BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0096.p (414 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_318357.1| Signal transduction histidine kinase [Nitrobact... 434 e-119 ref|YP_577430.1| multi-sensor signal transduction histidine kina... 432 e-119 ref|ZP_01047132.1| Signal transduction histidine kinase [Nitroba... 432 e-119 ref|YP_485972.1| multi-sensor signal transduction histidine kina... 432 e-119 ref|YP_004108568.1| multi-sensor signal transduction histidine k... 429 e-118 >ref|YP_318357.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gb|ABA05005.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 893 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/391 (57%), Positives = 281/391 (71%), Gaps = 2/391 (0%) Query: 19 LQLIYDTAPIGLAYLSPDCRYLQINQRLTEICGISVEGHLGRTVHDCVP-ALASAVEGIV 77 LQL+ DT P + + + RY+ +N+ + I GI +GRT + + A + Sbjct: 498 LQLVIDTVPAVINVKNAEMRYVLMNRYMAGIFGIEPADAIGRTAGEVMSHDDAEKTDETD 557 Query: 78 RSIMETGEPVTDVEVYGQRPGHNDERCWITHWHPQREPNGSIVGVNVAAEEITDRKRSER 137 R ++E+G+ + E Q + R W+ + P R+ +G + + A +I DRKRSE+ Sbjct: 558 RRVLESGKELGFYEEEYQ-DSSGEPRQWLVNKLPIRDADGRVENIVTVALDIGDRKRSEQ 616 Query: 138 EIRAARDAAEKALHHLQETQASLIEAEKLAALGRLVAGVAHEINSPVGTSLTVASVLEQK 197 E+R A+DAAE AL +L+ TQ SLIEAEKLAALGRLVAGVAHE+N+PVG SLTVAS LE+K Sbjct: 617 EMRRAKDAAEAALSNLRATQDSLIEAEKLAALGRLVAGVAHEVNNPVGISLTVASSLERK 676 Query: 198 CADFAAEAARGKLKRSSLSDFIEVVESASSLLVGNLKRAADLVQSFKQVAVDRSYFDRSQ 257 A FAAE RG+L+RSSL+DFI A+S LV NL RAA+LVQSFKQVA DRSY D+ Sbjct: 677 IALFAAEVERGQLRRSSLNDFIAANRDAASQLVANLNRAAELVQSFKQVAADRSYSDKRT 736 Query: 258 FDLGAVTEQVLSNLRPALPKNNLALEVDCPPGLAMNGYPGPYGQVLTNLFVNSVAHAFPD 317 FDLG +TEQV+ +LRPAL K+++AL VDC P L MN YPGPYGQVLTNLF+NSVAHAFPD Sbjct: 737 FDLGELTEQVVMSLRPALRKHHVALTVDCEPDLTMNSYPGPYGQVLTNLFLNSVAHAFPD 796 Query: 318 GKGGIITIRLRASGADQVEILFADNGCGMDDDVLRQAFDPFFTTRRDIGRIGLGLHIVHN 377 GKGG + I +R G D VEILF+D+GCGM+ DV R+AFDPFFTTRRD G GLGLHIV+N Sbjct: 797 GKGGTVNITVRRVGGDNVEILFSDDGCGMNPDVRRKAFDPFFTTRRDQGGTGLGLHIVYN 856 Query: 378 IVTNRLGGELHLDSAPGMGTRMRITLPRVAP 408 IVT+RLGG + LDS G GTR+ I LPRVAP Sbjct: 857 IVTSRLGGRIELDSDSGQGTRIHIVLPRVAP 887 >ref|YP_577430.1| multi-sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gb|ABE62970.1| multi-sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 885 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/392 (57%), Positives = 278/392 (70%), Gaps = 4/392 (1%) Query: 19 LQLIYDTAPIGLAYLSPDCRYLQINQRLTEICGISVEGHLGRTVHDCVPALASA-VEGIV 77 LQL+ DT P + + D RY+ +N+ + I I +GRT D + +A + Sbjct: 490 LQLVIDTVPAMINVKNADLRYVLMNRYMAGIFAIEPADAIGRTTSDLMSRYGAAKTDEND 549 Query: 78 RSIMETGEPVTDVEV-YGQRPGHNDERCWITHWHPQREPNGSIVGVNVAAEEITDRKRSE 136 R ++++G+ + E Y G R W+ + P R +G + + A +I DRKR+E Sbjct: 550 RRVLQSGKELGFYEEEYEDALGTM--RQWLVNKLPIRGADGRVENIVTVALDIGDRKRNE 607 Query: 137 REIRAARDAAEKALHHLQETQASLIEAEKLAALGRLVAGVAHEINSPVGTSLTVASVLEQ 196 +E+R A+DAAE AL +L+ETQ SLIEAEKLAALGRLVAGVAHE+N+PVG SLTVAS LE+ Sbjct: 608 QEMRQAKDAAETALRNLRETQNSLIEAEKLAALGRLVAGVAHEVNNPVGISLTVASSLER 667 Query: 197 KCADFAAEAARGKLKRSSLSDFIEVVESASSLLVGNLKRAADLVQSFKQVAVDRSYFDRS 256 K A FA E ARG L+RSSL+DF+ A+S LV NL RAA+LVQSFKQVA DRSY D+ Sbjct: 668 KIALFAEEVARGGLRRSSLNDFVATNRDAASQLVANLNRAAELVQSFKQVAADRSYSDKR 727 Query: 257 QFDLGAVTEQVLSNLRPALPKNNLALEVDCPPGLAMNGYPGPYGQVLTNLFVNSVAHAFP 316 FDLG +TEQV+ +LRP L K+N+ L VDC P L+MN YPGPYGQVLTNLF+NS+AHAFP Sbjct: 728 TFDLGELTEQVVMSLRPGLRKHNVTLTVDCEPNLSMNSYPGPYGQVLTNLFLNSLAHAFP 787 Query: 317 DGKGGIITIRLRASGADQVEILFADNGCGMDDDVLRQAFDPFFTTRRDIGRIGLGLHIVH 376 DGKGG + I +R +G D VEILF+DNGCGM DV R+AFDPFFTTRRD G GLGLHIV+ Sbjct: 788 DGKGGAVDINVRGAGRDNVEILFSDNGCGMSIDVRRKAFDPFFTTRRDQGGTGLGLHIVY 847 Query: 377 NIVTNRLGGELHLDSAPGMGTRMRITLPRVAP 408 NIVTNRLGG L LDS G GTR+ I LPRV P Sbjct: 848 NIVTNRLGGRLDLDSISGEGTRVHIVLPRVGP 879 >ref|ZP_01047132.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gb|EAQ34873.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 893 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 224/391 (57%), Positives = 279/391 (71%), Gaps = 2/391 (0%) Query: 19 LQLIYDTAPIGLAYLSPDCRYLQINQRLTEICGISVEGHLGRTVHDCVPAL-ASAVEGIV 77 LQL+ DT P + + + RY+ +N+ + I GI +G T ++ + A+ + Sbjct: 498 LQLVIDTVPAVINVKNAELRYVLMNRYMAGIFGIEPADAIGLTANEVMSRHDAAKTDETD 557 Query: 78 RSIMETGEPVTDVEVYGQRPGHNDERCWITHWHPQREPNGSIVGVNVAAEEITDRKRSER 137 R ++E+G+ + E + + R W+ + P +G + + A +I DRKRSE+ Sbjct: 558 RRVLESGKELGFYE-EEYKDASGEMRQWLVNKLPILSADGHVENIVTVALDIGDRKRSEQ 616 Query: 138 EIRAARDAAEKALHHLQETQASLIEAEKLAALGRLVAGVAHEINSPVGTSLTVASVLEQK 197 E+R A+DAAE AL +L+ETQ SLIEAEKLAALGRLVAGVAHE+N+PVG SLTVAS LE+K Sbjct: 617 EMRRAKDAAEAALRNLRETQNSLIEAEKLAALGRLVAGVAHEVNNPVGISLTVASSLERK 676 Query: 198 CADFAAEAARGKLKRSSLSDFIEVVESASSLLVGNLKRAADLVQSFKQVAVDRSYFDRSQ 257 A FA E RG+L+RSSLSDFI +A+S LV NL RAA+L+QSFKQVA DR+Y D+ Sbjct: 677 IALFAEEVERGQLRRSSLSDFIAANRNAASQLVANLNRAAELIQSFKQVAADRNYSDKRT 736 Query: 258 FDLGAVTEQVLSNLRPALPKNNLALEVDCPPGLAMNGYPGPYGQVLTNLFVNSVAHAFPD 317 FDLG +TEQV+ +LRP L K+N+ L VDC P L M+ YPGPYGQVLTNLF+NSVAHAFPD Sbjct: 737 FDLGELTEQVVMSLRPGLRKHNVTLTVDCEPDLTMSSYPGPYGQVLTNLFLNSVAHAFPD 796 Query: 318 GKGGIITIRLRASGADQVEILFADNGCGMDDDVLRQAFDPFFTTRRDIGRIGLGLHIVHN 377 GKGG + I +R GAD VEILF+DNGCGM DV R+AFDPFFTTRRD G GLGLHIV N Sbjct: 797 GKGGAVDINVRGLGADNVEILFSDNGCGMSLDVRRKAFDPFFTTRRDQGGTGLGLHIVFN 856 Query: 378 IVTNRLGGELHLDSAPGMGTRMRITLPRVAP 408 IVTNRLGG L LDS G GTR+RI LPRVAP Sbjct: 857 IVTNRLGGRLELDSDTGQGTRIRIILPRVAP 887 >ref|YP_485972.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gb|ABD07061.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 900 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 222/396 (56%), Positives = 281/396 (70%), Gaps = 2/396 (0%) Query: 19 LQLIYDTAPIGLAYLSPDCRYLQINQRLTEICGISVEGHLGRTVHDCVPALAS-AVEGIV 77 LQ + DT P + + RYL +N+ + I GI +GRT D + S + Sbjct: 499 LQQVIDTVPAVINVKDTELRYLLMNRYMATIFGIDPNDAIGRTTADLMSRYGSHKTDAND 558 Query: 78 RSIMETGEPVTDVEVYGQRPGHNDERCWITHWHPQREPNGSIVGVNVAAEEITDRKRSER 137 + ++ TGE + E Q R W+ + P ++ G+I + A +I +RKR E Sbjct: 559 KKVLATGEGLGFYEEEYQ-DATGAMRQWLVNKMPLKDSQGNIERIVTVALDIGERKRGEL 617 Query: 138 EIRAARDAAEKALHHLQETQASLIEAEKLAALGRLVAGVAHEINSPVGTSLTVASVLEQK 197 E+R A+DAAE AL +L+ETQ SLIEAEKLAALGRLVAGVAHE+N+PVG SLTVAS LE+K Sbjct: 618 EMRKAKDAAEAALRNLRETQQSLIEAEKLAALGRLVAGVAHEVNNPVGISLTVASALERK 677 Query: 198 CADFAAEAARGKLKRSSLSDFIEVVESASSLLVGNLKRAADLVQSFKQVAVDRSYFDRSQ 257 + FAAE RG LKRS L++F+ A+S LV NL RAA+L+QSFKQVA DR+Y D+ Sbjct: 678 TSVFAAEVERGDLKRSRLNEFLATSRDAASQLVANLNRAAELIQSFKQVAADRNYSDQRP 737 Query: 258 FDLGAVTEQVLSNLRPALPKNNLALEVDCPPGLAMNGYPGPYGQVLTNLFVNSVAHAFPD 317 FDLG +TEQV+ +LRP L K+NL L+VDC PGL MN YPGPYGQVLTNLF+NSVAHAFP+ Sbjct: 738 FDLGDLTEQVVMSLRPGLRKHNLTLDVDCQPGLTMNSYPGPYGQVLTNLFLNSVAHAFPN 797 Query: 318 GKGGIITIRLRASGADQVEILFADNGCGMDDDVLRQAFDPFFTTRRDIGRIGLGLHIVHN 377 G+ G + I++RASG D VE+++AD+GCGM DV R+AFDPFFTTRRD G GLGLHIV++ Sbjct: 798 GRPGTVEIKVRASGKDNVEVIYADDGCGMSLDVRRRAFDPFFTTRRDQGGTGLGLHIVYS 857 Query: 378 IVTNRLGGELHLDSAPGMGTRMRITLPRVAPQRVTD 413 IVTNRLGG L LDSAPG GTR+++ LPRVAP+ V D Sbjct: 858 IVTNRLGGRLDLDSAPGNGTRIQMILPRVAPRDVVD 893 >ref|YP_004108568.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gb|ADU43835.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 900 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 218/392 (55%), Positives = 278/392 (70%), Gaps = 2/392 (0%) Query: 19 LQLIYDTAPIGLAYLSPDCRYLQINQRLTEICGISVEGHLGRTVHDCVPALAS-AVEGIV 77 LQ + DT P + + RY+ +N+ + + GI + +GRT + + S + Sbjct: 499 LQQVIDTVPAVINVKDTELRYVLMNRYMAGVFGIDPQDAIGRTTAELMSRFGSHKTDAND 558 Query: 78 RSIMETGEPVTDVEVYGQRPGHNDERCWITHWHPQREPNGSIVGVNVAAEEITDRKRSER 137 + ++ETGE + E R R W+ + P ++ +G I + A +I +RKR E Sbjct: 559 KRVLETGEGLGFYE-EEYRDATGATRQWLVNKMPLKDADGRIERIVTVALDIGERKRGEL 617 Query: 138 EIRAARDAAEKALHHLQETQASLIEAEKLAALGRLVAGVAHEINSPVGTSLTVASVLEQK 197 E+R A+DAAE AL +L+ETQ SLIEAEKLAALGRLVAGVAHE+N+PVG SLTVAS LE+K Sbjct: 618 EMRQAKDAAEAALRNLRETQQSLIEAEKLAALGRLVAGVAHEVNNPVGISLTVASALERK 677 Query: 198 CADFAAEAARGKLKRSSLSDFIEVVESASSLLVGNLKRAADLVQSFKQVAVDRSYFDRSQ 257 A FA E ARG+LKRS L++F++ ASS LV NL RAA+L+QSFKQVA DR+Y D+ Sbjct: 678 AAVFATEVARGELKRSRLNEFLDTTRDASSQLVANLNRAAELIQSFKQVAADRNYSDQRL 737 Query: 258 FDLGAVTEQVLSNLRPALPKNNLALEVDCPPGLAMNGYPGPYGQVLTNLFVNSVAHAFPD 317 FDLG +TEQV+ +LRP L K+NL L V+C PGL MN YPGPYGQVLTNLF+NSVAHAFP+ Sbjct: 738 FDLGDLTEQVVMSLRPGLRKHNLTLNVECQPGLTMNSYPGPYGQVLTNLFLNSVAHAFPN 797 Query: 318 GKGGIITIRLRASGADQVEILFADNGCGMDDDVLRQAFDPFFTTRRDIGRIGLGLHIVHN 377 G+ G + I +RA+G D V + +AD+GCGM DV R+AFDPFFTTRRD G GLGLHIV+N Sbjct: 798 GRAGTVEIEVRAAGNDHVVVAYADDGCGMSLDVRRRAFDPFFTTRRDQGGTGLGLHIVYN 857 Query: 378 IVTNRLGGELHLDSAPGMGTRMRITLPRVAPQ 409 IVTNRLGG L LDS PG GTR+ +TLPR+APQ Sbjct: 858 IVTNRLGGRLELDSEPGNGTRILMTLPRIAPQ 889