BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0022.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770816.1| hypothetical protein blr4176 [Bradyrhizobium ja...   122   3e-26
ref|YP_486543.1| hypothetical protein RPB_2930 [Rhodopseudomonas...   110   1e-22
ref|NP_770810.1| hypothetical protein blr4170 [Bradyrhizobium ja...   105   2e-21
ref|YP_569670.1| hypothetical protein RPD_2539 [Rhodopseudomonas...   102   2e-20
ref|NP_771186.1| hypothetical protein bll4546 [Bradyrhizobium ja...    93   1e-17

>ref|NP_770816.1| hypothetical protein blr4176 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49441.1| blr4176 [Bradyrhizobium japonicum USDA 110]
          Length = 275

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 82/110 (74%)

Query: 20  IRNGLYHITVEFLDGVSGGNQGVMVLRDGQMRGGDSFFFAYGSYTAADGKWKGEVINEEH 79
           I NGLY +++  LDGV  G  GVM+L DG++ GGD+FF+  GSY++ADG+WKGE++N+EH
Sbjct: 163 IVNGLYGMSLRALDGVDAGLSGVMLLIDGRILGGDAFFYYLGSYSSADGRWKGEMLNQEH 222

Query: 80  SPTYGERPVWERKVVTIGFTGTYTDQTAEGDGMALAGKQSIRFRSKLRLL 129
           +P  GE PV+    V IGF+GT T  + E +G+ALAGK+S+R  + L+L+
Sbjct: 223 TPAKGENPVFGGYEVGIGFSGTCTADSGELEGIALAGKRSLRLAASLKLM 272



 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 20  IRNGLYHITVEFLDGVSGGNQGVMVLRDGQMRGGDSFFFAYGSYTAADGKWKGEVINEEH 79
           + +GLY +     D      + +M L DG+M GG+S F   G+Y   DG+   EVI E H
Sbjct: 42  LLDGLYKVEYGVNDAF---GRSIMCLHDGKMLGGNSGFAHLGTYVERDGEIIAEVITERH 98

Query: 80  SPTYGERPVWERKVVTIGFTG 100
           +     +P+    V +IG  G
Sbjct: 99  NLDPNYKPLMGADVASIGARG 119


>ref|YP_486543.1| hypothetical protein RPB_2930 [Rhodopseudomonas palustris HaA2]
 gb|ABD07632.1| hypothetical protein RPB_2930 [Rhodopseudomonas palustris HaA2]
          Length = 116

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 76/113 (67%), Gaps = 4/113 (3%)

Query: 20  IRNGLYHITVEFLDGVSGGNQGVMVLRDGQMRGGDSFFFAYGSYTAADGKWKGEVINEEH 79
           +RNGLY I +  LDGV G + G+++LRDG++ GGD +F+  G YT  DG WKGE++  +H
Sbjct: 1   MRNGLYSIHIRMLDGVRGRSNGIIILRDGRLLGGDPYFWTVGDYTIGDGHWKGELLTRQH 60

Query: 80  SPTYGE---RPVWERKVVTIGFTGTYTDQTAEGDGMALAGKQSIRFRSKLRLL 129
           +P Y E   RPV+  + VT GFTGT+ D  +E  G +L G +S+ FR+ LR L
Sbjct: 61  TP-YAETPARPVFAGRDVTTGFTGTFADDRSEVFGTSLVGSRSVSFRATLRRL 112


>ref|NP_770810.1| hypothetical protein blr4170 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49435.1| blr4170 [Bradyrhizobium japonicum USDA 110]
          Length = 244

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 20  IRNGLYHITVEFLDGVSGGNQGVMVLRDGQMRGGDSFFFAYGSYTAADGKWKGEVINEEH 79
           I +GLY I +  LDGV GG  GVM+L  G++ GGD+ F+  GSYTAA+G+WKG+++N+EH
Sbjct: 133 IADGLYSIHLRMLDGVDGGLTGVMLLNQGRILGGDAAFYYLGSYTAANGRWKGQILNQEH 192

Query: 80  SPTYGERPVWERKVVTIGFTGTYTDQTAEGDGMALAGKQSIRFRSKLRLL 129
           +P   + P++    V IGF+G+Y  + A  +  ALAGK+S+R  + L+L+
Sbjct: 193 TPAK-DDPIFGGHEVGIGFSGSYDAEQAVLEATALAGKRSLRLTAALKLM 241


>ref|YP_569670.1| hypothetical protein RPD_2539 [Rhodopseudomonas palustris BisB5]
 gb|ABE39769.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 116

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 74/116 (63%), Gaps = 4/116 (3%)

Query: 20  IRNGLYHITVEFLDGVSGGNQGVMVLRDGQMRGGDSFFFAYGSYTAADGKWKGEVINEEH 79
           +RNGLY I +  LDGV      +++LRDG++ GGD +F++ G YT  DG WKG+++  +H
Sbjct: 1   MRNGLYSIHIRMLDGVRAWANWIIILRDGKLLGGDPYFWSVGDYTVGDGNWKGDLLTRQH 60

Query: 80  SPTYGE---RPVWERKVVTIGFTGTYTDQTAEGDGMALAGKQSIRFRSKLRLLVAD 132
           +P Y E   RPV+  + V+ GF+GT+ D  +E  G +L G +S+ FR+ L  L  D
Sbjct: 61  TP-YAETPARPVFAGREVSTGFSGTFADDRSEVFGTSLVGSRSVSFRATLHWLADD 115


>ref|NP_771186.1| hypothetical protein bll4546 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49811.1| bll4546 [Bradyrhizobium japonicum USDA 110]
          Length = 152

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 70/109 (64%)

Query: 20  IRNGLYHITVEFLDGVSGGNQGVMVLRDGQMRGGDSFFFAYGSYTAADGKWKGEVINEEH 79
           + NGLY   +E  DG  G  +GV+VL DG++ GGDS+F+  GSYT  +GKW+G++I  +H
Sbjct: 40  VVNGLYIFDIEMRDGKRGQARGVVVLCDGRIMGGDSYFYYTGSYTFRNGKWRGDMIVNQH 99

Query: 80  SPTYGERPVWERKVVTIGFTGTYTDQTAEGDGMALAGKQSIRFRSKLRL 128
           +   G   V+  + VT GF+G Y    AE +GMAL GK S+ F ++L L
Sbjct: 100 TEAVGRSLVFGGREVTCGFSGDYFPGGAEVEGMALVGKISVTFTARLTL 148