BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0107.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769371.1| ABC transporter substrate-binding protein [Brad... 532 e-149 ref|YP_001207890.1| ABC transporter substrate-binding protein [B... 460 e-127 ref|YP_001237871.1| ABC transporter substrate-binding protein [B... 449 e-124 ref|YP_001368921.1| extracellular solute-binding protein [Ochrob... 356 3e-96 ref|ZP_04679451.1| extracellular solute-binding protein [Ochroba... 355 6e-96 >ref|NP_769371.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47996.1| bll2731 [Bradyrhizobium japonicum USDA 110] Length = 460 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 282/419 (67%), Positives = 306/419 (73%), Gaps = 88/419 (21%) Query: 1 LTGFPARADVNWKKYSGTTLEVILAKRPRGDNLQKYIKEFTELTGIKVESEQIPEQQQRQ 60 LTG PARA+VNWKKY+GT LEVILAK PRGDNLQK IKEFTELTGI+VE+EQIPEQQQRQ Sbjct: 42 LTGLPARAEVNWKKYAGTKLEVILAKGPRGDNLQKNIKEFTELTGIQVEAEQIPEQQQRQ 101 Query: 61 KCVIELSSGKPSFDVVHLSYHVQKRQFEKAGWLADMSGYLKDPSMTPLDLVESDFSAAGL 120 K VIE +SG+PSFDVVHLSYHVQKRQFEKAGWLADM+ ++KDPS+T DLVESDFSAAGL Sbjct: 102 KVVIEFTSGRPSFDVVHLSYHVQKRQFEKAGWLADMTPFMKDPSLTAPDLVESDFSAAGL 161 Query: 121 QYARNDKGQMLSLPWSVDYFILYYNKELFQKKGVEVPKTLEEMAIAAEKL---------- 170 QYA+NDKGQMLSLPWSVDYFILYYNKELFQKKGV VPKTL+EM AAEKL Sbjct: 162 QYAKNDKGQMLSLPWSVDYFILYYNKELFQKKGVAVPKTLDEMVAAAEKLTDPKEGTYGF 221 Query: 171 --------------------------------TDPKEGIX---------------GVAGF 183 TD E I GVAGF Sbjct: 222 VGRGLRNANMALWTNFFLNYGGEFLDDKRNILTDGPEAIAATKLYQTLLTKSAPPGVAGF 281 Query: 184 NWMESMASFTQGRSAMWIDADGWAPPLEDPAASR------------------------GV 219 NWMESMASFTQGRSAMWID GWAPPLEDPAASR G+ Sbjct: 282 NWMESMASFTQGRSAMWIDGVGWAPPLEDPAASRVVGKVGYTVVPAGPKGHYSSTYGDGI 341 Query: 220 GIAAASKNKEAAYLLCQWVVSRGQG------GGGVPFRNSIVDDAEVAKGVKTK-EWLQS 272 GIAAASKNKEAAYLLCQWVVS+ QG GGGVPFR+SI++D E+ KGVK EWLQS Sbjct: 342 GIAAASKNKEAAYLLCQWVVSKQQGARLLQAGGGVPFRSSILNDPEIQKGVKMPPEWLQS 401 Query: 273 VVDSAKISKLGLPVIIPVAEFRDIVGAALTATLSGADPATELKKAHEQFRPILERSEKA 331 V++S KISKLGLPV++PVAEFRDIVGAALTATLSGADPA ELKKA++QFRPILERSEKA Sbjct: 402 VIESGKISKLGLPVVVPVAEFRDIVGAALTATLSGADPAAELKKANDQFRPILERSEKA 460 >ref|YP_001207890.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL79675.1| Putative ABC transporter (substrate binding protein) [Bradyrhizobium sp. ORS 278] Length = 439 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 256/415 (61%), Positives = 281/415 (67%), Gaps = 88/415 (21%) Query: 5 PARADVNWKKYSGTTLEVILAKRPRGDNLQKYIKEFTELTGIKVESEQIPEQQQRQKCVI 64 PAR++ WKKY+GT LEVILAK PRGDNLQK IKEFT LTGI+VESEQIPEQQQRQK VI Sbjct: 25 PARSEPQWKKYAGTKLEVILAKGPRGDNLQKNIKEFTALTGIEVESEQIPEQQQRQKVVI 84 Query: 65 ELSSGKPSFDVVHLSYHVQKRQFEKAGWLADMSGYLKDPSMTPLDLVESDFSAAGLQYAR 124 ELSSGKPSFDVVHLSYHVQKRQFEKAGWLAD++ +KDP++T DLV SDFSAAGL YA Sbjct: 85 ELSSGKPSFDVVHLSYHVQKRQFEKAGWLADITDMMKDPNLTAPDLVPSDFSAAGLTYAS 144 Query: 125 NDKGQMLSLPWSVDYFILYYNKELFQKKGVEVPKTLEEMAIAAEKLTDPKEGIXGVAGFN 184 NDKG+M SLPWSVDYFILYYNKELF KKGVEVPKTL+EM AA+KLTD K+G G G Sbjct: 145 NDKGRMFSLPWSVDYFILYYNKELFAKKGVEVPKTLDEMVTAAQKLTDAKDGTFGFVGRG 204 Query: 185 W----MESMASFTQGRSAMWIDADG----------------------WAPP--------- 209 M +F ++DA G APP Sbjct: 205 LRNANMTLWTNFFLNYGGEFLDAKGNILTDGPEAIEATKLYQKLLTTCAPPGVAGFNWME 264 Query: 210 ----------------------LEDPAASR------------------------GVGIAA 223 LEDP ASR G+GIAA Sbjct: 265 SMASFTQGRSAMWIDGVGWAPPLEDPNASRVVGKVGYTVVPAGPKGQYSATYGDGIGIAA 324 Query: 224 ASKNKEAAYLLCQWVVSRGQG------GGGVPFRNSIVDDAEVAKGVKT-KEWLQSVVDS 276 ASKNKEAA+LLCQW+VS+ QG GGGVPFRNS+++DAE+ GVK KEWLQS +DS Sbjct: 325 ASKNKEAAWLLCQWLVSKPQGARLVQAGGGVPFRNSVLNDAEIQGGVKMPKEWLQSAIDS 384 Query: 277 AKISKLGLPVIIPVAEFRDIVGAALTATLSGADPATELKKAHEQFRPILERSEKA 331 KISKLGLPVIIPVAEFRDIVGAALTATLSGADPATELKKAHEQFRPILERSEKA Sbjct: 385 GKISKLGLPVIIPVAEFRDIVGAALTATLSGADPATELKKAHEQFRPILERSEKA 439 >ref|YP_001237871.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ33965.1| carbohydrate ABC transporter substrate-binding protein, CUT1 family [Bradyrhizobium sp. BTAi1] Length = 439 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 250/415 (60%), Positives = 276/415 (66%), Gaps = 88/415 (21%) Query: 5 PARADVNWKKYSGTTLEVILAKRPRGDNLQKYIKEFTELTGIKVESEQIPEQQQRQKCVI 64 PA ++ WKKY+GT LEVILAK PRGDNLQK IKEFT LTGI+VESEQIPEQQQRQK VI Sbjct: 25 PAWSEPQWKKYAGTKLEVILAKGPRGDNLQKNIKEFTALTGIEVESEQIPEQQQRQKVVI 84 Query: 65 ELSSGKPSFDVVHLSYHVQKRQFEKAGWLADMSGYLKDPSMTPLDLVESDFSAAGLQYAR 124 ELSSGKPSFDVVHLSYHVQKRQFEKAGWL D++ ++KDP++T DLV DFSAAGL YA Sbjct: 85 ELSSGKPSFDVVHLSYHVQKRQFEKAGWLTDVTDFMKDPNLTAPDLVPGDFSAAGLTYAS 144 Query: 125 NDKGQMLSLPWSVDYFILYYNKELFQKKGVEVPKTLEEMAIAAEKLTDPKEGIXGVAGFN 184 NDK +M SLPWSVDYFILYYNKEL KKGVEVPKTL+EM +AA+KLTDPK+G G G Sbjct: 145 NDKARMFSLPWSVDYFILYYNKELLAKKGVEVPKTLDEMVVAAQKLTDPKDGTFGFVGRG 204 Query: 185 W----MESMASFTQGRSAMWIDADG----------------------WAPP--------- 209 M +F ++DA G APP Sbjct: 205 LRNANMTLWTNFFLNYGGEFLDAKGNIQTDGPEAIEATKLYQKLLTTCAPPGVAGFNWME 264 Query: 210 ----------------------LEDPAASR------------------------GVGIAA 223 LEDP ASR GVGI A Sbjct: 265 SMASFTQGRSAMWIDGVGWAPPLEDPNASRVVGKVGYTVVPAGPKGQYSATYGDGVGIPA 324 Query: 224 ASKNKEAAYLLCQWVVSRGQG------GGGVPFRNSIVDDAEVAKGVKT-KEWLQSVVDS 276 A KNKEAA+LLCQW+VS+ QG GGGVPFRNS++ DAE+ GVK KEWLQS +DS Sbjct: 325 ACKNKEAAWLLCQWMVSKAQGARLVQAGGGVPFRNSVLGDAEIQSGVKMPKEWLQSAIDS 384 Query: 277 AKISKLGLPVIIPVAEFRDIVGAALTATLSGADPATELKKAHEQFRPILERSEKA 331 KISKLGLPVIIPVAEFRD+VGAALTATLSGADPATELKKAHEQFRPILERSEKA Sbjct: 385 GKISKLGLPVIIPVAEFRDLVGAALTATLSGADPATELKKAHEQFRPILERSEKA 439 >ref|YP_001368921.1| extracellular solute-binding protein [Ochrobactrum anthropi ATCC 49188] gb|ABS13092.1| extracellular solute-binding protein family 1 [Ochrobactrum anthropi ATCC 49188] Length = 444 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 195/412 (47%), Positives = 244/412 (59%), Gaps = 88/412 (21%) Query: 6 ARADVNWKKYSGTTLEVILAKRPRGDNLQKYIKEFTELTGIKVESEQIPEQQQRQKCVIE 65 A++ V+WKKY+GTTLEV L K PRG+ LQKY KEF ELTGIKV SEQ+PEQQQRQK VIE Sbjct: 31 AQSTVDWKKYAGTTLEVNLIKSPRGEILQKYQKEFEELTGIKVNSEQMPEQQQRQKAVIE 90 Query: 66 LSSGKPSFDVVHLSYHVQKRQFEKAGWLADMSGYLKDPSMTPLDLVESDFSAAGLQYARN 125 L+SG+PSFDV+H+SYHVQKRQFEK GWLAD++ +LKDP++T L E DF++AGL +A++ Sbjct: 91 LTSGRPSFDVIHISYHVQKRQFEKGGWLADLNPFLKDPTLTDASLTEDDFASAGLTFAKD 150 Query: 126 DKGQMLSLPWSVDYFILYYNKELFQKKGVEVPKTLEEMAIAAEKLTDPKEGIXGVAGFNW 185 G+ +LP+SVDY+I+Y+NKELF KG+E PKT EE+ AAE LTDP G Sbjct: 151 ANGRFGALPFSVDYWIIYWNKELFAAKGIEFPKTFEELVAAAEALTDPSTRTYGFVARGM 210 Query: 186 MESMA----SFTQGRSAMWIDAD------------------------------------- 204 + A S G +DAD Sbjct: 211 KNANAPVYTSLLLGYGKQSVDADGNLQTDSAEGIEAAKLYQRLMTKSAPPGVAGFNWAEC 270 Query: 205 ----------------GWAPPLEDPAASR------------------------GVGIAAA 224 G+APPLEDP SR G+G+ A Sbjct: 271 QSNFLQGRVGMWLDGIGFAPPLEDPNKSRVVGKVGYGVMPAGPNAQAAPTTGDGIGVTEA 330 Query: 225 SKNKEAAYLLCQWVVSRGQG------GGGVPFRNSIVDDAEVAKGVKTKE-WLQSVVDSA 277 SKNKEAAYL CQW +S+ G G GVPFR S++DD V KGV W++++ SA Sbjct: 331 SKNKEAAYLYCQWAISKEMGARLLQSGSGVPFRKSVIDDEAVRKGVTMPAGWVEALSKSA 390 Query: 278 KISKLGLPVIIPVAEFRDIVGAALTATLSGADPATELKKAHEQFRPILERSE 329 IS+L LPVI+PV EFRDI+G LT L+GAD TE+K+A E+FRP+L RSE Sbjct: 391 PISQLCLPVIVPVTEFRDIIGVGLTNLLNGADAETEMKRATEEFRPVLARSE 442 >ref|ZP_04679451.1| extracellular solute-binding protein [Ochrobactrum intermedium LMG 3301] gb|EEQ94957.1| extracellular solute-binding protein [Ochrobactrum intermedium LMG 3301] Length = 456 Score = 355 bits (911), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 194/412 (47%), Positives = 244/412 (59%), Gaps = 88/412 (21%) Query: 6 ARADVNWKKYSGTTLEVILAKRPRGDNLQKYIKEFTELTGIKVESEQIPEQQQRQKCVIE 65 A++ V+WKK++GTTLEV L K PRG+ LQKY KEF ELTGIKV SEQ+PEQQQRQK VIE Sbjct: 43 AQSKVDWKKFAGTTLEVNLIKSPRGEILQKYQKEFEELTGIKVHSEQMPEQQQRQKAVIE 102 Query: 66 LSSGKPSFDVVHLSYHVQKRQFEKAGWLADMSGYLKDPSMTPLDLVESDFSAAGLQYARN 125 L+SG+PSFDV+H+SYHVQKRQFEK GWLAD++ +LKDP++T L E DF++AGL +A++ Sbjct: 103 LTSGRPSFDVIHISYHVQKRQFEKGGWLADLNPFLKDPTLTDASLTEDDFASAGLTFAKD 162 Query: 126 DKGQMLSLPWSVDYFILYYNKELFQKKGVEVPKTLEEMAIAAEKLTDPKEGIXGVAGFNW 185 G+ +LP+SVDY+I+Y+NKELF KG+E PKT EE+ AAE LTDP G Sbjct: 163 ANGRFGALPFSVDYWIIYWNKELFAAKGIEFPKTFEELVAAAEALTDPSTNTYGFVARGM 222 Query: 186 MESMA----SFTQGRSAMWIDAD------------------------------------- 204 + A S G +DAD Sbjct: 223 KNANAPVYTSLLLGYGKQSVDADGNLQTDSAEGIEAAKLYQRLMTKSAPPGVAGFNWAEC 282 Query: 205 ----------------GWAPPLEDPAASR------------------------GVGIAAA 224 G+APPLEDP SR G+G+ A Sbjct: 283 QSNFLQGRVGMWLDGIGFAPPLEDPNKSRVVGKVGYGVMPAGPNAQAAPTTGDGIGVTEA 342 Query: 225 SKNKEAAYLLCQWVVSRGQG------GGGVPFRNSIVDDAEVAKGVKTKE-WLQSVVDSA 277 SKNKEAAYL CQW +S+ G G GVPFR S++DD V KGV E W++++ SA Sbjct: 343 SKNKEAAYLYCQWAISKEMGARLLQSGSGVPFRKSVIDDEAVRKGVTMPEGWVEALSKSA 402 Query: 278 KISKLGLPVIIPVAEFRDIVGAALTATLSGADPATELKKAHEQFRPILERSE 329 IS+L LPVI+PV EFRDI+G LT L+GAD E+K+A E+FRP+L RSE Sbjct: 403 PISQLCLPVIVPVTEFRDIIGVGLTNLLNGADAEAEMKRATEEFRPVLARSE 454