BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0039.p (435 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239590.1| xanthine dehydrogenase, molybdenum binding s... 731 0.0 ref|YP_001205182.1| putative carbon-monoxide dehydrogenase large... 727 0.0 ref|NP_770608.1| carbon monoxide dehydrogenase large chain [Brad... 712 0.0 ref|YP_569393.1| carbon-monoxide dehydrogenase [Rhodopseudomonas... 675 0.0 ref|NP_947539.1| carbon-monoxide dehydrogenase large subunit [Rh... 672 0.0 >ref|YP_001239590.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein [Bradyrhizobium sp. BTAi1] gb|ABQ35684.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein [Bradyrhizobium sp. BTAi1] Length = 791 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/421 (84%), Positives = 383/421 (90%) Query: 1 VVSMEPRVALAHYDKKTERFTLQVPTQGVSGNKAILARLLNVPADKVRILTGNVGGSFGM 60 VVSMEPRVALA +D KTERFTLQVPTQGVSGNKA LA++LNV DKVRILT NVGGSFGM Sbjct: 213 VVSMEPRVALAAFDGKTERFTLQVPTQGVSGNKATLAKILNVAPDKVRILTTNVGGSFGM 272 Query: 61 KNLNYPEYTCIAHAARELGRPVKWLDERSTSFLSDSQGRAQLIHAELALDADGKFLAVRL 120 KN++YPEY CI HAARELGRPVKW DER+T+FLSDSQGR Q+IH ELALDADGKFLAVRL Sbjct: 273 KNVSYPEYVCILHAARELGRPVKWRDERTTAFLSDSQGRDQIIHGELALDADGKFLAVRL 332 Query: 121 SGYGNLGAYITGVAPGPLSLNTGKNLASVYRTPLLGVDIKTVLTNTTLMGAYRGAGRPEA 180 SGYGNLGAYI GVAP PLSLNTGKNLASVY+TPLLGVDIKTVLTN TLMGAYRGAGRPEA Sbjct: 333 SGYGNLGAYIMGVAPLPLSLNTGKNLASVYKTPLLGVDIKTVLTNVTLMGAYRGAGRPEA 392 Query: 181 NYYMERLIDAAADEMGINRFTLRKRNFIKPSQLPFPAASGVTYDSGDFAAVFQKALEISD 240 NY+MERLID AA EMGI+R T+RKRNFIKPSQ+PFPAASGVTYDSGDFAAVF+KAL +SD Sbjct: 393 NYFMERLIDTAAREMGIDRLTIRKRNFIKPSQMPFPAASGVTYDSGDFAAVFEKALAVSD 452 Query: 241 YDNFAKRKKESKKSGKLRGIAVGSYLEVTAPPSGELGKISFEPDGSVKLTTGTLDYGQGH 300 Y FAKRK+ES+K+GKLRGIAVGSYLEVTAPPSGELGKI+F+ DG V LTTGTLDYGQGH Sbjct: 453 YAGFAKRKRESRKNGKLRGIAVGSYLEVTAPPSGELGKITFDADGGVTLTTGTLDYGQGH 512 Query: 301 ATPFAQVLSDQLGVPFEKITLEQGDSDLVRFGNGTGGSRSITATGQAIVEASALVVEKGK 360 ATPFAQVLS QLGVPFEKI LEQ DSDLVRFGNGTGGSRSITATGQAIVE+S LV+ KGK Sbjct: 513 ATPFAQVLSAQLGVPFEKIRLEQSDSDLVRFGNGTGGSRSITATGQAIVESSQLVIAKGK 572 Query: 361 KAAAHMLEASEADIEFGAGRFTIAGTDRSIGIMELAERMRAGKMPEGTPETLDVDHATKE 420 +AAAH+LEASEADIEF G+FTIAGTDRSI IMELA RMR GKMPEG P +LDVDH + Sbjct: 573 QAAAHLLEASEADIEFAGGQFTIAGTDRSIDIMELARRMREGKMPEGVPASLDVDHNSTA 632 Query: 421 T 421 T Sbjct: 633 T 633 >ref|YP_001205182.1| putative carbon-monoxide dehydrogenase large subunit [Bradyrhizobium sp. ORS 278] emb|CAL76947.1| putative carbon-monoxide dehydrogenase large subunit [Bradyrhizobium sp. ORS 278] Length = 791 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/421 (83%), Positives = 383/421 (90%) Query: 1 VVSMEPRVALAHYDKKTERFTLQVPTQGVSGNKAILARLLNVPADKVRILTGNVGGSFGM 60 VVSMEPRVALA +D KTERFTLQVPTQGVSGNKA LA++LNV +KVRILT NVGGSFGM Sbjct: 213 VVSMEPRVALAAFDGKTERFTLQVPTQGVSGNKATLAKILNVAPEKVRILTTNVGGSFGM 272 Query: 61 KNLNYPEYTCIAHAARELGRPVKWLDERSTSFLSDSQGRAQLIHAELALDADGKFLAVRL 120 KN++YPEY CI HAA+ELGRPVKW DER+T+FLSDSQGR Q+IH ELALDADGKFLAVRL Sbjct: 273 KNVSYPEYICILHAAKELGRPVKWRDERTTAFLSDSQGRDQIIHGELALDADGKFLAVRL 332 Query: 121 SGYGNLGAYITGVAPGPLSLNTGKNLASVYRTPLLGVDIKTVLTNTTLMGAYRGAGRPEA 180 SGYGNLGAYI GVAP PLSLNTGKNLASVY+TPLL VDIKTVLTN TLMGAYRGAGRPEA Sbjct: 333 SGYGNLGAYIMGVAPLPLSLNTGKNLASVYKTPLLSVDIKTVLTNVTLMGAYRGAGRPEA 392 Query: 181 NYYMERLIDAAADEMGINRFTLRKRNFIKPSQLPFPAASGVTYDSGDFAAVFQKALEISD 240 NY+MERLID AA EMGI+R T+RKRNFIKPSQ+PFPAASGVTYDSGDFAAVF+KAL++SD Sbjct: 393 NYFMERLIDTAAREMGIDRLTIRKRNFIKPSQMPFPAASGVTYDSGDFAAVFEKALQVSD 452 Query: 241 YDNFAKRKKESKKSGKLRGIAVGSYLEVTAPPSGELGKISFEPDGSVKLTTGTLDYGQGH 300 Y FAKRK+ES+K GKLRGIAVGSYLEVTAPPSGELGKI+F+ DG V LTTGTLDYGQGH Sbjct: 453 YAGFAKRKRESRKQGKLRGIAVGSYLEVTAPPSGELGKITFDADGGVTLTTGTLDYGQGH 512 Query: 301 ATPFAQVLSDQLGVPFEKITLEQGDSDLVRFGNGTGGSRSITATGQAIVEASALVVEKGK 360 ATPF+QVLS+QLGVPFEKI LEQ DSDLVRFGNGTGGSRSITATGQAIVE+S LV+ KGK Sbjct: 513 ATPFSQVLSEQLGVPFEKIRLEQSDSDLVRFGNGTGGSRSITATGQAIVESSQLVIAKGK 572 Query: 361 KAAAHMLEASEADIEFGAGRFTIAGTDRSIGIMELAERMRAGKMPEGTPETLDVDHATKE 420 +AAAH+LEASEADIEF GRFTIAGTDRSI IMELA RMR GKMP+G P +LDVDH + Sbjct: 573 QAAAHLLEASEADIEFAGGRFTIAGTDRSIDIMELARRMREGKMPDGVPASLDVDHNSTA 632 Query: 421 T 421 T Sbjct: 633 T 633 >ref|NP_770608.1| carbon monoxide dehydrogenase large chain [Bradyrhizobium japonicum USDA 110] dbj|BAC49233.1| carbon monoxide dehydrogenase large chain [Bradyrhizobium japonicum USDA 110] Length = 790 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/419 (81%), Positives = 378/419 (90%) Query: 1 VVSMEPRVALAHYDKKTERFTLQVPTQGVSGNKAILARLLNVPADKVRILTGNVGGSFGM 60 VVSMEPRV LA YDKK ER+TLQVPTQGV+GN+A LA+ L VP +KVRILT NVGGSFGM Sbjct: 213 VVSMEPRVGLASYDKKAERYTLQVPTQGVAGNRANLAKNLKVPNEKVRILTANVGGSFGM 272 Query: 61 KNLNYPEYTCIAHAARELGRPVKWLDERSTSFLSDSQGRAQLIHAELALDADGKFLAVRL 120 KN+NYPEY CI +AA+ LGRPVKWLDERSTSFLSDS GRAQ IHAELALDA+G FLA +L Sbjct: 273 KNINYPEYMCILYAAKALGRPVKWLDERSTSFLSDSHGRAQKIHAELALDAEGHFLAAKL 332 Query: 121 SGYGNLGAYITGVAPGPLSLNTGKNLASVYRTPLLGVDIKTVLTNTTLMGAYRGAGRPEA 180 GYGNLGAYITGVAPGPLSLNTGKN +SVYRTPL+G+DIKTVLTNTTLMGAYRGAGRPEA Sbjct: 333 EGYGNLGAYITGVAPGPLSLNTGKNFSSVYRTPLMGIDIKTVLTNTTLMGAYRGAGRPEA 392 Query: 181 NYYMERLIDAAADEMGINRFTLRKRNFIKPSQLPFPAASGVTYDSGDFAAVFQKALEISD 240 NYYMERLID AADEMGINR T+RKRNFIKP+Q+PFPA+SGVTYDSGDF AVF KALEISD Sbjct: 393 NYYMERLIDRAADEMGINRLTMRKRNFIKPTQMPFPASSGVTYDSGDFQAVFNKALEISD 452 Query: 241 YDNFAKRKKESKKSGKLRGIAVGSYLEVTAPPSGELGKISFEPDGSVKLTTGTLDYGQGH 300 ++NFAKRKKESKK+GKLRGIAVGSYLEVTAPPS ELGKI F+PDGSV+L TGTLDYGQGH Sbjct: 453 HENFAKRKKESKKAGKLRGIAVGSYLEVTAPPSPELGKIVFDPDGSVQLITGTLDYGQGH 512 Query: 301 ATPFAQVLSDQLGVPFEKITLEQGDSDLVRFGNGTGGSRSITATGQAIVEASALVVEKGK 360 ATPFAQVL +QLGVPFE + L QGDSD+V GNGTGGSRSITA+G AIV A+ LV+EKGK Sbjct: 513 ATPFAQVLCEQLGVPFESVKLVQGDSDIVHTGNGTGGSRSITASGMAIVGAAKLVIEKGK 572 Query: 361 KAAAHMLEASEADIEFGAGRFTIAGTDRSIGIMELAERMRAGKMPEGTPETLDVDHATK 419 +AAAHMLEASEADIEF G FTIAGTDRSI IMELA+R+ GK+PEG P++LDVDH ++ Sbjct: 573 RAAAHMLEASEADIEFEGGSFTIAGTDRSIDIMELAKRLHDGKVPEGVPDSLDVDHTSE 631 >ref|YP_569393.1| carbon-monoxide dehydrogenase [Rhodopseudomonas palustris BisB5] gb|ABE39492.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein [Rhodopseudomonas palustris BisB5] Length = 791 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/421 (76%), Positives = 361/421 (85%) Query: 1 VVSMEPRVALAHYDKKTERFTLQVPTQGVSGNKAILARLLNVPADKVRILTGNVGGSFGM 60 VVSMEPR LA YD+ R+T+QVPTQGV+GN+ LA+LL VP DKVR+LTG+VGGSFGM Sbjct: 213 VVSMEPRAGLACYDRNDGRYTIQVPTQGVAGNRNGLAKLLGVPNDKVRLLTGHVGGSFGM 272 Query: 61 KNLNYPEYTCIAHAARELGRPVKWLDERSTSFLSDSQGRAQLIHAELALDADGKFLAVRL 120 KN+NYPEY CI HAA+ LGRPVKW DERST+FLSDS GR Q IHAELALDA GKFLA+R+ Sbjct: 273 KNINYPEYICILHAAKALGRPVKWTDERSTAFLSDSHGRGQQIHAELALDAAGKFLAIRI 332 Query: 121 SGYGNLGAYITGVAPGPLSLNTGKNLASVYRTPLLGVDIKTVLTNTTLMGAYRGAGRPEA 180 SG GNLGAYITGVAP PLSLN GKN+ SVYRTPLL VDIK VLTN TLMGAYRGAGRPEA Sbjct: 333 SGTGNLGAYITGVAPLPLSLNIGKNIGSVYRTPLLSVDIKCVLTNVTLMGAYRGAGRPEA 392 Query: 181 NYYMERLIDAAADEMGINRFTLRKRNFIKPSQLPFPAASGVTYDSGDFAAVFQKALEISD 240 NYY+ERLID AADEM I+R TLRKRNFIKPSQ+PF A SGVTYD GDFA VF ALE++D Sbjct: 393 NYYLERLIDRAADEMSIDRLTLRKRNFIKPSQMPFKACSGVTYDCGDFAGVFAHALELAD 452 Query: 241 YDNFAKRKKESKKSGKLRGIAVGSYLEVTAPPSGELGKISFEPDGSVKLTTGTLDYGQGH 300 Y F+KRKK+S+K G+LRGIAVGSYLEVTAPP+ ELGKI FE DG V+L TGTLDYGQGH Sbjct: 453 YAGFSKRKKDSRKRGRLRGIAVGSYLEVTAPPNSELGKIVFEADGRVRLITGTLDYGQGH 512 Query: 301 ATPFAQVLSDQLGVPFEKITLEQGDSDLVRFGNGTGGSRSITATGQAIVEASALVVEKGK 360 ATPFAQV+S QLGVPFE +TLEQGDSDLV GNGTGGSRSITA+G AIVEA+A V+ KGK Sbjct: 513 ATPFAQVMSAQLGVPFESVTLEQGDSDLVHTGNGTGGSRSITASGMAIVEAAAQVIAKGK 572 Query: 361 KAAAHMLEASEADIEFGAGRFTIAGTDRSIGIMELAERMRAGKMPEGTPETLDVDHATKE 420 AA+H+LE SEADIEF GRFT+AGTDRSIGI+ELA+R+R KMP+G P +LDVDH KE Sbjct: 573 AAASHLLETSEADIEFSGGRFTVAGTDRSIGIIELAQRLRDSKMPDGAPSSLDVDHTVKE 632 Query: 421 T 421 Sbjct: 633 V 633 >ref|NP_947539.1| carbon-monoxide dehydrogenase large subunit [Rhodopseudomonas palustris CGA009] emb|CAE27635.1| possible carbon-monoxide dehydrogenase large subunit [Rhodopseudomonas palustris CGA009] Length = 834 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/418 (77%), Positives = 365/418 (87%) Query: 2 VSMEPRVALAHYDKKTERFTLQVPTQGVSGNKAILARLLNVPADKVRILTGNVGGSFGMK 61 V MEPRV LA YD++ R+T+Q+PTQGVSGN+ LA+LL VP DKVR+LTG VGGSFGMK Sbjct: 257 VPMEPRVGLASYDQQNGRYTIQLPTQGVSGNRNTLAKLLGVPTDKVRVLTGQVGGSFGMK 316 Query: 62 NLNYPEYTCIAHAARELGRPVKWLDERSTSFLSDSQGRAQLIHAELALDADGKFLAVRLS 121 N++YPEY CI HAA+ LGRPVKW DERSTSFLSDSQGR Q I AELALDA G+FLA+RLS Sbjct: 317 NISYPEYICILHAAKTLGRPVKWTDERSTSFLSDSQGRGQQIRAELALDAGGRFLAIRLS 376 Query: 122 GYGNLGAYITGVAPGPLSLNTGKNLASVYRTPLLGVDIKTVLTNTTLMGAYRGAGRPEAN 181 G GNLGAYITGVAP PLSLNTGKN+ SVYRTPLL VDIK V+TN TLMGAYRGAGRPEAN Sbjct: 377 GTGNLGAYITGVAPLPLSLNTGKNIGSVYRTPLLSVDIKCVVTNVTLMGAYRGAGRPEAN 436 Query: 182 YYMERLIDAAADEMGINRFTLRKRNFIKPSQLPFPAASGVTYDSGDFAAVFQKALEISDY 241 Y++ERLID AADEMGI+R TLRKRNFIKP+Q+PF A SGVTYDSGDFA VF +ALE+SDY Sbjct: 437 YFLERLIDRAADEMGIDRLTLRKRNFIKPTQMPFTACSGVTYDSGDFAGVFGQALELSDY 496 Query: 242 DNFAKRKKESKKSGKLRGIAVGSYLEVTAPPSGELGKISFEPDGSVKLTTGTLDYGQGHA 301 D FAKRKK+++K+GKLRGIAVGSYLEVTAPP+ ELGKI FE DG+V+L TGTLDYGQGHA Sbjct: 497 DGFAKRKKDARKAGKLRGIAVGSYLEVTAPPNPELGKIVFEADGTVRLITGTLDYGQGHA 556 Query: 302 TPFAQVLSDQLGVPFEKITLEQGDSDLVRFGNGTGGSRSITATGQAIVEASALVVEKGKK 361 TPFAQVLS LGVPFE+I LEQGDSD+V GNGTGGSRSITA+G AIVEAS V+ KGK Sbjct: 557 TPFAQVLSTFLGVPFERIRLEQGDSDIVHTGNGTGGSRSITASGMAIVEASQKVIAKGKS 616 Query: 362 AAAHMLEASEADIEFGAGRFTIAGTDRSIGIMELAERMRAGKMPEGTPETLDVDHATK 419 AAAH+LE +EADIEF GRFT+AGTDRSIGIM+LA+R+R ++PEG P +LDVDH T+ Sbjct: 617 AAAHLLETAEADIEFTDGRFTVAGTDRSIGIMDLAQRLRGAELPEGVPASLDVDHTTE 674