BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0093.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001206220.1| putative ABC transporter permease [Bradyrhiz... 586 e-165 ref|YP_001240555.1| putative ABC transporter permease [Bradyrhiz... 560 e-157 ref|NP_772789.1| ABC transporter permease protein [Bradyrhizobiu... 523 e-146 ref|ZP_07111705.1| putative Amino acid or sugar ABC transport sy... 409 e-112 ref|ZP_05038670.1| amino acid or sugar ABC transport system, per... 403 e-110 >ref|YP_001206220.1| putative ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL77995.1| putative ABC transporter (permease protein) [Bradyrhizobium sp. ORS 278] Length = 369 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 298/324 (91%), Positives = 314/324 (96%) Query: 1 VFGGFVALYGKNPLDLYFYMYYGAFGTAFSWQNTLTRAAPLILTALCTALPAQLGMVIIG 60 VFG FVALYGKNPLDLY+YMYYGAFGT FSWQNTL+RAAPLILTALCTALPAQLGMVIIG Sbjct: 46 VFGLFVALYGKNPLDLYWYMYYGAFGTWFSWQNTLSRAAPLILTALCTALPAQLGMVIIG 105 Query: 61 GEGALLIGALSATAAALALQGAAPIVVQIAMVIAGMIGGGLWITLSGGLRQYRGVNETIS 120 GEGALLIGALSAT+ ALALQG P++VQIAMVIAGM GGG+WI LSGGLRQYRGVNETIS Sbjct: 106 GEGALLIGALSATSVALALQGMPPLLVQIAMVIAGMTGGGVWILLSGGLRQYRGVNETIS 165 Query: 121 SLLLVYIALAILNHLVEGPMRDPASLNKPSTREIGAANMIGTIPGTDVHWGLVFGLVAAV 180 SLLLVYIALAILNHLVEGPMRDPASLNKPSTREIGAANMIGTIPGTDVHWGLVFGL+ A+ Sbjct: 166 SLLLVYIALAILNHLVEGPMRDPASLNKPSTREIGAANMIGTIPGTDVHWGLVFGLMLAI 225 Query: 181 AAYILIYHTTFGFAARVAGGNIRAAKIVGLSVGKLILTVCFLAGSCAGLAGMIEVAAVQG 240 A+Y+LIYHTTFGFAARVAGGNIRAAKIVGLSVGKLILTVCFLAG+CAGLAGM+EVAAVQG Sbjct: 226 ASYVLIYHTTFGFAARVAGGNIRAAKIVGLSVGKLILTVCFLAGACAGLAGMVEVAAVQG 285 Query: 241 RTNANLAAGYGFTGILVAFLARQNPLAIIPVAILLGGISASGGLLQRRLGLPDASVLVLQ 300 RTNANLA GYGFTGILVAFLARQNPLAIIPVAILLGGI+ASGGLLQRRLGLPDASVLVLQ Sbjct: 286 RTNANLAVGYGFTGILVAFLARQNPLAIIPVAILLGGINASGGLLQRRLGLPDASVLVLQ 345 Query: 301 GIIFVFVLASDALYGRLGFLKGKA 324 GIIF+ VLASDALYGR+GFLKGK+ Sbjct: 346 GIIFISVLASDALYGRIGFLKGKS 369 >ref|YP_001240555.1| putative ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ36649.1| nucleoside ABC transporter membrane protein [Bradyrhizobium sp. BTAi1] Length = 369 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 294/324 (90%), Positives = 311/324 (95%) Query: 1 VFGGFVALYGKNPLDLYFYMYYGAFGTAFSWQNTLTRAAPLILTALCTALPAQLGMVIIG 60 +FG FVAL+GKNPLDLY+YMYYGAFGT FSWQNTLTRAAPLILTALCTALPAQLGMVIIG Sbjct: 46 LFGIFVALFGKNPLDLYWYMYYGAFGTWFSWQNTLTRAAPLILTALCTALPAQLGMVIIG 105 Query: 61 GEGALLIGALSATAAALALQGAAPIVVQIAMVIAGMIGGGLWITLSGGLRQYRGVNETIS 120 GEGALLIGAL+AT+AALALQG P+VVQIAMV+AGM GGGLWI LSG LRQYRGVNETIS Sbjct: 106 GEGALLIGALAATSAALALQGMPPLVVQIAMVVAGMAGGGLWILLSGALRQYRGVNETIS 165 Query: 121 SLLLVYIALAILNHLVEGPMRDPASLNKPSTREIGAANMIGTIPGTDVHWGLVFGLVAAV 180 SLLLVYIALAILNHLVEG MRDPASLNKPSTREIGAANMIG+IPGTDVHWGLVFGL+ V Sbjct: 166 SLLLVYIALAILNHLVEGVMRDPASLNKPSTREIGAANMIGSIPGTDVHWGLVFGLIVTV 225 Query: 181 AAYILIYHTTFGFAARVAGGNIRAAKIVGLSVGKLILTVCFLAGSCAGLAGMIEVAAVQG 240 AAY+LIYHTTFGFAARVAGGNIRAAKIVGLSVG+LILT CFLAG+CAGLAGM+EVAAVQG Sbjct: 226 AAYVLIYHTTFGFAARVAGGNIRAAKIVGLSVGRLILTACFLAGACAGLAGMVEVAAVQG 285 Query: 241 RTNANLAAGYGFTGILVAFLARQNPLAIIPVAILLGGISASGGLLQRRLGLPDASVLVLQ 300 RTNANLA GYGFTGILVAFLARQNPLAIIPVAILLGGI+ASGGLLQRRLGLPDASVLVLQ Sbjct: 286 RTNANLAVGYGFTGILVAFLARQNPLAIIPVAILLGGINASGGLLQRRLGLPDASVLVLQ 345 Query: 301 GIIFVFVLASDALYGRLGFLKGKA 324 GIIF+ VLASDALYGR+GFLKGK+ Sbjct: 346 GIIFISVLASDALYGRIGFLKGKS 369 >ref|NP_772789.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51414.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 370 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 298/324 (91%), Positives = 311/324 (95%) Query: 1 VFGGFVALYGKNPLDLYFYMYYGAFGTAFSWQNTLTRAAPLILTALCTALPAQLGMVIIG 60 VFG FVA++GKNPLDLYFYMYYGAFGT FSWQNTLTRAAPLILTALCTALPAQLGMVIIG Sbjct: 47 VFGIFVAMFGKNPLDLYFYMYYGAFGTWFSWQNTLTRAAPLILTALCTALPAQLGMVIIG 106 Query: 61 GEGALLIGALSATAAALALQGAAPIVVQIAMVIAGMIGGGLWITLSGGLRQYRGVNETIS 120 GEGALLIGALSAT+AALALQG P+VVQIAMVIAG+IGGGLWI LSG LRQYRGVNETIS Sbjct: 107 GEGALLIGALSATSAALALQGMPPLVVQIAMVIAGVIGGGLWIMLSGALRQYRGVNETIS 166 Query: 121 SLLLVYIALAILNHLVEGPMRDPASLNKPSTREIGAANMIGTIPGTDVHWGLVFGLVAAV 180 SLLLVYIALAILNHLVEG MRDPASLNKPSTREIGAANMIG+IPGTDVHWGLVFGL+AA+ Sbjct: 167 SLLLVYIALAILNHLVEGLMRDPASLNKPSTREIGAANMIGSIPGTDVHWGLVFGLIAAI 226 Query: 181 AAYILIYHTTFGFAARVAGGNIRAAKIVGLSVGKLILTVCFLAGSCAGLAGMIEVAAVQG 240 AAYILIYHT FGFAARVAG NIRAAKIVGL V KLILTVCFLAG AGLAGM+EVAAVQG Sbjct: 227 AAYILIYHTVFGFAARVAGANIRAAKIVGLGVSKLILTVCFLAGGAAGLAGMVEVAAVQG 286 Query: 241 RTNANLAAGYGFTGILVAFLARQNPLAIIPVAILLGGISASGGLLQRRLGLPDASVLVLQ 300 RTNANLAAGYGFTGILVAFLARQNPLA+IPVAILLGGISASGGLLQRRLGLPDASVLVLQ Sbjct: 287 RTNANLAAGYGFTGILVAFLARQNPLAVIPVAILLGGISASGGLLQRRLGLPDASVLVLQ 346 Query: 301 GIIFVFVLASDALYGRLGFLKGKA 324 GIIFVFVLASDALYGR+GFLKG++ Sbjct: 347 GIIFVFVLASDALYGRIGFLKGRS 370 >ref|ZP_07111705.1| putative Amino acid or sugar ABC transport system, permease protein [Oscillatoria sp. PCC 6506] emb|CBN56871.1| putative Amino acid or sugar ABC transport system, permease protein [Oscillatoria sp. PCC 6506] Length = 359 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/323 (63%), Positives = 256/323 (79%) Query: 1 VFGGFVALYGKNPLDLYFYMYYGAFGTAFSWQNTLTRAAPLILTALCTALPAQLGMVIIG 60 +FG F A G NPL +Y +Y AFG+ FS+QN+L RAAPL+L++LCT LPA+LG+VIIG Sbjct: 35 LFGIFCAAAGANPLAVYGSIYKAAFGSWFSFQNSLIRAAPLMLSSLCTVLPARLGLVIIG 94 Query: 61 GEGALLIGALSATAAALALQGAAPIVVQIAMVIAGMIGGGLWITLSGGLRQYRGVNETIS 120 EGA+++G L A A LAL A P VVQ+ M IAG+I GGLWI L+G LR YRGVNETIS Sbjct: 95 NEGAIVMGGLGAIATGLALNSAPPTVVQLGMAIAGIISGGLWIALAGALRYYRGVNETIS 154 Query: 121 SLLLVYIALAILNHLVEGPMRDPASLNKPSTREIGAANMIGTIPGTDVHWGLVFGLVAAV 180 SLLL YIA+A+LNHLV GPMRDP+SLNKPS+ + NM+GT+PGT VH+GL+FGL+ Sbjct: 155 SLLLNYIAIALLNHLVGGPMRDPSSLNKPSSYPLADVNMLGTLPGTRVHYGLIFGLIVCA 214 Query: 181 AAYILIYHTTFGFAARVAGGNIRAAKIVGLSVGKLILTVCFLAGSCAGLAGMIEVAAVQG 240 AY+LI TTFGFA R AGGN+RAA++ GL VGKL L +CFL G+CAGLAGM+EVAAV G Sbjct: 215 IAYVLIQRTTFGFAVRTAGGNVRAARMAGLPVGKLTLIICFLGGACAGLAGMVEVAAVHG 274 Query: 241 RTNANLAAGYGFTGILVAFLARQNPLAIIPVAILLGGISASGGLLQRRLGLPDASVLVLQ 300 + N +L A YG++GILVAF+ARQNPLA + ++ILLGGI ASGG+LQR LPDA+VLV Q Sbjct: 275 KANESLNASYGYSGILVAFIARQNPLAAVLISILLGGILASGGILQRSHNLPDATVLVFQ 334 Query: 301 GIIFVFVLASDALYGRLGFLKGK 323 G++F+ +L S++LYG+L F K + Sbjct: 335 GLVFLVILFSESLYGKLPFFKQQ 357 >ref|ZP_05038670.1| amino acid or sugar ABC transport system, permease protein, putative [Synechococcus sp. PCC 7335] gb|EDX87405.1| amino acid or sugar ABC transport system, permease protein, putative [Synechococcus sp. PCC 7335] Length = 368 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 204/324 (62%), Positives = 257/324 (79%), Gaps = 1/324 (0%) Query: 1 VFGGFVALYGKNPLDLYFYMYYGAFGTAFSWQNTLTRAAPLILTALCTALPAQLGMVIIG 60 +FG F AL G NP ++Y ++ AFG+A ++QNTL RA+PL+L+ALCTALPA+LG+VIIG Sbjct: 24 LFGLFCALAGANPFEVYGLIWKAAFGSASTFQNTLIRASPLMLSALCTALPARLGLVIIG 83 Query: 61 GEGALLIGALSATAAALALQGA-APIVVQIAMVIAGMIGGGLWITLSGGLRQYRGVNETI 119 EGAL++G L+A + L L A P++VQIAM AG++ GGLWI +G LR YR VNETI Sbjct: 84 NEGALVMGGLAAVSVGLMLGTALPPLLVQIAMATAGLVAGGLWIGAAGALRHYRAVNETI 143 Query: 120 SSLLLVYIALAILNHLVEGPMRDPASLNKPSTREIGAANMIGTIPGTDVHWGLVFGLVAA 179 SSLLL YIA+A+LNHLV GPMRDP+SLNKPST + NM+G+IP T VHWGL++GL+A Sbjct: 144 SSLLLNYIAIALLNHLVGGPMRDPSSLNKPSTFPLADVNMLGSIPTTRVHWGLLYGLIAC 203 Query: 180 VAAYILIYHTTFGFAARVAGGNIRAAKIVGLSVGKLILTVCFLAGSCAGLAGMIEVAAVQ 239 + Y L+ TTFGFAAR AGGN+RAA+I GL VGKL + +CFLAGSCAGLAGM+EVAAVQ Sbjct: 204 IITYFLMQRTTFGFAARTAGGNVRAARIAGLPVGKLTVMICFLAGSCAGLAGMVEVAAVQ 263 Query: 240 GRTNANLAAGYGFTGILVAFLARQNPLAIIPVAILLGGISASGGLLQRRLGLPDASVLVL 299 G N +L AGYG+ GILVAF AR NPLA + +++L+GGI ASGG+LQR L LPDA+VLV Sbjct: 264 GSANESLNAGYGYGGILVAFAARHNPLAAVLISLLVGGILASGGILQRSLELPDATVLVF 323 Query: 300 QGIIFVFVLASDALYGRLGFLKGK 323 QG++F+ VL SD+LYG++ F K K Sbjct: 324 QGLVFLVVLYSDSLYGKIPFFKEK 347