BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0033.p         (81 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_532222.1| hypothetical protein RPC_2350 [Rhodopseudomonas...    92   2e-17
ref|YP_001205401.1| hypothetical protein BRADO3381 [Bradyrhizobi...    85   3e-15
ref|YP_781322.1| hypothetical protein RPE_2403 [Rhodopseudomonas...    84   7e-15
ref|YP_001239865.1| hypothetical protein BBta_3887 [Bradyrhizobi...    84   8e-15
ref|YP_570067.1| hypothetical protein RPD_2939 [Rhodopseudomonas...    79   2e-13

>ref|YP_532222.1| hypothetical protein RPC_2350 [Rhodopseudomonas palustris BisB18]
 gb|ABD87903.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisB18]
          Length = 90

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 56/76 (73%), Gaps = 2/76 (2%)

Query: 6  FVALVSVAALGAMAQSAAAEQSYMREGDIVDLRVGQRVLVDDGSCPAGQIKQLVGSRLSQ 65
          F A V +AAL   A  AAAEQ   RE DIVDLR+GQR+LVDDGSCP GQIK+++G+ LS 
Sbjct: 16 FAATVGIAAL-LQATPAAAEQ-VPREQDIVDLRLGQRILVDDGSCPVGQIKEVLGATLSS 73

Query: 66 NGVVRTSSCVPRLAKK 81
           G+ RT SCVPR  KK
Sbjct: 74 TGITRTRSCVPRFGKK 89


>ref|YP_001205401.1| hypothetical protein BRADO3381 [Bradyrhizobium sp. ORS 278]
 emb|CAL77171.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 89

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 49/64 (76%)

Query: 18 MAQSAAAEQSYMREGDIVDLRVGQRVLVDDGSCPAGQIKQLVGSRLSQNGVVRTSSCVPR 77
          M  + A  Q   RE DI DLR+GQRV VDDG+CPAGQ+K+++GSR+S+NG+VRT SCVPR
Sbjct: 24 MLAAPARAQYVGREQDITDLRLGQRVQVDDGTCPAGQVKEVLGSRMSENGIVRTVSCVPR 83

Query: 78 LAKK 81
             K
Sbjct: 84 FGPK 87


>ref|YP_781322.1| hypothetical protein RPE_2403 [Rhodopseudomonas palustris BisA53]
 gb|ABJ06342.1| hypothetical protein RPE_2403 [Rhodopseudomonas palustris BisA53]
          Length = 98

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 56/80 (70%)

Query: 2  LRLGFVALVSVAALGAMAQSAAAEQSYMREGDIVDLRVGQRVLVDDGSCPAGQIKQLVGS 61
          LR   + +   AA+   A S A  Q   RE DI++LR+GQRV+VDDGSCPAGQIK+++GS
Sbjct: 18 LRASSLIIALAAAMLIDASSVALAQVVSREQDIIELRLGQRVMVDDGSCPAGQIKEVMGS 77

Query: 62 RLSQNGVVRTSSCVPRLAKK 81
           ++ +G+ RTS CVPR  K+
Sbjct: 78 TMTTSGITRTSKCVPRALKR 97


>ref|YP_001239865.1| hypothetical protein BBta_3887 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35959.1| hypothetical protein BBta_3887 [Bradyrhizobium sp. BTAi1]
          Length = 67

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 22 AAAEQSYM-REGDIVDLRVGQRVLVDDGSCPAGQIKQLVGSRLSQNGVVRTSSCVPRLAK 80
          A A   Y+  E DI DLR+GQRVLVDDG+CPAGQ+KQ+VG+ +S+NG+VRT +CVPR   
Sbjct: 6  APAHAQYVGSEQDITDLRLGQRVLVDDGTCPAGQVKQVVGATMSENGIVRTVTCVPRFGP 65

Query: 81 K 81
          K
Sbjct: 66 K 66


>ref|YP_570067.1| hypothetical protein RPD_2939 [Rhodopseudomonas palustris BisB5]
 gb|ABE40166.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 87

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 7/77 (9%)

Query: 5  GFVALVSVAALGAMAQSAAAEQSYMREGDIVDLRVGQRVLVDDGSCPAGQIKQLVGSRLS 64
          G VAL+S+A         AA Q   RE DI+DLR+GQ+VLVDDGSCP GQIK+++G+ L+
Sbjct: 18 GAVALLSLAG-------PAAAQHVSREQDIIDLRLGQKVLVDDGSCPNGQIKEVMGATLT 70

Query: 65 QNGVVRTSSCVPRLAKK 81
          + GV RT  CV RL ++
Sbjct: 71 EAGVTRTVKCVARLQRR 87