BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0065.p         (228 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_04637636.1| HAMP domain protein [Yersinia intermedia ATCC...    38   1.2  

>ref|ZP_04637636.1| HAMP domain protein [Yersinia intermedia ATCC 29909]
 gb|EEQ18186.1| HAMP domain protein [Yersinia intermedia ATCC 29909]
          Length = 986

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 64  LPTLAATADASMQNYKKSKLPWNQNNDGFLKAVNNEYWCGSIIKI 108
           +P L A  +A   N   SKLP N  N   +    N++W GS+++I
Sbjct: 279 IPVLQALLNAQKNNQAGSKLPANNTNRSIMFEAQNQHWFGSVVEI 323