 IWRVLDIAAHLVLPTLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDETHVITRH 240 IWRVLDIA+HL+LP+LTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDET +ITRH Sbjct: 181 IWRVLDIASHLILPSLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDETRIITRH 240 Query: 241 VLRNALLPMVTLIGLQAGTX-----VVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA 295 VLRNALLPMVTLIGLQAGT VVE+VFSLPGLGRLAYESVVQRDLNTLLGIVFVSA Sbjct: 241 VLRNALLPMVTLIGLQAGTMLGGSVVVETVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA 300 Query: 296 LLVISVNFVVDLLYARLDPRIAAE 319 LLVI VNFV DLLYARLDPRIAAE Sbjct: 301 LLVILVNFVTDLLYARLDPRIAAE 324 >ref|YP_568290.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] gb|ABE38389.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] Length = 325 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 285/323 (88%), Positives = 300/323 (92%), Gaps = 5/323 (1%) Query: 1 MRILSLAGRRLAASIPTLFLILIGVFLLLQLAPGDTVDALMAQMGGGDAATAEALRKFYG 60 MRILSLAGRRLAASIPTLFLILIG+F+LLQ APGDTVDA+MAQMGGGDAATA LR+FYG Sbjct: 1 MRILSLAGRRLAASIPTLFLILIGIFVLLQFAPGDTVDAMMAQMGGGDAATARELRQFYG 60 Query: 61 LNLSVPAQLGNYLWHLVRLDLGFSSIYGKPVATVILERLPPTILLMTASLSFAFFFGLVF 120 L+LSVP QLGNYLW LVR DLGFSSIYGKPVATVILERLPPT+LLMTASLSFAFF GLV Sbjct: 61 LDLSVPMQLGNYLWRLVRFDLGFSSIYGKPVATVILERLPPTLLLMTASLSFAFFAGLVL 120 Query: 121 GVIAARGVNRWPDTMISTLGLIIYATPSFWFGLMAIVVFSVYLQWLPPGGFEDIGNVQTG 180 GVIAARGVN+WPDT+ISTLGLI YATPSFWFGLMAIVVFSVYLQWLP GGFEDIG TG Sbjct: 121 GVIAARGVNKWPDTLISTLGLIFYATPSFWFGLMAIVVFSVYLQWLPAGGFEDIGAASTG 180 Query: 181 IWRVLDIAAHLVLPTLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDETHVITRH 240 + R LDIA+HLVLPTLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDET ++ RH Sbjct: 181 LARTLDIASHLVLPTLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDETRIVVRH 240 Query: 241 VLRNALLPMVTLIGLQAGTX-----VVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA 295 VLRNALLPMVTLIGLQAGT VVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA Sbjct: 241 VLRNALLPMVTLIGLQAGTMLGGSVVVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA 300 Query: 296 LLVISVNFVVDLLYARLDPRIAA 318 LLVI+VNF+VDLLYARLDPRI+A Sbjct: 301 LLVIAVNFLVDLLYARLDPRISA 323 >ref|YP_484661.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD05750.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 325 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 283/323 (87%), Positives = 298/323 (92%), Gaps = 5/323 (1%) Query: 1 MRILSLAGRRLAASIPTLFLILIGVFLLLQLAPGDTVDALMAQMGGGDAATAEALRKFYG 60 MRIL+LAGRRLAASIPTL LILIG+FLLLQ APGDTVDA+MAQMGGGDAATA LR+FYG Sbjct: 1 MRILNLAGRRLAASIPTLLLILIGIFLLLQFAPGDTVDAMMAQMGGGDAATARELRQFYG 60 Query: 61 LNLSVPAQLGNYLWHLVRLDLGFSSIYGKPVATVILERLPPTILLMTASLSFAFFFGLVF 120 L+LS+P QLGNYLW LVR DLGFSSIYGKPVATVILERLPPT+LLMTASLSFAFF GLV Sbjct: 61 LDLSIPMQLGNYLWRLVRFDLGFSSIYGKPVATVILERLPPTLLLMTASLSFAFFAGLVL 120 Query: 121 GVIAARGVNRWPDTMISTLGLIIYATPSFWFGLMAIVVFSVYLQWLPPGGFEDIGNVQTG 180 GVIAARGVN+WPDT+ISTLGLI YATPSFWFGLMAIVVFSVYLQWLP GGFEDIG TG Sbjct: 121 GVIAARGVNKWPDTLISTLGLIFYATPSFWFGLMAIVVFSVYLQWLPAGGFEDIGAASTG 180 Query: 181 IWRVLDIAAHLVLPTLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDETHVITRH 240 + R LDIA+HLVLPTLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDET ++ RH Sbjct: 181 LARTLDIASHLVLPTLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDETRIVVRH 240 Query: 241 VLRNALLPMVTLIGLQAGTX-----VVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA 295 VLRNALLPMVTLIGLQAGT VVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA Sbjct: 241 VLRNALLPMVTLIGLQAGTMLGGSVVVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA 300 Query: 296 LLVISVNFVVDLLYARLDPRIAA 318 LLVI+VNF+VDLLYARLDPRI A Sbjct: 301 LLVIAVNFLVDLLYARLDPRITA 323 >ref|YP_001991900.1| ABC transporter inner membrane protein [Rhodopseudomonas palustris TIE-1] gb|ACF01425.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris TIE-1] Length = 325 Score = 528 bits (1360), Expect = e-148, Method: Compositional matrix adjust. Identities = 282/323 (87%), Positives = 299/323 (92%), Gaps = 5/323 (1%) Query: 1 MRILSLAGRRLAASIPTLFLILIGVFLLLQLAPGDTVDALMAQMGGGDAATAEALRKFYG 60 MRIL+LAGRRLAASIPTLFLILIG+FLLLQ APGDTVDA+MAQMGGGDAATA LR+FYG Sbjct: 1 MRILNLAGRRLAASIPTLFLILIGIFLLLQFAPGDTVDAMMAQMGGGDAATARELRQFYG 60 Query: 61 LNLSVPAQLGNYLWHLVRLDLGFSSIYGKPVATVILERLPPTILLMTASLSFAFFFGLVF 120 L+LS+P QLG+YLW LVR DLGFSSIYGKPVA+VILERLPPT+LLMTASLSFAFF GLV Sbjct: 61 LDLSIPMQLGHYLWRLVRFDLGFSSIYGKPVASVILERLPPTLLLMTASLSFAFFAGLVL 120 Query: 121 GVIAARGVNRWPDTMISTLGLIIYATPSFWFGLMAIVVFSVYLQWLPPGGFEDIGNVQTG 180 GV+AARGVN+WPDT+ISTLGLI YATPSFWFGLMAIVVFSVYLQWLP GGFEDIG TG Sbjct: 121 GVVAARGVNKWPDTLISTLGLIFYATPSFWFGLMAIVVFSVYLQWLPAGGFEDIGQAATG 180 Query: 181 IWRVLDIAAHLVLPTLTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDETHVITRH 240 + R LDIAAHLVLP LTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDET V+ RH Sbjct: 181 LARTLDIAAHLVLPALTLGLIFLAIYLRIMRASMLEVLNLDFVRTARAKGLDETRVVVRH 240 Query: 241 VLRNALLPMVTLIGLQAGTX-----VVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA 295 VLRNALLPMVTLIGLQAGT VVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA Sbjct: 241 VLRNALLPMVTLIGLQAGTMLGGSVVVESVFSLPGLGRLAYESVVQRDLNTLLGIVFVSA 300 Query: 296 LLVISVNFVVDLLYARLDPRIAA 318 LLVI+VNF+VDLLYARLDPRI+A Sbjct: 301 LLVIAVNFLVDLLYARLDPRISA 323