BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0025.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_532227.1| hypothetical protein RPC_2355 [Rhodopseudomonas...   145   2e-33
ref|YP_001239870.1| hypothetical protein BBta_3892 [Bradyrhizobi...   128   3e-28
ref|YP_781325.1| hypothetical protein RPE_2406 [Rhodopseudomonas...   128   3e-28
ref|YP_001205406.1| hypothetical protein BRADO3386 [Bradyrhizobi...   124   6e-27
ref|YP_004108721.1| hypothetical protein Rpdx1_2397 [Rhodopseudo...   121   4e-26

>ref|YP_532227.1| hypothetical protein RPC_2355 [Rhodopseudomonas palustris BisB18]
 gb|ABD87908.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 99

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 84/102 (82%), Gaps = 3/102 (2%)

Query: 1   MSGDWNTKYGTRRVRHDPPTLEEAIFAAIGITDDVEAQAEIASALMGLPYDDVLAEVKKT 60
           MS DWNTKYG RRVR DPPTL+EAIFAA+GITDD+E+QAEIA++LMG+P + V  EV+K 
Sbjct: 1   MSEDWNTKYGVRRVRRDPPTLDEAIFAAMGITDDLESQAEIAASLMGMPVESVQTEVRKA 60

Query: 61  ARVSARTGTATRVIAGEQGAQRSVVVERRVVRRFATDKRTGT 102
           +R +ART   TRVI GEQG QRS+VVERRV R+F  DKR G+
Sbjct: 61  SRAAART---TRVITGEQGFQRSIVVERRVTRKFGNDKRIGS 99


>ref|YP_001239870.1| hypothetical protein BBta_3892 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35964.1| hypothetical protein BBta_3892 [Bradyrhizobium sp. BTAi1]
          Length = 101

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 85/103 (82%), Gaps = 3/103 (2%)

Query: 1   MSGDWNTKYGTRRVRHDPPTLEEAIFAAIGITDDVEAQAEIASALMGLPYDDVLAEVKKT 60
           MS DWNTKYG RRVR DPPTLEEAIFAA GITDDV+AQAEIASALMGLP + VL EVKK 
Sbjct: 1   MSEDWNTKYGPRRVRRDPPTLEEAIFAASGITDDVQAQAEIASALMGLPLEQVLPEVKKA 60

Query: 61  ARVSARTGTATRVIAGEQGAQR-SVVVERRVVRRFATDKRTGT 102
           +RV+ART   TRVI  +QG Q+ +VVVERR VRRF  DKRTGT
Sbjct: 61  SRVAARTN--TRVITADQGTQQRAVVVERRTVRRFNFDKRTGT 101


>ref|YP_781325.1| hypothetical protein RPE_2406 [Rhodopseudomonas palustris BisA53]
 gb|ABJ06345.1| hypothetical protein RPE_2406 [Rhodopseudomonas palustris BisA53]
          Length = 99

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 86/99 (86%), Gaps = 3/99 (3%)

Query: 1  MSGDWNTKYGTRRVRHDPPTLEEAIFAAIGITDDVEAQAEIASALMGLPYDDVLAEVKKT 60
          M+GDWNTKYG RRVR DPPTLEEAIFAA+GITDD+E+QAEIA++LMGLP + V +EV+K 
Sbjct: 1  MNGDWNTKYGVRRVRRDPPTLEEAIFAAMGITDDLESQAEIAASLMGLPVEAVQSEVRKA 60

Query: 61 ARVSARTGTATRVIAGEQGAQRSVVVERRVVRRFATDKR 99
          +R +ART   TRVI GEQGAQRSVVVERRV RRFA DKR
Sbjct: 61 SRAAART---TRVITGEQGAQRSVVVERRVTRRFAVDKR 96


>ref|YP_001205406.1| hypothetical protein BRADO3386 [Bradyrhizobium sp. ORS 278]
 emb|CAL77176.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 100

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 82/102 (80%), Gaps = 3/102 (2%)

Query: 1   MSGDWNTKYGTRRVRHDPPTLEEAIFAAIGITDDVEAQAEIASALMGLPYDDVLAEVKKT 60
           MS DWNTKYG RRVR DPPTLEEAIFAA GITDDV+AQAEIASALMGLP + VL EVKK 
Sbjct: 1   MSEDWNTKYGPRRVRRDPPTLEEAIFAASGITDDVQAQAEIASALMGLPLEQVLPEVKKA 60

Query: 61  ARVSARTGTATRVIAGEQGAQR-SVVVERRVVRRFATDKRTG 101
            RV+ART   TRVI  +QG Q+ +VVVERR VRRF  DKRT 
Sbjct: 61  VRVAARTN--TRVITADQGTQQRAVVVERRTVRRFNFDKRTA 100


>ref|YP_004108721.1| hypothetical protein Rpdx1_2397 [Rhodopseudomonas palustris DX-1]
 gb|ADU43988.1| hypothetical protein Rpdx1_2397 [Rhodopseudomonas palustris DX-1]
          Length = 104

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 68/81 (83%), Gaps = 3/81 (3%)

Query: 1  MSGDWNTKYGTRRVRHDPPTLEEAIFAAIGITDDVEAQAEIASALMGLPYDDVLAEVKKT 60
          MS DWNTKYG RRVR DPPTLEEAIFAA GITDDV++QAEIA++LMG+P D VL EV+K+
Sbjct: 1  MSEDWNTKYGVRRVRRDPPTLEEAIFAAAGITDDVDSQAEIAASLMGMPIDAVLKEVRKS 60

Query: 61 ARVSARTGTATRVIAGEQGAQ 81
          AR SART   +RVI GEQG Q
Sbjct: 61 ARASART---SRVITGEQGFQ 78