BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0042.p         (166 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08629456.1| hypothetical protein CSIRO_2545 [Bradyrhizobi...   276   8e-73
ref|NP_770606.1| hypothetical protein bll3966 [Bradyrhizobium ja...   269   1e-70
ref|YP_781312.1| hypothetical protein RPE_2393 [Rhodopseudomonas...   263   5e-69
ref|YP_577793.1| hypothetical protein Nham_2551 [Nitrobacter ham...   263   7e-69
ref|ZP_01046636.1| hypothetical protein NB311A_18446 [Nitrobacte...   259   6e-68

>ref|ZP_08629456.1| hypothetical protein CSIRO_2545 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP07949.1| hypothetical protein CSIRO_2545 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 152

 Score =  276 bits (705), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 131/147 (89%), Positives = 143/147 (97%)

Query: 8   TRIYVDADACPVKDEIYRVAIRHGVPVSVVAGNFIRVPQDPLIERIAAGSGMDAADDWIA 67
           TRIYVDADACPVKDEIYRVA RHG+PVSVVAGNFIRVPQ PLIERIAAGSGMDAADDWIA
Sbjct: 2   TRIYVDADACPVKDEIYRVAERHGLPVSVVAGNFIRVPQHPLIERIAAGSGMDAADDWIA 61

Query: 68  ERAREGDIVITADIPLASRCVKAGADVIAPNGKPFTEQSIGMTLAVRNLMTDLRSSGEIT 127
           ERA++GDIV+TAD+PLA+RCVK+GADVIAPNGKPF+E+SIGMTLAVRNLMTDLRSSGE+T
Sbjct: 62  ERAQKGDIVVTADVPLAARCVKSGADVIAPNGKPFSEESIGMTLAVRNLMTDLRSSGEVT 121

Query: 128 GGPKSYSPRDRSTFLSTLDQTIRRIQR 154
           GGP+S+SPRDRS FLS LDQTIRRIQR
Sbjct: 122 GGPRSFSPRDRSAFLSALDQTIRRIQR 148


>ref|NP_770606.1| hypothetical protein bll3966 [Bradyrhizobium japonicum USDA 110]
 sp|Q89N76.1|Y3966_BRAJA RecName: Full=UPF0178 protein bll3966
 dbj|BAC49231.1| bll3966 [Bradyrhizobium japonicum USDA 110]
          Length = 167

 Score =  269 bits (688), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/165 (86%), Positives = 155/165 (93%), Gaps = 2/165 (1%)

Query: 1   MTETPAPTRIYVDADACPVKDEIYRVAIRHGVPVSVVAGNFIRVPQDPLIERIAAGSGMD 60
           MT+TP  TRIYVDADACPVKDEIYRVA+RH VPVSVVAGNFIRVPQDPLIERIAAG+GMD
Sbjct: 1   MTDTP--TRIYVDADACPVKDEIYRVALRHSVPVSVVAGNFIRVPQDPLIERIAAGAGMD 58

Query: 61  AADDWIAERAREGDIVITADIPLASRCVKAGADVIAPNGKPFTEQSIGMTLAVRNLMTDL 120
           AADDWIAERAR GD+V+T+DIPLASRCVKAGADVIAPNGKPFTEQSIGMTLAVRNLMTDL
Sbjct: 59  AADDWIAERARPGDVVVTSDIPLASRCVKAGADVIAPNGKPFTEQSIGMTLAVRNLMTDL 118

Query: 121 RSSGEITGGPKSYSPRDRSTFLSTLDQTIRRIQRRRAEQAPASQQ 165
           RS+GE+TGGP+S++PRDRSTFLS LDQT+RRIQRRR + A  SQ 
Sbjct: 119 RSAGEVTGGPRSFAPRDRSTFLSALDQTLRRIQRRRIDAAATSQN 163


>ref|YP_781312.1| hypothetical protein RPE_2393 [Rhodopseudomonas palustris BisA53]
 gb|ABJ06332.1| protein of unknown function DUF188 [Rhodopseudomonas palustris
           BisA53]
          Length = 185

 Score =  263 bits (673), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 126/153 (82%), Positives = 139/153 (90%)

Query: 7   PTRIYVDADACPVKDEIYRVAIRHGVPVSVVAGNFIRVPQDPLIERIAAGSGMDAADDWI 66
           P RIYVDADACPVKDEIY+VA RH +P+SVVAG FIRVP DP+IERIAAGSGMDAADDWI
Sbjct: 30  PIRIYVDADACPVKDEIYKVAARHRLPISVVAGGFIRVPNDPMIERIAAGSGMDAADDWI 89

Query: 67  AERAREGDIVITADIPLASRCVKAGADVIAPNGKPFTEQSIGMTLAVRNLMTDLRSSGEI 126
           AER    DIVIT+DIPLASRCVK GA V+APNGKPF+E+SIGMTLAVRNLMTDLRS+GEI
Sbjct: 90  AERVSANDIVITSDIPLASRCVKKGAAVLAPNGKPFSEESIGMTLAVRNLMTDLRSAGEI 149

Query: 127 TGGPKSYSPRDRSTFLSTLDQTIRRIQRRRAEQ 159
           TGGP+ +SPRDRSTFLSTLD TIRR+QR RA+Q
Sbjct: 150 TGGPRGFSPRDRSTFLSTLDTTIRRLQRARADQ 182


>ref|YP_577793.1| hypothetical protein Nham_2551 [Nitrobacter hamburgensis X14]
 gb|ABE63333.1| protein of unknown function DUF188 [Nitrobacter hamburgensis X14]
          Length = 166

 Score =  263 bits (671), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 128/146 (87%), Positives = 136/146 (93%)

Query: 9   RIYVDADACPVKDEIYRVAIRHGVPVSVVAGNFIRVPQDPLIERIAAGSGMDAADDWIAE 68
           RIYVDADACPVKDEIYRVA RHG+PVSVVAG +IRVP DPLIERIAAG GMDAADDWIAE
Sbjct: 14  RIYVDADACPVKDEIYRVAARHGLPVSVVAGGYIRVPDDPLIERIAAGPGMDAADDWIAE 73

Query: 69  RAREGDIVITADIPLASRCVKAGADVIAPNGKPFTEQSIGMTLAVRNLMTDLRSSGEITG 128
           RA + D+VITADIPLASRCVKAGA VIAPNGKPFTEQSIGMTLAVRNLMTDLR+SGE+TG
Sbjct: 74  RAGKTDMVITADIPLASRCVKAGASVIAPNGKPFTEQSIGMTLAVRNLMTDLRASGEVTG 133

Query: 129 GPKSYSPRDRSTFLSTLDQTIRRIQR 154
           GP+S+ PRDRS FLS LDQTIRRIQR
Sbjct: 134 GPRSFQPRDRSAFLSALDQTIRRIQR 159


>ref|ZP_01046636.1| hypothetical protein NB311A_18446 [Nitrobacter sp. Nb-311A]
 gb|EAQ35472.1| hypothetical protein NB311A_18446 [Nitrobacter sp. Nb-311A]
          Length = 157

 Score =  259 bits (663), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 128/151 (84%), Positives = 137/151 (90%)

Query: 9   RIYVDADACPVKDEIYRVAIRHGVPVSVVAGNFIRVPQDPLIERIAAGSGMDAADDWIAE 68
           RIYVDADACPVKDEIYRVAIRH VPV VVAG +IR+P+D LIERIAAG GMDAADDWIAE
Sbjct: 5   RIYVDADACPVKDEIYRVAIRHCVPVIVVAGTYIRIPEDQLIERIAAGPGMDAADDWIAE 64

Query: 69  RAREGDIVITADIPLASRCVKAGADVIAPNGKPFTEQSIGMTLAVRNLMTDLRSSGEITG 128
           RA + DIVITADIPLASRCVKAGA VIAPNGKPFTEQSIGMTLAVRNLMTDLR+SGE+TG
Sbjct: 65  RAGKTDIVITADIPLASRCVKAGASVIAPNGKPFTEQSIGMTLAVRNLMTDLRASGEVTG 124

Query: 129 GPKSYSPRDRSTFLSTLDQTIRRIQRRRAEQ 159
           GP+S+ PRDRS FLS LD+ IRRIQR RA Q
Sbjct: 125 GPRSFQPRDRSAFLSELDRVIRRIQRARATQ 155