BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0067.p         (37 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_103417.1| hypothetical protein msr1956 [Mesorhizobium lot...    40   0.10 
ref|NP_106634.1| hypothetical protein msr6074 [Mesorhizobium lot...    40   0.17 
ref|NP_108276.1| hypothetical protein mll8100 [Mesorhizobium lot...    39   0.25 
ref|NP_109539.1| hypothetical protein msr9767 [Mesorhizobium lot...    39   0.35 
ref|NP_769117.1| transposase [Bradyrhizobium japonicum USDA 110]...    39   0.38 

>ref|NP_103417.1| hypothetical protein msr1956 [Mesorhizobium loti MAFF303099]
 dbj|BAB49203.1| msr1956 [Mesorhizobium loti MAFF303099]
          Length = 92

 Score = 40.4 bits (93), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 5  ATRDDKLAASYLALVHGASIRLWLRA 30
          ATR DKLAA++LA++  AS+RLWLRA
Sbjct: 62 ATRYDKLAANFLAMIQPASMRLWLRA 87


>ref|NP_106634.1| hypothetical protein msr6074 [Mesorhizobium loti MAFF303099]
 dbj|BAB52420.1| msr6074 [Mesorhizobium loti MAFF303099]
          Length = 32

 Score = 39.7 bits (91), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 5  ATRDDKLAASYLALVHGASIRLWLRA 30
          ATR DKLAA++LA++  AS+RLWLRA
Sbjct: 2  ATRYDKLAANFLAMIQLASMRLWLRA 27


>ref|NP_108276.1| hypothetical protein mll8100 [Mesorhizobium loti MAFF303099]
 dbj|BAB53737.1| mll8100 [Mesorhizobium loti MAFF303099]
          Length = 254

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 5   ATRDDKLAASYLALVHGASIRLWLRA 30
           ATR DKLAA++LA+V  AS+RLWLRA
Sbjct: 224 ATRYDKLAANFLAMVQLASMRLWLRA 249


>ref|NP_109539.1| hypothetical protein msr9767 [Mesorhizobium loti MAFF303099]
 dbj|BAB54878.1| msr9767 [Mesorhizobium loti MAFF303099]
          Length = 91

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 5  ATRDDKLAASYLALVHGASIRLWLRA 30
          ATR DKLAA++ A++  AS+RLWLRA
Sbjct: 61 ATRYDKLAANFFAMIQLASMRLWLRA 86


>ref|NP_769117.1| transposase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47742.1| blr2477 [Bradyrhizobium japonicum USDA 110]
          Length = 284

 Score = 38.5 bits (88), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 21/25 (84%)

Query: 5   ATRDDKLAASYLALVHGASIRLWLR 29
           ATR DKLAA+YLA +  ASIR+WLR
Sbjct: 254 ATRYDKLAANYLAFIKLASIRIWLR 278