BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0041.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_569391.1| hypothetical protein RPD_2255 [Rhodopseudomonas... 362 4e-98 ref|YP_004109633.1| hypothetical protein Rpdx1_3329 [Rhodopseudo... 361 8e-98 ref|NP_947537.1| hypothetical protein RPA2192 [Rhodopseudomonas ... 360 2e-97 ref|YP_001239588.1| hypothetical protein BBta_3593 [Bradyrhizobi... 356 2e-96 ref|YP_001991475.1| hypothetical protein Rpal_2486 [Rhodopseudom... 356 2e-96 >ref|YP_569391.1| hypothetical protein RPD_2255 [Rhodopseudomonas palustris BisB5] gb|ABE39490.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 266 Score = 362 bits (928), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 170/259 (65%), Positives = 202/259 (77%), Gaps = 1/259 (0%) Query: 10 YRVSAYNTSKLSENKIHDDTVARKFGFSGGLVPGVDVMAYMMHLPVEKWGRDFLARGLIE 69 YRVSAYNT+K SENK+HDDTVA++FGFSGGLVPGV+VMAYMMHLP+ +WGR+FL RGLIE Sbjct: 8 YRVSAYNTAKQSENKMHDDTVAQRFGFSGGLVPGVEVMAYMMHLPIARWGREFLERGLIE 67 Query: 70 ARFVKPVYDGEIAELTGQETGNGLTIELHSRGELCATGTASLPTSAPKFVLDDYKQVAAV 129 ARFVKPVYDGE A + G E G L IE+ S LCATG+A+LP AP F L DY + A V Sbjct: 68 ARFVKPVYDGETAVVGGSEQGGALAIEVESGSALCATGSAALPERAPAFDLHDYPETAPV 127 Query: 130 AERKPVSASSYEEGKWLGTIPRDWSGDAAKEYLADIRETDPIYLREGLGHPGLLPRVMNK 189 A R P+ ++ G+WLGT P W G+A + YLA++RE DPI+++ L HPG L R+MN+ Sbjct: 128 ATRPPIGPGAFAVGQWLGTKPVVWGGEALRNYLAEVREADPIFVKNNLVHPGALQRIMNR 187 Query: 190 VLVDNAILGPWIHVGTRMQLLSAGKIGDELTARARVTGNYDKKGHRFVELDALVLGNG-V 248 VLVDN +LGPWIHVG+RMQLL+A D L ARARVT NYDKKGHRFVELDAL++ G Sbjct: 188 VLVDNVVLGPWIHVGSRMQLLAAAHGDDTLAARARVTANYDKKGHRFVELDALIVAGGTT 247 Query: 249 PLAHCWHIAITQPREQAVA 267 P+AHC HIAI QPREQA A Sbjct: 248 PVAHCHHIAIIQPREQAAA 266 >ref|YP_004109633.1| hypothetical protein Rpdx1_3329 [Rhodopseudomonas palustris DX-1] gb|ADU44900.1| hypothetical protein Rpdx1_3329 [Rhodopseudomonas palustris DX-1] Length = 266 Score = 361 bits (926), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 170/259 (65%), Positives = 201/259 (77%), Gaps = 1/259 (0%) Query: 10 YRVSAYNTSKLSENKIHDDTVARKFGFSGGLVPGVDVMAYMMHLPVEKWGRDFLARGLIE 69 +RVSA+NT+K SENK+HDDTVAR+FGFSGGLVPGV+VMAYMMHLPV +WGRDFL RGLIE Sbjct: 8 WRVSAFNTAKQSENKMHDDTVARRFGFSGGLVPGVEVMAYMMHLPVARWGRDFLERGLIE 67 Query: 70 ARFVKPVYDGEIAELTGQETGNGLTIELHSRGELCATGTASLPTSAPKFVLDDYKQVAAV 129 ARFV+PVYDGE A +TG+E G +T+ + SRGELCATGTASLP AP L Y + AA Sbjct: 68 ARFVRPVYDGETATVTGEEQGEAVTLAVESRGELCATGTASLPARAPAVDLSAYPETAAA 127 Query: 130 AERKPVSASSYEEGKWLGTIPRDWSGDAAKEYLADIRETDPIYLREGLGHPGLLPRVMNK 189 A R PV SS+ G+WLGT P W G ++YL +IRETDPIY L HPG L R+MN+ Sbjct: 128 ANRPPVDTSSFPLGQWLGTAPVSWGGAKLRDYLDEIRETDPIYQATDLIHPGTLQRIMNR 187 Query: 190 VLVDNAILGPWIHVGTRMQLLSAGKIGDELTARARVTGNYDKKGHRFVELDALVLGNG-V 248 VLVDN +LGPWIHVG++MQLL+A + D L ARARV NYDKKGHRF E DAL++ NG Sbjct: 188 VLVDNVVLGPWIHVGSKMQLLAAARGHDMLAARARVVANYDKKGHRFAEFDALIVANGDR 247 Query: 249 PLAHCWHIAITQPREQAVA 267 P+AHC H+AI PR+QA A Sbjct: 248 PVAHCHHVAIFAPRQQAAA 266 >ref|NP_947537.1| hypothetical protein RPA2192 [Rhodopseudomonas palustris CGA009] emb|CAE27633.1| hypothetical protein RPA2192 [Rhodopseudomonas palustris CGA009] Length = 266 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 168/259 (64%), Positives = 202/259 (77%), Gaps = 1/259 (0%) Query: 10 YRVSAYNTSKLSENKIHDDTVARKFGFSGGLVPGVDVMAYMMHLPVEKWGRDFLARGLIE 69 +RVSA+NT+K SENK+HDDTVAR+FGF+GGLVPGV+VMAYMMHLPV +WGRDFL RGLIE Sbjct: 8 WRVSAFNTAKQSENKMHDDTVARRFGFTGGLVPGVEVMAYMMHLPVARWGRDFLERGLIE 67 Query: 70 ARFVKPVYDGEIAELTGQETGNGLTIELHSRGELCATGTASLPTSAPKFVLDDYKQVAAV 129 ARFVKPVYDGE A +TG+E G +T+ + SRGELCATG+ASLP AP L Y + AA Sbjct: 68 ARFVKPVYDGETATVTGEEQGEAITLAVESRGELCATGSASLPVRAPAVDLGAYPETAAA 127 Query: 130 AERKPVSASSYEEGKWLGTIPRDWSGDAAKEYLADIRETDPIYLREGLGHPGLLPRVMNK 189 R PV A S+ EG W GT P +W G ++YL +IRETDPIY + L HPG L R+MN+ Sbjct: 128 TNRPPVGAQSFPEGHWFGTAPVNWGGAKLRDYLDEIRETDPIYRSDDLIHPGTLQRIMNR 187 Query: 190 VLVDNAILGPWIHVGTRMQLLSAGKIGDELTARARVTGNYDKKGHRFVELDALVLGNG-V 248 VLVDN +LGPWIHVG++MQLL+A + D LTARA+V NYDKKGHRF E DAL++ NG Sbjct: 188 VLVDNVVLGPWIHVGSKMQLLAAARGDDVLTARAKVVANYDKKGHRFAEFDALIVANGDR 247 Query: 249 PLAHCWHIAITQPREQAVA 267 P+AHC H+AI PR+QA A Sbjct: 248 PVAHCHHVAIFAPRQQAAA 266 >ref|YP_001239588.1| hypothetical protein BBta_3593 [Bradyrhizobium sp. BTAi1] gb|ABQ35682.1| hypothetical protein BBta_3593 [Bradyrhizobium sp. BTAi1] Length = 266 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 166/260 (63%), Positives = 203/260 (78%), Gaps = 1/260 (0%) Query: 9 TYRVSAYNTSKLSENKIHDDTVARKFGFSGGLVPGVDVMAYMMHLPVEKWGRDFLARGLI 68 Y V A+NT+K SENK+HDD VAR+FGF+GGLVPGV+V+AYM+H PV +WGR FL RGLI Sbjct: 7 VYAVEAFNTAKQSENKMHDDAVARRFGFAGGLVPGVEVLAYMLHQPVARWGRAFLERGLI 66 Query: 69 EARFVKPVYDGEIAELTGQETGNGLTIELHSRGELCATGTASLPTSAPKFVLDDYKQVAA 128 EARF+KPVYDGE+AE+ ++ G+G+ +E+ S+G+LCATG+ASLP AP VL +Y+ V Sbjct: 67 EARFIKPVYDGEMAEVRAEQVGDGIGLEVTSQGQLCATGSASLPAVAPDVVLAEYRDVPP 126 Query: 129 VAERKPVSASSYEEGKWLGTIPRDWSGDAAKEYLADIRETDPIYLREGLGHPGLLPRVMN 188 A R PVSA S+ G WLGT PR W G AAK YL +IRE DP+Y + LGHPG+L RVMN Sbjct: 127 AAMRPPVSAESFAVGSWLGTAPRAWPGQAAKLYLDEIRERDPLYANDRLGHPGMLQRVMN 186 Query: 189 KVLVDNAILGPWIHVGTRMQLLSAGKIGDELTARARVTGNYDKKGHRFVELDALVLGNGV 248 ++LVDN +LGPWIHVG+RMQLLS DE+TAR RV NY+KKGHRFVE+DALV+ NG Sbjct: 187 RLLVDNVVLGPWIHVGSRMQLLSVIAETDEITARGRVVANYEKKGHRFVEIDALVVANGT 246 Query: 249 -PLAHCWHIAITQPREQAVA 267 LAHC H+AI QPR QA A Sbjct: 247 RALAHCQHVAIYQPRAQAAA 266 >ref|YP_001991475.1| hypothetical protein Rpal_2486 [Rhodopseudomonas palustris TIE-1] gb|ACF01000.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 266 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 166/259 (64%), Positives = 201/259 (77%), Gaps = 1/259 (0%) Query: 10 YRVSAYNTSKLSENKIHDDTVARKFGFSGGLVPGVDVMAYMMHLPVEKWGRDFLARGLIE 69 +RVSA+NT+K SENK+HDDTVAR+FGF+GGLVPGV+VMAYM+HLPV +WGRDFL RGLIE Sbjct: 8 WRVSAFNTAKQSENKMHDDTVARRFGFTGGLVPGVEVMAYMLHLPVARWGRDFLERGLIE 67 Query: 70 ARFVKPVYDGEIAELTGQETGNGLTIELHSRGELCATGTASLPTSAPKFVLDDYKQVAAV 129 ARFVKPVYDGE A +TG+E G +T+ + SRGELCATG+ASLP+ AP L Y + AA Sbjct: 68 ARFVKPVYDGETATVTGEEQGEAITLAVESRGELCATGSASLPSRAPAVDLVAYPETAAA 127 Query: 130 AERKPVSASSYEEGKWLGTIPRDWSGDAAKEYLADIRETDPIYLREGLGHPGLLPRVMNK 189 R PV S+ EG W GT P W G ++YL +IRET PIY + L HPG L R+MN+ Sbjct: 128 TNRPPVGVQSFPEGHWFGTAPVSWGGAKLRDYLDEIRETGPIYRSDDLIHPGTLQRIMNR 187 Query: 190 VLVDNAILGPWIHVGTRMQLLSAGKIGDELTARARVTGNYDKKGHRFVELDALVLGNG-V 248 VLVDN +LGPWIHVG++MQLL+A + DELTARA+V NYDKKGHRF E DAL++ NG Sbjct: 188 VLVDNVVLGPWIHVGSKMQLLAAARGDDELTARAKVVANYDKKGHRFAEFDALIVANGDR 247 Query: 249 PLAHCWHIAITQPREQAVA 267 P+AHC H+AI PR+QA A Sbjct: 248 PVAHCHHVAIFAPRQQAAA 266