BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0050.p (348 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004610701.1| NADH-ubiquinone oxidoreductase chain 49kDa [... 493 e-137 ref|NP_772983.1| hydrogenlyase component [Bradyrhizobium japonic... 486 e-135 ref|YP_484885.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rh... 469 e-130 ref|YP_530822.1| NADH-ubiquinone oxidoreductase subunit 49kDa [R... 466 e-129 ref|YP_001833575.1| NADH dehydrogenase (quinone) [Beijerinckia i... 464 e-128 >ref|YP_004610701.1| NADH-ubiquinone oxidoreductase chain 49kDa [Mesorhizobium opportunistum WSM2075] gb|AEH86607.1| NADH-ubiquinone oxidoreductase chain 49kDa [Mesorhizobium opportunistum WSM2075] Length = 505 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 249/343 (72%), Positives = 282/343 (82%), Gaps = 1/343 (0%) Query: 7 PGISALPRAEKPVVRLEQRLGYTHKGVEGLMTGSTIEQAARLAGRVSGDSTVAYGLAFAQ 66 PG + + VVRLE+RLGY HKG+EGLM GS I+ AA+LAGR SGDSTVAY LAFA+ Sbjct: 163 PGHFRFTASGETVVRLEERLGYAHKGIEGLMAGSDIDHAAKLAGRTSGDSTVAYSLAFAR 222 Query: 67 AVEAAQRIAVPPRALLLRALMAELERLANHLGDIGAICNDASFALMQAHCAVLRESVLRA 126 AVEAA + VPPRA+ LRALMAELERLANHLGDIGAICNDA+FALM AHC VLRE VLRA Sbjct: 223 AVEAALGVEVPPRAIWLRALMAELERLANHLGDIGAICNDAAFALMHAHCGVLRERVLRA 282 Query: 127 ADAAFGHRLMRDLVVPGGVARDIAGDGADAIRAVLDRIRRHFPALVELYDNTASLQDRTV 186 +DAAFGHRLMRD +VPGGVA +++ DG A+ +++ IR+ FPALV+LYDNTASLQDRTV Sbjct: 283 SDAAFGHRLMRDRIVPGGVATNLSDDGTTAVWSLIAEIRQRFPALVDLYDNTASLQDRTV 342 Query: 187 STGIVPPALAKQFAAGGYVGRASGRDHDARRRPGYLPYDGLRFEVPVLGDGDVNARVWIR 246 +TG + LA+Q+ AGGYVGRASGRD DARR Y PYD L F+VP+L +GDVNARVWIR Sbjct: 343 ATGRLKVELARQYRAGGYVGRASGRDFDARRSLAYPPYDTLNFDVPLLQEGDVNARVWIR 402 Query: 247 IREVEQSLALAYQILIGLEAGPVKVPLHNTAEPCEGMALVEGFRGDILAWLRLNGD-RIE 305 IREVEQSL+L QIL L GP++V + T P EGMALVEGFRGDILAWLR+ IE Sbjct: 403 IREVEQSLSLVEQILRQLPDGPIRVDVSRTGGPHEGMALVEGFRGDILAWLRIGKTGLIE 462 Query: 306 RCHLRDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYSGQDL 348 RCHLRDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYSG DL Sbjct: 463 RCHLRDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYSGHDL 505 >ref|NP_772983.1| hydrogenlyase component [Bradyrhizobium japonicum USDA 110] dbj|BAC51608.1| blr6343 [Bradyrhizobium japonicum USDA 110] Length = 503 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 241/342 (70%), Positives = 274/342 (80%) Query: 7 PGISALPRAEKPVVRLEQRLGYTHKGVEGLMTGSTIEQAARLAGRVSGDSTVAYGLAFAQ 66 PG + + V RLEQRLGYTHKG+EGLMTG+ +E+A +LAGRVSGDSTVAY AF++ Sbjct: 162 PGHFRFTASGETVARLEQRLGYTHKGIEGLMTGANLERAVQLAGRVSGDSTVAYAFAFSR 221 Query: 67 AVEAAQRIAVPPRALLLRALMAELERLANHLGDIGAICNDASFALMQAHCAVLRESVLRA 126 A EAA ++ VP RA LRAL+AELERLANHLGDIGAICNDASF LM A C VLRES+LRA Sbjct: 222 AAEAALQLVVPDRAAWLRALLAELERLANHLGDIGAICNDASFTLMHALCGVLRESILRA 281 Query: 127 ADAAFGHRLMRDLVVPGGVARDIAGDGADAIRAVLDRIRRHFPALVELYDNTASLQDRTV 186 +D AFGHRLMRD++VPGGV RD+ +G + IR L IR FPALVELYDNTASLQDRTV Sbjct: 282 SDTAFGHRLMRDIIVPGGVTRDLTEEGREIIRTTLHTIRLRFPALVELYDNTASLQDRTV 341 Query: 187 STGIVPPALAKQFAAGGYVGRASGRDHDARRRPGYLPYDGLRFEVPVLGDGDVNARVWIR 246 TG++ ALA+Q+A GGYVGRASGR DARR Y PYD LRF+VPVL +GDVNARVWIR Sbjct: 342 DTGVLKAALARQYAVGGYVGRASGRSFDARRTLVYAPYDALRFDVPVLNEGDVNARVWIR 401 Query: 247 IREVEQSLALAYQILIGLEAGPVKVPLHNTAEPCEGMALVEGFRGDILAWLRLNGDRIER 306 +REVEQSL L QIL L GP+ + E EGMA+VEGFRGD+L WLRL ++ER Sbjct: 402 VREVEQSLLLIDQILDRLPDGPLGTHAGHRREAREGMAIVEGFRGDVLVWLRLRDGKVER 461 Query: 307 CHLRDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYSGQDL 348 CHLRDPSWFQWPLLEAAIEGNI+ADFPLCNKSFNCSYSG DL Sbjct: 462 CHLRDPSWFQWPLLEAAIEGNIIADFPLCNKSFNCSYSGHDL 503 >ref|YP_484885.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas palustris HaA2] gb|ABD05974.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas palustris HaA2] Length = 503 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 237/343 (69%), Positives = 273/343 (79%) Query: 6 SPGISALPRAEKPVVRLEQRLGYTHKGVEGLMTGSTIEQAARLAGRVSGDSTVAYGLAFA 65 PG + + VVRLEQRLGY HKG++GL+ G+ + AARLAGRVSGDSTVAY LAF+ Sbjct: 161 EPGHFRFTVSGETVVRLEQRLGYVHKGIDGLIAGADLASAARLAGRVSGDSTVAYALAFS 220 Query: 66 QAVEAAQRIAVPPRALLLRALMAELERLANHLGDIGAICNDASFALMQAHCAVLRESVLR 125 +AVEAA I VP RA+ LRAL+AELERLANHLGDIGA+CNDA+FA+M A VLRE VLR Sbjct: 221 RAVEAAAEIVVPARAVWLRALVAELERLANHLGDIGAVCNDAAFAIMLAQFGVLREHVLR 280 Query: 126 AADAAFGHRLMRDLVVPGGVARDIAGDGADAIRAVLDRIRRHFPALVELYDNTASLQDRT 185 AADAAFGHRLMRD+V+PGGVARD+ +G A R L +R PAL+ELYD+TASLQDRT Sbjct: 281 AADAAFGHRLMRDVVMPGGVARDLDDNGKAAFRDALAAVRAKLPALIELYDSTASLQDRT 340 Query: 186 VSTGIVPPALAKQFAAGGYVGRASGRDHDARRRPGYLPYDGLRFEVPVLGDGDVNARVWI 245 VSTGI+ PALA Q+AAGG+VGRASGR DARR Y PY LRF+VPVL +GDV+AR+WI Sbjct: 341 VSTGILRPALADQYAAGGFVGRASGRGFDARRTLAYAPYHQLRFDVPVLTEGDVDARIWI 400 Query: 246 RIREVEQSLALAYQILIGLEAGPVKVPLHNTAEPCEGMALVEGFRGDILAWLRLNGDRIE 305 RIREVEQSL+L QIL L G ++V + CEG+AL+EGFRGDIL WLRL + Sbjct: 401 RIREVEQSLSLVDQILDRLPRGEIRVAPELPDQACEGLALIEGFRGDILVWLRLQDGVVA 460 Query: 306 RCHLRDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYSGQDL 348 RCHLRDPSWFQWPLLEA IEGNI+ADFPLCNKSFNCSYSG DL Sbjct: 461 RCHLRDPSWFQWPLLEAVIEGNIIADFPLCNKSFNCSYSGVDL 503 >ref|YP_530822.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Rhodopseudomonas palustris BisB18] gb|ABD86503.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas palustris BisB18] Length = 502 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/342 (68%), Positives = 269/342 (78%) Query: 7 PGISALPRAEKPVVRLEQRLGYTHKGVEGLMTGSTIEQAARLAGRVSGDSTVAYGLAFAQ 66 PG + + VVRLEQRLGY HKG+EGLM G++++Q A+LAGRVSGDSTVAY A+++ Sbjct: 161 PGHFRFTASGETVVRLEQRLGYVHKGIEGLMGGASLQQGAKLAGRVSGDSTVAYSFAYSR 220 Query: 67 AVEAAQRIAVPPRALLLRALMAELERLANHLGDIGAICNDASFALMQAHCAVLRESVLRA 126 A EAA + VP RA+ LRALMAELERLANHLGDIGAICNDA+FALM AHC VLRE+VLRA Sbjct: 221 AAEAALELKVPERAVWLRALMAELERLANHLGDIGAICNDAAFALMLAHCGVLRENVLRA 280 Query: 127 ADAAFGHRLMRDLVVPGGVARDIAGDGADAIRAVLDRIRRHFPALVELYDNTASLQDRTV 186 A AFGHRLMRDL+VPGGV D++ DG AI A L IR FPAL+ELYD+TASLQDRTV Sbjct: 281 AAIAFGHRLMRDLIVPGGVRGDLSVDGLKAIEAALVSIRHQFPALIELYDDTASLQDRTV 340 Query: 187 STGIVPPALAKQFAAGGYVGRASGRDHDARRRPGYLPYDGLRFEVPVLGDGDVNARVWIR 246 TG+V L +Q+ AGG+VGR SGR D RR+ Y PY LRF+VPVL +GDVNAR+W+R Sbjct: 341 GTGVVSSELVEQYGAGGFVGRGSGRAFDTRRKLCYPPYGQLRFDVPVLPEGDVNARIWVR 400 Query: 247 IREVEQSLALAYQILIGLEAGPVKVPLHNTAEPCEGMALVEGFRGDILAWLRLNGDRIER 306 IREVEQS+A+ QIL L G + + AE EG+ LVEGFRGD+L WLRL I R Sbjct: 401 IREVEQSMAMIDQILDKLPGGELLTSVPAIAEDREGLGLVEGFRGDVLVWLRLRDGVITR 460 Query: 307 CHLRDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYSGQDL 348 CHLRDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYSG DL Sbjct: 461 CHLRDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYSGPDL 502 >ref|YP_001833575.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB96086.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica ATCC 9039] Length = 492 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 242/344 (70%), Positives = 272/344 (79%), Gaps = 2/344 (0%) Query: 7 PGISALPRAEKPVVRLEQRLGYTHKGVEGLMTGSTIEQAARLAGRVSGDSTVAYGLAFAQ 66 PG A + VVRLE+RLGYTHKG+E LM G++++QAARLAGR SGDSTVAY AFA Sbjct: 149 PGHFRFNAAGETVVRLEERLGYTHKGIESLMAGASLDQAARLAGRTSGDSTVAYAYAFAL 208 Query: 67 AVEAAQRIAVPPRALLLRALMAELERLANHLGDIGAICNDASFALMQAHCAVLRESVLRA 126 AVEAA I + RA+ LRALMAELERLANHLGDIGAICNDA+FALM AHC VLRE VLR Sbjct: 209 AVEAALGIEISARAIYLRALMAELERLANHLGDIGAICNDAAFALMLAHCGVLRERVLRV 268 Query: 127 ADAAFGHRLMRDLVVPGGVARDIAGDGADAIRAVLDRIRRHFPALVELYDNTASLQDRTV 186 A AFGHRLM D ++PGGV+ D+A G IR +L IR FPALVELYD TASLQDRTV Sbjct: 269 AAKAFGHRLMMDCIIPGGVSVDLAPAGVSDIRHLLATIRGVFPALVELYDETASLQDRTV 328 Query: 187 STGIVPPALAKQFAAGGYVGRASGRDHDARRRPGYLPYDGLRFEVPVLGDGDVNARVWIR 246 TGIVPP+LA+QF AGGY+GRASGR D RR Y PYD L F+VPVL +GDVNARVWIR Sbjct: 329 GTGIVPPSLARQFGAGGYIGRASGRAFDTRRHLAYPPYDTLTFDVPVLNEGDVNARVWIR 388 Query: 247 IREVEQSLALAYQILIGLEA-GPVKVPLHNTAEPCEGMALVEGFRGDILAWLRLNGD-RI 304 IREVEQSL+L QIL L A G ++ + E EG+ALVEGFRGD+L +RL+G+ I Sbjct: 389 IREVEQSLSLIDQILDRLPADGLLRTEVGGAGERREGLALVEGFRGDVLVSVRLSGEGSI 448 Query: 305 ERCHLRDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYSGQDL 348 ERCHLRDPSWFQWPLLEAAI+GNIVADFPLCNKSFNCSYSG DL Sbjct: 449 ERCHLRDPSWFQWPLLEAAIKGNIVADFPLCNKSFNCSYSGHDL 492