BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0053.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772980.1| hydrogenlyase component [Bradyrhizobium japonic... 497 e-139 ref|YP_779889.1| respiratory-chain NADH dehydrogenase subunit 1 ... 493 e-137 ref|YP_530819.1| respiratory-chain NADH dehydrogenase subunit 1 ... 491 e-137 ref|YP_570976.1| respiratory-chain NADH dehydrogenase subunit 1 ... 475 e-132 ref|YP_004610704.1| putative hydrogenase protein [Mesorhizobium ... 455 e-126 >ref|NP_772980.1| hydrogenlyase component [Bradyrhizobium japonicum USDA 110] dbj|BAC51605.1| hycC [Bradyrhizobium japonicum USDA 110] Length = 318 Score = 497 bits (1280), Expect = e-139, Method: Compositional matrix adjust. Identities = 275/318 (86%), Positives = 291/318 (91%) Query: 1 MVVISDILVQLGQMALVLLLAPLLTGVVRKIKARLLRRKGPSIFQPYRDLLRLLRKEVVL 60 MVV+SDILVQ QM LVLLLAPLLTG VRKIKARL+RR+G S+FQPY DLLRLLRKEVVL Sbjct: 1 MVVMSDILVQGMQMLLVLLLAPLLTGFVRKIKARLVRRQGASVFQPYLDLLRLLRKEVVL 60 Query: 61 AENASWLFRVTPYVTFAAIWVAAALVPTFATGLQFNWSADLIAIVALLGSARFFLALAGM 120 A+NASWLFRVTPYVTFAAIWVAAALVPTFATGL FNW+ADLIAIVALLGSARFFLALAGM Sbjct: 61 ADNASWLFRVTPYVTFAAIWVAAALVPTFATGLLFNWTADLIAIVALLGSARFFLALAGM 120 Query: 121 DVGTSFGGIGSSREVMIAALAEPAMLLMVFCVALIAGSTQLSTVATFMASSEVGLRVSLG 180 DVGTSFGGIGSSREVMIAALAEPAMLL VFC ALIAGSTQLSTVA FMASS VGLRVSLG Sbjct: 121 DVGTSFGGIGSSREVMIAALAEPAMLLFVFCTALIAGSTQLSTVANFMASSYVGLRVSLG 180 Query: 181 MAMIALIMVALAENARIPVDNPATHLELTMVHEAMILEYSGRHLAMIEFGAFLKLLLYIS 240 MAMIALIMVALAENARIPVDNPATHLELTMVHEAM+LEYSGRHLAMIEFGAFLKLLLY+S Sbjct: 181 MAMIALIMVALAENARIPVDNPATHLELTMVHEAMVLEYSGRHLAMIEFGAFLKLLLYVS 240 Query: 241 LIICVFFPWQITTEGAGPLSYLVSVAVYILKLAIASFLLAVFETATAKMRVFRVPEFLGA 300 LI CVF PW+I G GP SY + Y++KLA+A F LA+FETATAKMRVFRVP+FLGA Sbjct: 241 LIACVFLPWKIAVFGTGPFSYAIGAVAYLVKLAVAGFFLALFETATAKMRVFRVPQFLGA 300 Query: 301 ALMLGLLGTLLRFVSRGF 318 ALMLGLLGTLL FVS+ F Sbjct: 301 ALMLGLLGTLLLFVSKSF 318 >ref|YP_779889.1| respiratory-chain NADH dehydrogenase subunit 1 [Rhodopseudomonas palustris BisA53] gb|ABJ04909.1| respiratory-chain NADH dehydrogenase, subunit 1 [Rhodopseudomonas palustris BisA53] Length = 319 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 260/316 (82%), Positives = 289/316 (91%) Query: 1 MVVISDILVQLGQMALVLLLAPLLTGVVRKIKARLLRRKGPSIFQPYRDLLRLLRKEVVL 60 +V++ DILVQ QM LV +LAPLLTG VRK+KARL RR+GPS+ QPYRDLLRLLRKE VL Sbjct: 2 VVILDDILVQGFQMLLVFMLAPLLTGFVRKVKARLTRRQGPSLLQPYRDLLRLLRKEAVL 61 Query: 61 AENASWLFRVTPYVTFAAIWVAAALVPTFATGLQFNWSADLIAIVALLGSARFFLALAGM 120 A+NASWLFR TPY+TFAAIWVAAALVPTFATGL FNW+ADLI IVALLG+ARFFLALAGM Sbjct: 62 ADNASWLFRTTPYLTFAAIWVAAALVPTFATGLLFNWTADLIVIVALLGTARFFLALAGM 121 Query: 121 DVGTSFGGIGSSREVMIAALAEPAMLLMVFCVALIAGSTQLSTVATFMASSEVGLRVSLG 180 D+GT+FGGIGSSREVMIAALAEPAMLL+VF VAL+AGSTQLSTVA F+ASS+VGLRVSLG Sbjct: 122 DIGTAFGGIGSSREVMIAALAEPAMLLIVFGVALVAGSTQLSTVANFIASSQVGLRVSLG 181 Query: 181 MAMIALIMVALAENARIPVDNPATHLELTMVHEAMILEYSGRHLAMIEFGAFLKLLLYIS 240 +AMIAL+MVALAENARIPVDNP+THLELTMVHEAMILEYSGRHLAMIEFGAFLKLLLY+S Sbjct: 182 LAMIALVMVALAENARIPVDNPSTHLELTMVHEAMILEYSGRHLAMIEFGAFLKLLLYVS 241 Query: 241 LIICVFFPWQITTEGAGPLSYLVSVAVYILKLAIASFLLAVFETATAKMRVFRVPEFLGA 300 LI C+FFPW I G PLSY+V +Y+LK+ +A FLLA+FETATAKMRVFRVP+FLGA Sbjct: 242 LIGCLFFPWGIAIAGDAPLSYVVGAGLYLLKVTVAGFLLALFETATAKMRVFRVPQFLGA 301 Query: 301 ALMLGLLGTLLRFVSR 316 ALMLGLLGTLL FVSR Sbjct: 302 ALMLGLLGTLLLFVSR 317 >ref|YP_530819.1| respiratory-chain NADH dehydrogenase subunit 1 [Rhodopseudomonas palustris BisB18] gb|ABD86500.1| respiratory-chain NADH dehydrogenase, subunit 1 [Rhodopseudomonas palustris BisB18] Length = 316 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 266/313 (84%), Positives = 293/313 (93%) Query: 4 ISDILVQLGQMALVLLLAPLLTGVVRKIKARLLRRKGPSIFQPYRDLLRLLRKEVVLAEN 63 ISDILVQ QM LV LLAPLLTG +RK+KARL+RRKG SIFQPYRDLLRLLRKEVVLA+N Sbjct: 2 ISDILVQGIQMLLVFLLAPLLTGFIRKVKARLMRRKGASIFQPYRDLLRLLRKEVVLADN 61 Query: 64 ASWLFRVTPYVTFAAIWVAAALVPTFATGLQFNWSADLIAIVALLGSARFFLALAGMDVG 123 ASWLFR TPY+TFAAIWVAAALVPTFATGL FNW+ADLI IVALLG+ARFFLALAGMDVG Sbjct: 62 ASWLFRATPYLTFAAIWVAAALVPTFATGLLFNWTADLIVIVALLGTARFFLALAGMDVG 121 Query: 124 TSFGGIGSSREVMIAALAEPAMLLMVFCVALIAGSTQLSTVATFMASSEVGLRVSLGMAM 183 T+FGG+GSSREVMIAALAEPAMLL+VFCVAL+AGSTQLSTVA F+ASS+VGLRVSLGMAM Sbjct: 122 TAFGGLGSSREVMIAALAEPAMLLIVFCVALVAGSTQLSTVANFIASSQVGLRVSLGMAM 181 Query: 184 IALIMVALAENARIPVDNPATHLELTMVHEAMILEYSGRHLAMIEFGAFLKLLLYISLII 243 IAL++VALAENARIPVDNP+THLELTMVHEAMILEYSGRHLA+IEFGAFLKLLLYISLI Sbjct: 182 IALVIVALAENARIPVDNPSTHLELTMVHEAMILEYSGRHLALIEFGAFLKLLLYISLIG 241 Query: 244 CVFFPWQITTEGAGPLSYLVSVAVYILKLAIASFLLAVFETATAKMRVFRVPEFLGAALM 303 C+FFPW+I GAGPLSY++ +Y+LK+ +A FLLAVFETATAKMRVFRVP+FLGAALM Sbjct: 242 CLFFPWEIAVFGAGPLSYVIGAGMYLLKVTVAGFLLAVFETATAKMRVFRVPQFLGAALM 301 Query: 304 LGLLGTLLRFVSR 316 LGLLGTLL FVS+ Sbjct: 302 LGLLGTLLLFVSK 314 >ref|YP_570976.1| respiratory-chain NADH dehydrogenase subunit 1 [Rhodopseudomonas palustris BisB5] gb|ABE41075.1| respiratory-chain NADH dehydrogenase, subunit 1 [Rhodopseudomonas palustris BisB5] Length = 316 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 257/315 (81%), Positives = 289/315 (91%) Query: 3 VISDILVQLGQMALVLLLAPLLTGVVRKIKARLLRRKGPSIFQPYRDLLRLLRKEVVLAE 62 +I+DI VQ QM LV LLAPLLTG +RK+KARL RR+G S+ QPYRDL+RLLRK+VVLA+ Sbjct: 1 MIADIAVQGLQMLLVFLLAPLLTGFIRKVKARLQRRRGASMLQPYRDLIRLLRKDVVLAD 60 Query: 63 NASWLFRVTPYVTFAAIWVAAALVPTFATGLQFNWSADLIAIVALLGSARFFLALAGMDV 122 NASWLFR TPYVTFAAIWVAAALVPTFATGL FNW+ADLI +VALLG+ARFFLALAGMD+ Sbjct: 61 NASWLFRATPYVTFAAIWVAAALVPTFATGLMFNWTADLIVVVALLGTARFFLALAGMDI 120 Query: 123 GTSFGGIGSSREVMIAALAEPAMLLMVFCVALIAGSTQLSTVATFMASSEVGLRVSLGMA 182 GTSFGGIGSSREVMIAALAEPAML++VFCVAL+AGST LSTVA ++AS+EVGLRVSLG+A Sbjct: 121 GTSFGGIGSSREVMIAALAEPAMLMIVFCVALVAGSTHLSTVANYIASTEVGLRVSLGLA 180 Query: 183 MIALIMVALAENARIPVDNPATHLELTMVHEAMILEYSGRHLAMIEFGAFLKLLLYISLI 242 MIAL+MVALAENARIPVDNP+THLELTMVHEAMILEYSGRHLAMIEFGA LKLLLY+SLI Sbjct: 181 MIALVMVALAENARIPVDNPSTHLELTMVHEAMILEYSGRHLAMIEFGAQLKLLLYVSLI 240 Query: 243 ICVFFPWQITTEGAGPLSYLVSVAVYILKLAIASFLLAVFETATAKMRVFRVPEFLGAAL 302 +C+F+PW I GAGPL+YL A+Y+ KL +A FLLAVFETATAKMRVFRVP+FLGAAL Sbjct: 241 VCLFYPWGIGIFGAGPLAYLAGAALYMGKLTVAGFLLAVFETATAKMRVFRVPQFLGAAL 300 Query: 303 MLGLLGTLLRFVSRG 317 MLGLLGTLL FVS+G Sbjct: 301 MLGLLGTLLLFVSKG 315 >ref|YP_004610704.1| putative hydrogenase protein [Mesorhizobium opportunistum WSM2075] gb|AEH86610.1| putative hydrogenase protein [Mesorhizobium opportunistum WSM2075] Length = 316 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 253/313 (80%), Positives = 278/313 (88%) Query: 4 ISDILVQLGQMALVLLLAPLLTGVVRKIKARLLRRKGPSIFQPYRDLLRLLRKEVVLAEN 63 I ++ VQ QMALVLLLAPLLTG VRK+KARLLRR+GPS+ QPYRDLLRL+RKEVVLA+N Sbjct: 2 ILELAVQGAQMALVLLLAPLLTGFVRKVKARLLRRQGPSLVQPYRDLLRLMRKEVVLADN 61 Query: 64 ASWLFRVTPYVTFAAIWVAAALVPTFATGLQFNWSADLIAIVALLGSARFFLALAGMDVG 123 ASWLFRVTPY+ FAA WVAAAL+PTFATGL F+W+ADLIAIVALLGSARFFLALAGMDVG Sbjct: 62 ASWLFRVTPYLIFAATWVAAALIPTFATGLTFSWAADLIAIVALLGSARFFLALAGMDVG 121 Query: 124 TSFGGIGSSREVMIAALAEPAMLLMVFCVALIAGSTQLSTVATFMASSEVGLRVSLGMAM 183 TSFGGIGSSREVMIA+LAEPAMLL+VF +AL+AG+TQLSTVA FM S +VGLRVSLGM++ Sbjct: 122 TSFGGIGSSREVMIASLAEPAMLLIVFSLALVAGATQLSTVAAFMGSPQVGLRVSLGMSL 181 Query: 184 IALIMVALAENARIPVDNPATHLELTMVHEAMILEYSGRHLAMIEFGAFLKLLLYISLII 243 IAL+MVA+AENARIPVDNPATHLELTMVHEAM+LEYSGRHLAMIEF AFLKLLLY+SLI Sbjct: 182 IALVMVAVAENARIPVDNPATHLELTMVHEAMVLEYSGRHLAMIEFAAFLKLLLYMSLIS 241 Query: 244 CVFFPWQITTEGAGPLSYLVSVAVYILKLAIASFLLAVFETATAKMRVFRVPEFLGAALM 303 CVF PW T GAG S V YI KLA+ LLAVFETA AKMRVFRVP+FLGAALM Sbjct: 242 CVFLPWGAATTGAGLQSLAAGVVAYIGKLAVCGVLLAVFETAIAKMRVFRVPDFLGAALM 301 Query: 304 LGLLGTLLRFVSR 316 L LL TLLRFVSR Sbjct: 302 LALLATLLRFVSR 314