BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0028.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770800.1| substrate-binding protein [Bradyrhizobium japon... 432 e-119 ref|ZP_08630318.1| periplasmic binding protein [Bradyrhizobiacea... 394 e-108 ref|YP_001771485.1| periplasmic binding protein [Methylobacteriu... 383 e-104 ref|YP_001757905.1| periplasmic binding protein [Methylobacteriu... 380 e-104 ref|YP_003755996.1| periplasmic binding protein [Hyphomicrobium ... 367 e-100 >ref|NP_770800.1| substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49425.1| bll4160 [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 215/258 (83%), Positives = 235/258 (91%) Query: 1 MRDFPPRRIVCLTEETVETLYLLGEQDRIVGVSGYAVRPPRVRREKPRVSAFISAEMPKI 60 MR FPPRRIVCLTEETVETLYLLGEQDRIVGVSGYAVRPP+VRREKPRVSAF+SA++PK+ Sbjct: 1 MRHFPPRRIVCLTEETVETLYLLGEQDRIVGVSGYAVRPPQVRREKPRVSAFVSADIPKV 60 Query: 61 LALDPDLVLAFSDLQADIVADLVRAGIAVHVFNQRDVAGILAMIRSLGAMVGATDRAGQL 120 LAL+PDLVLAFSDLQA IVADLVRAG+ +HVFNQRDVAGI+AMIR+LGA+VGA RA +L Sbjct: 61 LALEPDLVLAFSDLQAGIVADLVRAGLDIHVFNQRDVAGIMAMIRTLGALVGAAKRAQEL 120 Query: 121 AQSLAQRLAAVAATPRPAPQPKVYFEEWDDPLISGIGWVSELIEIAGGTDALPHLRAHKA 180 AQ RLAA+AATPRP+PQPKVYFEEWDDPLISGIGWVSELIEIAGG D P LR +A Sbjct: 121 AQGFELRLAAIAATPRPSPQPKVYFEEWDDPLISGIGWVSELIEIAGGADVFPELRHRQA 180 Query: 181 AKDRIVTPDAVRAAMPDVILASWCGKKVVPDRIRKREGWSDIPAVRNDRIVEIKSPIILQ 240 AKDRIV+ D VR A PDVILASWCGKKVVP RIR REGW +IPAVR++RIVEIKSPIILQ Sbjct: 181 AKDRIVSADDVRQAAPDVILASWCGKKVVPARIRAREGWDEIPAVRDNRIVEIKSPIILQ 240 Query: 241 PGPAALTDGLDAIVKALW 258 PGPAALTDGLDAIV+ALW Sbjct: 241 PGPAALTDGLDAIVQALW 258 >ref|ZP_08630318.1| periplasmic binding protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06697.1| periplasmic binding protein [Bradyrhizobiaceae bacterium SG-6C] Length = 263 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 201/255 (78%), Positives = 220/255 (86%), Gaps = 1/255 (0%) Query: 4 FPPRRIVCLTEETVETLYLLGEQDRIVGVSGYAVRPPRVRREKPRVSAFISAEMPKILAL 63 FPP+RIVCLTEETVETLYLLGEQDRIVGVSGYAVRPP+VRREKPRVSAFISA++PKILAL Sbjct: 3 FPPQRIVCLTEETVETLYLLGEQDRIVGVSGYAVRPPQVRREKPRVSAFISADVPKILAL 62 Query: 64 DPDLVLAFSDLQADIVADLVRAGIAVHVFNQRDVAGILAMIRSLGAMVGATDRAGQLAQS 123 DPDLVLAFSDLQADIVADLVRAG+AVHVFNQRD+AGILAMIR+LG ++G +A LA Sbjct: 63 DPDLVLAFSDLQADIVADLVRAGVAVHVFNQRDIAGILAMIRTLGGLIGEFAKADALAAQ 122 Query: 124 LAQRLAAVAATPRPAPQPKVYFEEWDDPLISGIGWVSELIEIAGGTDALPHLRAHKAAKD 183 QRLA +A+ R +P+VYFEEWDDPLISGIGWVSELI IAGG D L KAAKD Sbjct: 123 FEQRLARIASVKR-VSRPRVYFEEWDDPLISGIGWVSELIAIAGGEDVFTQLARAKAAKD 181 Query: 184 RIVTPDAVRAAMPDVILASWCGKKVVPDRIRKREGWSDIPAVRNDRIVEIKSPIILQPGP 243 RIV P AV AA PDVILASWCGKKVVP +IR+R GW I AVR++RIVEIKSP+ILQPGP Sbjct: 182 RIVAPGAVAAANPDVILASWCGKKVVPAKIRQRPGWDTIAAVRDNRIVEIKSPLILQPGP 241 Query: 244 AALTDGLDAIVKALW 258 AALTDGLDAIV ALW Sbjct: 242 AALTDGLDAIVAALW 256 >ref|YP_001771485.1| periplasmic binding protein [Methylobacterium sp. 4-46] gb|ACA19051.1| periplasmic binding protein [Methylobacterium sp. 4-46] Length = 264 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/259 (76%), Positives = 213/259 (82%) Query: 1 MRDFPPRRIVCLTEETVETLYLLGEQDRIVGVSGYAVRPPRVRREKPRVSAFISAEMPKI 60 MR FPP RIVCLTEET ETLYLLGE+ RIVGVSGYAVRPPRVRREKPRVSAF SA++PKI Sbjct: 1 MRGFPPERIVCLTEETAETLYLLGEEHRIVGVSGYAVRPPRVRREKPRVSAFTSADLPKI 60 Query: 61 LALDPDLVLAFSDLQADIVADLVRAGIAVHVFNQRDVAGILAMIRSLGAMVGATDRAGQL 120 LAL PDLVLAFSDLQA I ADL RAGIAVH+FNQRDVAGILAMIR+LGA+VGA RA L Sbjct: 61 LALSPDLVLAFSDLQAGIAADLARAGIAVHLFNQRDVAGILAMIRTLGALVGAPGRAEDL 120 Query: 121 AQSLAQRLAAVAATPRPAPQPKVYFEEWDDPLISGIGWVSELIEIAGGTDALPHLRAHKA 180 A+ +RL VAA P+P+VYFEEWDDPLISGIGWVSELI +AGG D P L A Sbjct: 121 ARGYEERLGRVAAEAEGRPRPRVYFEEWDDPLISGIGWVSELIGVAGGQDVFPDLARQAA 180 Query: 181 AKDRIVTPDAVRAAMPDVILASWCGKKVVPDRIRKREGWSDIPAVRNDRIVEIKSPIILQ 240 AKDRIV+PDAV AA P+VILASWCGKKVVP RI R GWS IPAV RI E+KSP+ILQ Sbjct: 181 AKDRIVSPDAVVAAAPEVILASWCGKKVVPSRIAARPGWSAIPAVARGRITEVKSPLILQ 240 Query: 241 PGPAALTDGLDAIVKALWP 259 PGPAALTDGLDAI AL P Sbjct: 241 PGPAALTDGLDAIRAALRP 259 >ref|YP_001757905.1| periplasmic binding protein [Methylobacterium radiotolerans JCM 2831] gb|ACB27222.1| periplasmic binding protein [Methylobacterium radiotolerans JCM 2831] Length = 274 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/257 (75%), Positives = 216/257 (84%) Query: 1 MRDFPPRRIVCLTEETVETLYLLGEQDRIVGVSGYAVRPPRVRREKPRVSAFISAEMPKI 60 MR FPP RIVCLTEETVETLYLLGEQDRIVGVSGYAVRPP+VRREKPRVSAF SA++PKI Sbjct: 1 MRRFPPERIVCLTEETVETLYLLGEQDRIVGVSGYAVRPPQVRREKPRVSAFTSADIPKI 60 Query: 61 LALDPDLVLAFSDLQADIVADLVRAGIAVHVFNQRDVAGILAMIRSLGAMVGATDRAGQL 120 LAL PDLVLAFSD+QA IVADL R G+AVH+FNQRDVAGILAMIR++GA+V A DRA L Sbjct: 61 LALAPDLVLAFSDMQAGIVADLARVGVAVHLFNQRDVAGILAMIRTVGALVDARDRAEAL 120 Query: 121 AQSLAQRLAAVAATPRPAPQPKVYFEEWDDPLISGIGWVSELIEIAGGTDALPHLRAHKA 180 A+ +RL+ VA + P+P+VYFEEWD+PLISGIGWVSEL+ IAGG D P L A Sbjct: 121 ARGYEKRLSTVAERAQGRPRPRVYFEEWDEPLISGIGWVSELVRIAGGDDVFPELARQPA 180 Query: 181 AKDRIVTPDAVRAAMPDVILASWCGKKVVPDRIRKREGWSDIPAVRNDRIVEIKSPIILQ 240 AKDRIVTP+AV AA P+VILASWCGKKVV RI R GWS +PAV RIVEIKSP+ILQ Sbjct: 181 AKDRIVTPEAVLAARPEVILASWCGKKVVASRIASRPGWSSMPAVAEGRIVEIKSPLILQ 240 Query: 241 PGPAALTDGLDAIVKAL 257 PGPAALTDGLDAI++A Sbjct: 241 PGPAALTDGLDAILRAF 257 >ref|YP_003755996.1| periplasmic binding protein [Hyphomicrobium denitrificans ATCC 51888] gb|ADJ23675.1| periplasmic binding protein [Hyphomicrobium denitrificans ATCC 51888] Length = 259 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/258 (70%), Positives = 214/258 (82%), Gaps = 1/258 (0%) Query: 1 MRDFPPRRIVCLTEETVETLYLLGEQDRIVGVSGYAVRPPRVRREKPRVSAFISAEMPKI 60 MR+FP RR+VCLTEETVETLYLLGE +RIVGVSGYAVRPPRVR EKPR+SAF SA++PKI Sbjct: 1 MREFPARRLVCLTEETVETLYLLGEDERIVGVSGYAVRPPRVRHEKPRISAFTSADIPKI 60 Query: 61 LALDPDLVLAFSDLQADIVADLVRAGIAVHVFNQRDVAGILAMIRSLGAMVGATDRAGQL 120 AL+PDLVLAFSD+QA I DL RAG+AVHVFNQRD+AGI AMIR++GA++G D+A L Sbjct: 61 AALEPDLVLAFSDIQAGIAGDLARAGLAVHVFNQRDLAGIFAMIRTVGALIGCPDKANDL 120 Query: 121 AQSLAQRLAAVAATPRP-APQPKVYFEEWDDPLISGIGWVSELIEIAGGTDALPHLRAHK 179 A+SL R+ AVA+ R P+P+VYFEEWDDP+ISGI WVSELIE+AGG D R+ Sbjct: 121 ARSLEDRVRAVASETRSRTPRPRVYFEEWDDPMISGICWVSELIEVAGGDDIFAEKRSAA 180 Query: 180 AAKDRIVTPDAVRAAMPDVILASWCGKKVVPDRIRKREGWSDIPAVRNDRIVEIKSPIIL 239 AAKDRIV+ D V A PDVILASWCGKKV P++I R+GW D+PAV N+RI EIKSP+IL Sbjct: 181 AAKDRIVSADDVLARAPDVILASWCGKKVRPEKISDRQGWRDMPAVANNRIHEIKSPLIL 240 Query: 240 QPGPAALTDGLDAIVKAL 257 QPGPAALTDGL+AI AL Sbjct: 241 QPGPAALTDGLNAIRNAL 258