BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0055.p         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772978.1| hypothetical protein blr6338 [Bradyrhizobium ja...   118   2e-25
ref|ZP_08825380.1| helix-turn-helix domain protein [Thiorhodococ...   107   4e-22
ref|NP_772986.1| hypothetical protein bll6346 [Bradyrhizobium ja...   107   6e-22
ref|YP_004610706.1| XRE family transcriptional regulator [Mesorh...   103   6e-21
ref|XP_002536727.1| conserved hypothetical protein [Ricinus comm...   103   6e-21

>ref|NP_772978.1| hypothetical protein blr6338 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51603.1| blr6338 [Bradyrhizobium japonicum USDA 110]
          Length = 117

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 66/76 (86%)

Query: 1  LLGIDQRQLAELSGLSVPTIQRMETSEGTIRGNVDSLVKLIDALGTAGVEVINEGAISSG 60
          LLGIDQR+LAELSGLSVPTIQRME SE  +RGNVDSLVKLI AL TAG+E+I+EGA+SS 
Sbjct: 24 LLGIDQRRLAELSGLSVPTIQRMEASEAMVRGNVDSLVKLITALDTAGIELIDEGAVSSA 83

Query: 61 GGRGVRLKAGSGSPKV 76
           GRGVRLK  SGS K+
Sbjct: 84 EGRGVRLKVNSGSAKI 99


>ref|ZP_08825380.1| helix-turn-helix domain protein [Thiorhodococcus drewsii AZ1]
 gb|EGV27970.1| helix-turn-helix domain protein [Thiorhodococcus drewsii AZ1]
          Length = 89

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 62/73 (84%)

Query: 1  LLGIDQRQLAELSGLSVPTIQRMETSEGTIRGNVDSLVKLIDALGTAGVEVINEGAISSG 60
          LLGIDQRQLAE +GLS+PTIQRME S+G +RGNVDSLVKL+DA   AG+E+I EGA+S G
Sbjct: 13 LLGIDQRQLAEAAGLSLPTIQRMEASQGQVRGNVDSLVKLVDAFERAGLELIGEGAVSPG 72

Query: 61 GGRGVRLKAGSGS 73
          GGRGVRLK   G+
Sbjct: 73 GGRGVRLKVAPGT 85


>ref|NP_772986.1| hypothetical protein bll6346 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51611.1| bll6346 [Bradyrhizobium japonicum USDA 110]
          Length = 106

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 61/78 (78%)

Query: 1  LLGIDQRQLAELSGLSVPTIQRMETSEGTIRGNVDSLVKLIDALGTAGVEVINEGAISSG 60
          LL IDQRQ AEL+GLSVPTIQRME S+G IRGNVDSL+KL+ AL  AG+E+IN G  SS 
Sbjct: 13 LLNIDQRQTAELAGLSVPTIQRMEASDGVIRGNVDSLMKLVSALENAGIELINPGVTSSA 72

Query: 61 GGRGVRLKAGSGSPKVRT 78
          GGRGVRL+     PK++ 
Sbjct: 73 GGRGVRLREHVAKPKMKN 90


>ref|YP_004610706.1| XRE family transcriptional regulator [Mesorhizobium opportunistum
          WSM2075]
 gb|AEH86612.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
          Length = 104

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 61/76 (80%)

Query: 1  LLGIDQRQLAELSGLSVPTIQRMETSEGTIRGNVDSLVKLIDALGTAGVEVINEGAISSG 60
          LLGIDQR+LAELSGLSVPTIQRME SE  IRGNVDSL+KLI AL  AGVE+I +GA S  
Sbjct: 13 LLGIDQRRLAELSGLSVPTIQRMEASESIIRGNVDSLMKLIGALDLAGVELIADGASSQI 72

Query: 61 GGRGVRLKAGSGSPKV 76
          GGRGVRLKA     KV
Sbjct: 73 GGRGVRLKADFDPAKV 88


>ref|XP_002536727.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF25657.1| conserved hypothetical protein [Ricinus communis]
          Length = 100

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 59/68 (86%)

Query: 1  LLGIDQRQLAELSGLSVPTIQRMETSEGTIRGNVDSLVKLIDALGTAGVEVINEGAISSG 60
          LLGIDQRQLAEL+G+SVPTIQRME S   +RGNVDSL++L+ AL  AG+EVINEGAIS  
Sbjct: 13 LLGIDQRQLAELAGVSVPTIQRMEASPDVVRGNVDSLMRLLAALNEAGIEVINEGAISQD 72

Query: 61 GGRGVRLK 68
          GGRGVRLK
Sbjct: 73 GGRGVRLK 80