BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0014.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770810.1| hypothetical protein blr4170 [Bradyrhizobium ja... 386 e-105 ref|NP_770816.1| hypothetical protein blr4176 [Bradyrhizobium ja... 276 3e-72 ref|NP_771186.1| hypothetical protein bll4546 [Bradyrhizobium ja... 103 2e-20 ref|YP_004108569.1| hypothetical protein Rpdx1_2244 [Rhodopseudo... 102 4e-20 ref|YP_533236.1| hypothetical protein RPC_3376 [Rhodopseudomonas... 100 1e-19 >ref|NP_770810.1| hypothetical protein blr4170 [Bradyrhizobium japonicum USDA 110] dbj|BAC49435.1| blr4170 [Bradyrhizobium japonicum USDA 110] Length = 244 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/234 (81%), Positives = 213/234 (91%), Gaps = 1/234 (0%) Query: 1 LFEGFYKVRFELGGAVGRSVMYVGDGKMLGGNSAFAHIGTYAKAGDEIAVEIQTVRHNPD 60 +FEGFYKVRF+LG AVGRSVM+ G+GKMLGGNSAFAHIGTY K D + + I+TVRHNPD Sbjct: 12 VFEGFYKVRFQLGDAVGRSVMHAGNGKMLGGNSAFAHIGTYEKTDDGVDIVIKTVRHNPD 71 Query: 61 PNYRAMAGTDDATLIAKGRPDGELYRFKGELKELPGVPFQSVMTPITKEDILIAGGVGEG 120 PNYRAMAGTDDATL+AKGR DG+LYRFKGELKELPGVPFQSVMTPIT++++ IAGGVGEG Sbjct: 72 PNYRAMAGTDDATLLAKGRADGDLYRFKGELKELPGVPFQSVMTPITEDEVPIAGGVGEG 131 Query: 121 GVINGLYSIHIRVLDGVDGGLTGVMLLNNGRILGGDAFFYYLGTYTSEKGRWKGQILNQE 180 G+ +GLYSIH+R+LDGVDGGLTGVMLLN GRILGGDA FYYLG+YT+ GRWKGQILNQE Sbjct: 132 GIADGLYSIHLRMLDGVDGGLTGVMLLNQGRILGGDAAFYYLGSYTAANGRWKGQILNQE 191 Query: 181 HTSAMGENPIFGGHEVGIGFAGTCDAEGAVLEATALAGKRSLRLTAALKLMRRA 234 HT A ++PIFGGHEVGIGF+G+ DAE AVLEATALAGKRSLRLTAALKLM RA Sbjct: 192 HTPAK-DDPIFGGHEVGIGFSGSYDAEQAVLEATALAGKRSLRLTAALKLMHRA 244 >ref|NP_770816.1| hypothetical protein blr4176 [Bradyrhizobium japonicum USDA 110] dbj|BAC49441.1| blr4176 [Bradyrhizobium japonicum USDA 110] Length = 275 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 136/234 (58%), Positives = 171/234 (73%) Query: 1 LFEGFYKVRFELGGAVGRSVMYVGDGKMLGGNSAFAHIGTYAKAGDEIAVEIQTVRHNPD 60 L +G YKV + + A GRS+M + DGKMLGGNS FAH+GTY + EI E+ T RHN D Sbjct: 42 LLDGLYKVEYGVNDAFGRSIMCLHDGKMLGGNSGFAHLGTYVERDGEIIAEVITERHNLD 101 Query: 61 PNYRAMAGTDDATLIAKGRPDGELYRFKGELKELPGVPFQSVMTPITKEDILIAGGVGEG 120 PNY+ + G D A++ A+GR G R +G +PG F + +T + E + +G VG Sbjct: 102 PNYKPLMGADVASIGARGRLHGNQIRLEGGADTMPGAKFWANLTRLDDEAVPPSGAVGPC 161 Query: 121 GVINGLYSIHIRVLDGVDGGLTGVMLLNNGRILGGDAFFYYLGTYTSEKGRWKGQILNQE 180 G++NGLY + +R LDGVD GL+GVMLL +GRILGGDAFFYYLG+Y+S GRWKG++LNQE Sbjct: 162 GIVNGLYGMSLRALDGVDAGLSGVMLLIDGRILGGDAFFYYLGSYSSADGRWKGEMLNQE 221 Query: 181 HTSAMGENPIFGGHEVGIGFAGTCDAEGAVLEATALAGKRSLRLTAALKLMRRA 234 HT A GENP+FGG+EVGIGF+GTC A+ LE ALAGKRSLRL A+LKLMRRA Sbjct: 222 HTPAKGENPVFGGYEVGIGFSGTCTADSGELEGIALAGKRSLRLAASLKLMRRA 275 >ref|NP_771186.1| hypothetical protein bll4546 [Bradyrhizobium japonicum USDA 110] dbj|BAC49811.1| bll4546 [Bradyrhizobium japonicum USDA 110] Length = 152 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 5/126 (3%) Query: 110 DILIAGGVG-----EGGVINGLYSIHIRVLDGVDGGLTGVMLLNNGRILGGDAFFYYLGT 164 D L++ G G E V+NGLY I + DG G GV++L +GRI+GGD++FYY G+ Sbjct: 23 DDLMSAGEGSETGEEASVVNGLYIFDIEMRDGKRGQARGVVVLCDGRIMGGDSYFYYTGS 82 Query: 165 YTSEKGRWKGQILNQEHTSAMGENPIFGGHEVGIGFAGTCDAEGAVLEATALAGKRSLRL 224 YT G+W+G ++ +HT A+G + +FGG EV GF+G GA +E AL GK S+ Sbjct: 83 YTFRNGKWRGDMIVNQHTEAVGRSLVFGGREVTCGFSGDYFPGGAEVEGMALVGKISVTF 142 Query: 225 TAALKL 230 TA L L Sbjct: 143 TARLTL 148 >ref|YP_004108569.1| hypothetical protein Rpdx1_2244 [Rhodopseudomonas palustris DX-1] gb|ADU43836.1| hypothetical protein Rpdx1_2244 [Rhodopseudomonas palustris DX-1] Length = 116 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 2/113 (1%) Query: 124 NGLYSIHIRVLDGVDGGLTGVMLLNNGRILGGDAFFYYLGTYTSEKGRWKGQILNQEHTS 183 NGLYSIH+ +LDG G +GV+L +G+ILGGDA+ +Y+G+Y S +KG++ +HT Sbjct: 3 NGLYSIHVDLLDGRSGKGSGVVLFRDGKILGGDAYLFYVGSYVSTGDSFKGEVTVTQHTP 62 Query: 184 AMGENPIFGGHE--VGIGFAGTCDAEGAVLEATALAGKRSLRLTAALKLMRRA 234 + NP+FGG + VG+G GT D + AV+ TAL GK S A L+ + A Sbjct: 63 SPDANPLFGGQKEPVGVGVTGTSDGQAAVMTGTALVGKSSQLFRATLRWLAPA 115 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 3 EGFYKVRFEL---GGAVGRSVMYVGDGKMLGGNSAFAHIGTYAKAGDEIAVEIQTVRHNP 59 G Y + +L G V+ DGK+LGG++ ++G+Y GD E+ +H P Sbjct: 3 NGLYSIHVDLLDGRSGKGSGVVLFRDGKILGGDAYLFYVGSYVSTGDSFKGEVTVTQHTP 62 Query: 60 DPNYRAMAG 68 P+ + G Sbjct: 63 SPDANPLFG 71 >ref|YP_533236.1| hypothetical protein RPC_3376 [Rhodopseudomonas palustris BisB18] gb|ABD88917.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 116 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 124 NGLYSIHIRVLDGVDGGLTGVMLLNNGRILGGDAFFYYLGTYTSEKGRWKGQILNQEHTS 183 NGLYSIH+ +LDG G +GV++ NG ILGGDA+ +Y G+YT +KG++L +HT Sbjct: 3 NGLYSIHVDLLDGRSGKGSGVVIFRNGTILGGDAYLFYTGSYTVSGDSFKGEVLVSQHTP 62 Query: 184 AMGENPIFGGHE--VGIGFAGTCDAEGAVLEATALAGKRSLRLTAALKLMRRA 234 + +P+FGG + VGIG +GT A AV+ TAL GK L A L+ + A Sbjct: 63 SPDADPLFGGQKNPVGIGVSGTATATSAVINGTALVGKACLLFKATLRKLADA 115