BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0051.p (482 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772982.1| hydrogenase 4 subunit F [Bradyrhizobium japonic... 825 0.0 ref|YP_004610702.1| NADH/Ubiquinone/plastoquinone (complex I) [M... 802 0.0 ref|YP_484884.1| hydrogenase 4 subunit F [Rhodopseudomonas palus... 782 0.0 ref|YP_570974.1| hydrogenase 4 subunit F [Rhodopseudomonas palus... 777 0.0 ref|YP_779891.1| hydrogenase 4 subunit F [Rhodopseudomonas palus... 775 0.0 >ref|NP_772982.1| hydrogenase 4 subunit F [Bradyrhizobium japonicum USDA 110] dbj|BAC51607.1| hyfF [Bradyrhizobium japonicum USDA 110] Length = 483 Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/480 (86%), Positives = 444/480 (92%) Query: 3 AASDAVTWVLLIPITAAAVLAALPGYRLTAGLNIVASLGTLLAALSLLVVERPQPGQYLL 62 A+ D+V +L+IPI +AA+LA LPGYRLTA LN+VASL T L+ALSL V+ERP PG Y+L Sbjct: 4 ASFDSVAAILVIPIGSAALLAVLPGYRLTARLNVVASLATFLSALSLFVIERPPPGPYVL 63 Query: 63 IDDLNIVFIVLNTFVGFTTSVFSASYIAHELETGRLTPGYLRFYHAMYQVMMFGMNLAFV 122 +DDLNIVFIVLNTFVGFTTS+FSASYIAHELETGRLTP YLRFYHAMYQ MMFGMNLAFV Sbjct: 64 VDDLNIVFIVLNTFVGFTTSIFSASYIAHELETGRLTPVYLRFYHAMYQTMMFGMNLAFV 123 Query: 123 SNNIGLIWVAVEVATLTTVLMVGIYRTHAALEAAWKYFILGSVGIALALFGTILVYMAAL 182 SNNIGL+WVAVE+ATLTTVLMVGIYRTHAALEAAWKYFILGSVGIA ALFGTILVYMAA Sbjct: 124 SNNIGLMWVAVEIATLTTVLMVGIYRTHAALEAAWKYFILGSVGIAFALFGTILVYMAAR 183 Query: 183 PVVGEGQDAMVWTVLISRAATFDPALLNVAFIFLLLGYGTKVGLAPLHAWLPDAHAEGPT 242 PV+GEGQD MVWT+LI AA FDPALLNVAFIFLLLGYGTKVGLAPLHAWLPDAHAEGPT Sbjct: 184 PVMGEGQDGMVWTLLIQHAANFDPALLNVAFIFLLLGYGTKVGLAPLHAWLPDAHAEGPT 243 Query: 243 PISAVLSGLLLNVALYAVLRFKILLAANPDAISPGPLMVTMGLTSLLFAAFMLYRRRDIK 302 PISAVLSGLLLNVALYA+LRFKILLAANP AI+PGPLMVTMGL SLLFAAFMLYRRRDIK Sbjct: 244 PISAVLSGLLLNVALYALLRFKILLAANPAAIAPGPLMVTMGLISLLFAAFMLYRRRDIK 303 Query: 303 RLFAYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKSGIFYAVGHIAQVKGTQRIA 362 RLFAYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKS IFYAVGHI+Q+KGTQRI+ Sbjct: 304 RLFAYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKSAIFYAVGHISQIKGTQRIS 363 Query: 363 NIRGLTESHPALGWSLVIGVVAIAGLPPLGIFMSEFLIVSSTFARQPLLAIPLVFGLLLA 422 IRGLT +HPALGW LV GVVAIAGLPPLGIFMSEFL+VSSTFARQPLLAI LVFGLLLA Sbjct: 364 RIRGLTATHPALGWGLVTGVVAIAGLPPLGIFMSEFLVVSSTFARQPLLAIVLVFGLLLA 423 Query: 423 FGALILRLTSLAFGEPRGNAAPADASYLPMFAHFALVLTAGIYLPGPLVVWFQHVAHLLG 482 FGAL LRLTS+AFGEPRG+ A+ASY+PMFAH +LVL AG+YLP PLV WFQHVA LLG Sbjct: 424 FGALTLRLTSVAFGEPRGSTKSAEASYVPMFAHLSLVLIAGLYLPAPLVTWFQHVARLLG 483 >ref|YP_004610702.1| NADH/Ubiquinone/plastoquinone (complex I) [Mesorhizobium opportunistum WSM2075] gb|AEH86608.1| NADH/Ubiquinone/plastoquinone (complex I) [Mesorhizobium opportunistum WSM2075] Length = 483 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/477 (85%), Positives = 445/477 (93%) Query: 6 DAVTWVLLIPITAAAVLAALPGYRLTAGLNIVASLGTLLAALSLLVVERPQPGQYLLIDD 65 DAV +LLIP+ +AA+LA LP YR++AGLN+ ASL TLLAA+SL V +R QP QYLL+DD Sbjct: 7 DAVAAILLIPVISAALLAVLPNYRISAGLNVAASLLTLLAAVSLFVTDRLQPDQYLLVDD 66 Query: 66 LNIVFIVLNTFVGFTTSVFSASYIAHELETGRLTPGYLRFYHAMYQVMMFGMNLAFVSNN 125 LN+VFIVLNTFVGFTTSVFSASYIAHEL+TGRLT LRFYHAMYQ+MMFGMNLAFVSNN Sbjct: 67 LNVVFIVLNTFVGFTTSVFSASYIAHELDTGRLTAANLRFYHAMYQIMMFGMNLAFVSNN 126 Query: 126 IGLIWVAVEVATLTTVLMVGIYRTHAALEAAWKYFILGSVGIALALFGTILVYMAALPVV 185 IGL+WVAVE+ATLTTVLMVGIYRTH ALEAAWKYFILGSVGIALALFGTILVYMAA PVV Sbjct: 127 IGLMWVAVELATLTTVLMVGIYRTHEALEAAWKYFILGSVGIALALFGTILVYMAAQPVV 186 Query: 186 GEGQDAMVWTVLISRAATFDPALLNVAFIFLLLGYGTKVGLAPLHAWLPDAHAEGPTPIS 245 GEG +AMVWTVLI+ AA FDPALLNVAF+FLLLGYGTKVGLAPLHAWLPDAHAEGPTPIS Sbjct: 187 GEGTNAMVWTVLIAHAARFDPALLNVAFVFLLLGYGTKVGLAPLHAWLPDAHAEGPTPIS 246 Query: 246 AVLSGLLLNVALYAVLRFKILLAANPDAISPGPLMVTMGLTSLLFAAFMLYRRRDIKRLF 305 AVLSGLLLNVALYAVLRFK+LLAA+P+AI+PGPLM+TMGLTSL+FAAFMLYRRRDIKRLF Sbjct: 247 AVLSGLLLNVALYAVLRFKLLLAASPEAIAPGPLMITMGLTSLVFAAFMLYRRRDIKRLF 306 Query: 306 AYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKSGIFYAVGHIAQVKGTQRIANIR 365 AYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKS IF+ VGHIAQVKGTQ IA IR Sbjct: 307 AYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKSAIFFTVGHIAQVKGTQNIAEIR 366 Query: 366 GLTESHPALGWSLVIGVVAIAGLPPLGIFMSEFLIVSSTFARQPLLAIPLVFGLLLAFGA 425 GLTE+HPALGW+LVIGVVAIAGLPPLGIFMSEFL+VSSTFAR PLLA+PLVFG+LLAFGA Sbjct: 367 GLTETHPALGWALVIGVVAIAGLPPLGIFMSEFLVVSSTFARHPLLAMPLVFGILLAFGA 426 Query: 426 LILRLTSLAFGEPRGNAAPADASYLPMFAHFALVLTAGIYLPGPLVVWFQHVAHLLG 482 L+LRLT +AFGEPRG+ APA+ASY+PM++H ALV AGIYLP PLV WFQHVA LLG Sbjct: 427 LLLRLTGVAFGEPRGSTAPAEASYIPMYSHLALVFAAGIYLPPPLVTWFQHVASLLG 483 >ref|YP_484884.1| hydrogenase 4 subunit F [Rhodopseudomonas palustris HaA2] gb|ABD05973.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] Length = 483 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/477 (82%), Positives = 430/477 (90%) Query: 6 DAVTWVLLIPITAAAVLAALPGYRLTAGLNIVASLGTLLAALSLLVVERPQPGQYLLIDD 65 D V VLLIP+ AA VLA LPGYRLTA LN+VASLG+ L A SLLV+ RP PG Y+L+DD Sbjct: 7 DPVVGVLLIPVCAAIVLALLPGYRLTARLNVVASLGSFLCAASLLVLPRPLPGPYILVDD 66 Query: 66 LNIVFIVLNTFVGFTTSVFSASYIAHELETGRLTPGYLRFYHAMYQVMMFGMNLAFVSNN 125 LNIVFIVLNTFVGFTTS+FSASYIAHELETG+LTP YLRFYHAMYQ+MMFGMNLAF+SNN Sbjct: 67 LNIVFIVLNTFVGFTTSLFSASYIAHELETGKLTPTYLRFYHAMYQIMMFGMNLAFMSNN 126 Query: 126 IGLIWVAVEVATLTTVLMVGIYRTHAALEAAWKYFILGSVGIALALFGTILVYMAALPVV 185 IGL+WVAVE+ATLTTVLMVGIYR+ AALEAAWKYFILGSVGIALALFGTILVYMAA PVV Sbjct: 127 IGLMWVAVELATLTTVLMVGIYRSPAALEAAWKYFILGSVGIALALFGTILVYMAARPVV 186 Query: 186 GEGQDAMVWTVLISRAATFDPALLNVAFIFLLLGYGTKVGLAPLHAWLPDAHAEGPTPIS 245 GEGQD M+WTVL++RAA FD LLNVAF+FL LGYGTKVGLAPLHAWLPDAHAEGPTPIS Sbjct: 187 GEGQDGMIWTVLVARAAGFDAPLLNVAFVFLFLGYGTKVGLAPLHAWLPDAHAEGPTPIS 246 Query: 246 AVLSGLLLNVALYAVLRFKILLAANPDAISPGPLMVTMGLTSLLFAAFMLYRRRDIKRLF 305 AVLSGLLLNVALYA+LRFK+LLAAN DA+ PG LM+ MGL SLLFAAFMLYRRRDIKRLF Sbjct: 247 AVLSGLLLNVALYALLRFKMLLAANGDAMPPGVLMIVMGLASLLFAAFMLYRRRDIKRLF 306 Query: 306 AYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKSGIFYAVGHIAQVKGTQRIANIR 365 AYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKS IF+AVGHI QVKGTQ +A IR Sbjct: 307 AYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKSAIFFAVGHITQVKGTQSLAKIR 366 Query: 366 GLTESHPALGWSLVIGVVAIAGLPPLGIFMSEFLIVSSTFARQPLLAIPLVFGLLLAFGA 425 G+TE+HP LGW LV+GV AIAGLPPLGIFMSEFL+VSSTFAR P LA+ LVFG+L+AFGA Sbjct: 367 GITETHPVLGWGLVVGVAAIAGLPPLGIFMSEFLLVSSTFARAPWLALLLVFGILVAFGA 426 Query: 426 LILRLTSLAFGEPRGNAAPADASYLPMFAHFALVLTAGIYLPGPLVVWFQHVAHLLG 482 L+LRLT +AFG PRG+ P ASY+PMFAH ALVL AG+YLP P+V WFQHVA LLG Sbjct: 427 LMLRLTGIAFGRPRGSRQPVQASYVPMFAHLALVLIAGVYLPAPVVAWFQHVAKLLG 483 >ref|YP_570974.1| hydrogenase 4 subunit F [Rhodopseudomonas palustris BisB5] gb|ABE41073.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] Length = 483 Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/477 (83%), Positives = 434/477 (90%) Query: 6 DAVTWVLLIPITAAAVLAALPGYRLTAGLNIVASLGTLLAALSLLVVERPQPGQYLLIDD 65 D V VLLIP+ AAAVLA LPGY+LTA LN++ASLG+L+ A SLLV+ RP PG Y+L+DD Sbjct: 7 DPVVGVLLIPVCAAAVLAVLPGYKLTAQLNVLASLGSLVCAASLLVLPRPAPGPYILVDD 66 Query: 66 LNIVFIVLNTFVGFTTSVFSASYIAHELETGRLTPGYLRFYHAMYQVMMFGMNLAFVSNN 125 LNIVFIVLNTFVGFTTS+FSASYIAHELETG+LTP YLRFYHAMYQ+MMFGMNLAFVSNN Sbjct: 67 LNIVFIVLNTFVGFTTSLFSASYIAHELETGKLTPTYLRFYHAMYQIMMFGMNLAFVSNN 126 Query: 126 IGLIWVAVEVATLTTVLMVGIYRTHAALEAAWKYFILGSVGIALALFGTILVYMAALPVV 185 IGL+WVAVE+ATLTTVLMVGIYRT AALEAAWKYFILGSVGIALALFGTILVYMAA PVV Sbjct: 127 IGLMWVAVELATLTTVLMVGIYRTPAALEAAWKYFILGSVGIALALFGTILVYMAARPVV 186 Query: 186 GEGQDAMVWTVLISRAATFDPALLNVAFIFLLLGYGTKVGLAPLHAWLPDAHAEGPTPIS 245 GEGQD M+WTVL+SRAA FD LLNVAF+FL LGYGTKVGLAPLHAWLPDAHAEGPTPIS Sbjct: 187 GEGQDGMIWTVLVSRAAGFDAPLLNVAFVFLFLGYGTKVGLAPLHAWLPDAHAEGPTPIS 246 Query: 246 AVLSGLLLNVALYAVLRFKILLAANPDAISPGPLMVTMGLTSLLFAAFMLYRRRDIKRLF 305 AVLSGLLLNVALYA+LRFK+LLAAN + + PG LM+ MGL SLLFAAFMLYRRRDIKRLF Sbjct: 247 AVLSGLLLNVALYALLRFKVLLAANAETMPPGILMIVMGLASLLFAAFMLYRRRDIKRLF 306 Query: 306 AYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKSGIFYAVGHIAQVKGTQRIANIR 365 AYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKS IFYAVGHI QVKGTQ ++ IR Sbjct: 307 AYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKSAIFYAVGHITQVKGTQSLSKIR 366 Query: 366 GLTESHPALGWSLVIGVVAIAGLPPLGIFMSEFLIVSSTFARQPLLAIPLVFGLLLAFGA 425 G+TESHP LGW LV+GVVAIAGLPPLGIFMSEFL+VSSTFAR PLLA+ LVFGLL+AFGA Sbjct: 367 GITESHPVLGWGLVVGVVAIAGLPPLGIFMSEFLLVSSTFARSPLLALLLVFGLLVAFGA 426 Query: 426 LILRLTSLAFGEPRGNAAPADASYLPMFAHFALVLTAGIYLPGPLVVWFQHVAHLLG 482 L+LRLT +AFGEPRG+ P ASY+PMFAH ALVL AG+YLP P+V WFQHVA LLG Sbjct: 427 LMLRLTGIAFGEPRGSREPVQASYVPMFAHLALVLIAGVYLPAPVVAWFQHVAKLLG 483 >ref|YP_779891.1| hydrogenase 4 subunit F [Rhodopseudomonas palustris BisA53] gb|ABJ04911.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] Length = 483 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/480 (83%), Positives = 442/480 (92%) Query: 3 AASDAVTWVLLIPITAAAVLAALPGYRLTAGLNIVASLGTLLAALSLLVVERPQPGQYLL 62 AA + V V+LIPI AAA+LAALPGYRLTA LN+VA L T ++A++LL++ RP PG Y+L Sbjct: 4 AAFNPVLAVVLIPIFAAALLAALPGYRLTARLNVVACLATFVSAVALLILPRPAPGPYVL 63 Query: 63 IDDLNIVFIVLNTFVGFTTSVFSASYIAHELETGRLTPGYLRFYHAMYQVMMFGMNLAFV 122 +DDLNIVFIVLN+FVG TTS+FSASYIAHELETGRLTP YLRFYHAMYQ MMFGMNLAF+ Sbjct: 64 VDDLNIVFIVLNSFVGLTTSLFSASYIAHELETGRLTPAYLRFYHAMYQTMMFGMNLAFM 123 Query: 123 SNNIGLIWVAVEVATLTTVLMVGIYRTHAALEAAWKYFILGSVGIALALFGTILVYMAAL 182 SNNIGL+WVAVEVATLTTVLMVGIYRT AALEAAWKYFILGSVGIA ALFGTILVYMAA Sbjct: 124 SNNIGLMWVAVEVATLTTVLMVGIYRTEAALEAAWKYFILGSVGIAFALFGTILVYMAAT 183 Query: 183 PVVGEGQDAMVWTVLISRAATFDPALLNVAFIFLLLGYGTKVGLAPLHAWLPDAHAEGPT 242 PV+GEGQDAM+WT+LI RA+ FDPALLNVAF+FL LGYGTKVGLAPLHAWLPDAHAEGPT Sbjct: 184 PVIGEGQDAMIWTLLIERASKFDPALLNVAFVFLFLGYGTKVGLAPLHAWLPDAHAEGPT 243 Query: 243 PISAVLSGLLLNVALYAVLRFKILLAANPDAISPGPLMVTMGLTSLLFAAFMLYRRRDIK 302 PISAVLSGLLLNVALYA+LRFK+L+AANP+A++PG LMVTMGL SLLFAAFMLY+RRDIK Sbjct: 244 PISAVLSGLLLNVALYALLRFKMLMAANPEAMAPGTLMVTMGLASLLFAAFMLYKRRDIK 303 Query: 303 RLFAYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKSGIFYAVGHIAQVKGTQRIA 362 RLFAYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKS IF+AVGH+AQ+KGTQ IA Sbjct: 304 RLFAYSSIEHMGIIVFAFGMGGPLANFAGLLHMVMHSLTKSAIFFAVGHVAQIKGTQNIA 363 Query: 363 NIRGLTESHPALGWSLVIGVVAIAGLPPLGIFMSEFLIVSSTFARQPLLAIPLVFGLLLA 422 +IRGLTESHPALGW LV GV AIAGLPPLGIFMSEFL+VSSTFARQPLLA+ LVFGLL+A Sbjct: 364 DIRGLTESHPALGWGLVAGVAAIAGLPPLGIFMSEFLVVSSTFARQPLLALLLVFGLLIA 423 Query: 423 FGALILRLTSLAFGEPRGNAAPADASYLPMFAHFALVLTAGIYLPGPLVVWFQHVAHLLG 482 FGAL LRLT +AFGEPRG+ PA AS++PMFAH ALVL AG+YLP P+V+WFQHVA LLG Sbjct: 424 FGALTLRLTGIAFGEPRGSTQPAQASHVPMFAHLALVLVAGVYLPAPIVIWFQHVAKLLG 483