BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0006.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770816.1| hypothetical protein blr4176 [Bradyrhizobium ja... 374 e-102 ref|NP_770810.1| hypothetical protein blr4170 [Bradyrhizobium ja... 261 5e-68 ref|NP_771186.1| hypothetical protein bll4546 [Bradyrhizobium ja... 105 7e-21 ref|YP_486543.1| hypothetical protein RPB_2930 [Rhodopseudomonas... 103 2e-20 ref|YP_569670.1| hypothetical protein RPD_2539 [Rhodopseudomonas... 101 8e-20 >ref|NP_770816.1| hypothetical protein blr4176 [Bradyrhizobium japonicum USDA 110] dbj|BAC49441.1| blr4176 [Bradyrhizobium japonicum USDA 110] Length = 275 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/234 (78%), Positives = 202/234 (86%) Query: 1 VLNGLYKVEYGINGAFGRSIMCMHDGKMLGGNSAFAHLGTYQVTEGEIAAEVITERHNDD 60 +L+GLYKVEYG+N AFGRSIMC+HDGKMLGGNS FAHLGTY +GEI AEVITERHN D Sbjct: 42 LLDGLYKVEYGVNDAFGRSIMCLHDGKMLGGNSGFAHLGTYVERDGEIIAEVITERHNLD 101 Query: 61 PNFKPLMGTDVTVIKVRGRREGSTILLEGKADAMPDGVFWANLAPLDDEALPPRGAVGPG 120 PN+KPLMG DV I RGR G+ I LEG AD MP FWANL LDDEA+PP GAVGP Sbjct: 102 PNYKPLMGADVASIGARGRLHGNQIRLEGGADTMPGAKFWANLTRLDDEAVPPSGAVGPC 161 Query: 121 GIVNGLYSIHLRALDGVDAGLTGVMLLMDGRILGGDAFFYYLGSYSSADGRWRGEIVNQE 180 GIVNGLY + LRALDGVDAGL+GVMLL+DGRILGGDAFFYYLGSYSSADGRW+GE++NQE Sbjct: 162 GIVNGLYGMSLRALDGVDAGLSGVMLLIDGRILGGDAFFYYLGSYSSADGRWKGEMLNQE 221 Query: 181 HTPAKGEYPVFGGYEVGIGFAGSCRADGAELEGIALAGKRSLRLSAELRLMRRA 234 HTPAKGE PVFGGYEVGIGF+G+C AD ELEGIALAGKRSLRL+A L+LMRRA Sbjct: 222 HTPAKGENPVFGGYEVGIGFSGTCTADSGELEGIALAGKRSLRLAASLKLMRRA 275 >ref|NP_770810.1| hypothetical protein blr4170 [Bradyrhizobium japonicum USDA 110] dbj|BAC49435.1| blr4170 [Bradyrhizobium japonicum USDA 110] Length = 244 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 132/234 (56%), Positives = 170/234 (72%), Gaps = 1/234 (0%) Query: 1 VLNGLYKVEYGINGAFGRSIMCMHDGKMLGGNSAFAHLGTYQVTEGEIAAEVITERHNDD 60 V G YKV + + A GRS+M +GKMLGGNSAFAH+GTY+ T+ + + T RHN D Sbjct: 12 VFEGFYKVRFQLGDAVGRSVMHAGNGKMLGGNSAFAHIGTYEKTDDGVDIVIKTVRHNPD 71 Query: 61 PNFKPLMGTDVTVIKVRGRREGSTILLEGKADAMPDGVFWANLAPLDDEALPPRGAVGPG 120 PN++ + GTD + +GR +G +G+ +P F + + P+ ++ +P G VG G Sbjct: 72 PNYRAMAGTDDATLLAKGRADGDLYRFKGELKELPGVPFQSVMTPITEDEVPIAGGVGEG 131 Query: 121 GIVNGLYSIHLRALDGVDAGLTGVMLLMDGRILGGDAFFYYLGSYSSADGRWRGEIVNQE 180 GI +GLYSIHLR LDGVD GLTGVMLL GRILGGDA FYYLGSY++A+GRW+G+I+NQE Sbjct: 132 GIADGLYSIHLRMLDGVDGGLTGVMLLNQGRILGGDAAFYYLGSYTAANGRWKGQILNQE 191 Query: 181 HTPAKGEYPVFGGYEVGIGFAGSCRADGAELEGIALAGKRSLRLSAELRLMRRA 234 HTPAK + P+FGG+EVGIGF+GS A+ A LE ALAGKRSLRL+A L+LM RA Sbjct: 192 HTPAKDD-PIFGGHEVGIGFSGSYDAEQAVLEATALAGKRSLRLTAALKLMHRA 244 >ref|NP_771186.1| hypothetical protein bll4546 [Bradyrhizobium japonicum USDA 110] dbj|BAC49811.1| bll4546 [Bradyrhizobium japonicum USDA 110] Length = 152 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 53/109 (48%), Positives = 72/109 (66%) Query: 122 IVNGLYSIHLRALDGVDAGLTGVMLLMDGRILGGDAFFYYLGSYSSADGRWRGEIVNQEH 181 +VNGLY + DG GV++L DGRI+GGD++FYY GSY+ +G+WRG+++ +H Sbjct: 40 VVNGLYIFDIEMRDGKRGQARGVVVLCDGRIMGGDSYFYYTGSYTFRNGKWRGDMIVNQH 99 Query: 182 TPAKGEYPVFGGYEVGIGFAGSCRADGAELEGIALAGKRSLRLSAELRL 230 T A G VFGG EV GF+G GAE+EG+AL GK S+ +A L L Sbjct: 100 TEAVGRSLVFGGREVTCGFSGDYFPGGAEVEGMALVGKISVTFTARLTL 148 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Query: 1 VLNGLYKVEYGI-NGAFG--RSIMCMHDGKMLGGNSAFAHLGTYQVTEGEIAAEVITERH 57 V+NGLY + + +G G R ++ + DG+++GG+S F + G+Y G+ ++I +H Sbjct: 40 VVNGLYIFDIEMRDGKRGQARGVVVLCDGRIMGGDSYFYYTGSYTFRNGKWRGDMIVNQH 99 Query: 58 ND 59 + Sbjct: 100 TE 101 >ref|YP_486543.1| hypothetical protein RPB_2930 [Rhodopseudomonas palustris HaA2] gb|ABD07632.1| hypothetical protein RPB_2930 [Rhodopseudomonas palustris HaA2] Length = 116 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/110 (45%), Positives = 71/110 (64%), Gaps = 2/110 (1%) Query: 124 NGLYSIHLRALDGVDAGLTGVMLLMDGRILGGDAFFYYLGSYSSADGRWRGEIVNQEHTP 183 NGLYSIH+R LDGV G+++L DGR+LGGD +F+ +G Y+ DG W+GE++ ++HTP Sbjct: 3 NGLYSIHIRMLDGVRGRSNGIIILRDGRLLGGDPYFWTVGDYTIGDGHWKGELLTRQHTP 62 Query: 184 --AKGEYPVFGGYEVGIGFAGSCRADGAELEGIALAGKRSLRLSAELRLM 231 PVF G +V GF G+ D +E+ G +L G RS+ A LR + Sbjct: 63 YAETPARPVFAGRDVTTGFTGTFADDRSEVFGTSLVGSRSVSFRATLRRL 112 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%) Query: 3 NGLYKVEYG-INGAFGRS--IMCMHDGKMLGGNSAFAHLGTYQVTEGEIAAEVITERHN- 58 NGLY + ++G GRS I+ + DG++LGG+ F +G Y + +G E++T +H Sbjct: 3 NGLYSIHIRMLDGVRGRSNGIIILRDGRLLGGDPYFWTVGDYTIGDGHWKGELLTRQHTP 62 Query: 59 --DDPNFKPLMGTDVTV 73 + P G DVT Sbjct: 63 YAETPARPVFAGRDVTT 79 >ref|YP_569670.1| hypothetical protein RPD_2539 [Rhodopseudomonas palustris BisB5] gb|ABE39769.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 116 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 71/110 (64%), Gaps = 2/110 (1%) Query: 124 NGLYSIHLRALDGVDAGLTGVMLLMDGRILGGDAFFYYLGSYSSADGRWRGEIVNQEHTP 183 NGLYSIH+R LDGV A +++L DG++LGGD +F+ +G Y+ DG W+G+++ ++HTP Sbjct: 3 NGLYSIHIRMLDGVRAWANWIIILRDGKLLGGDPYFWSVGDYTVGDGNWKGDLLTRQHTP 62 Query: 184 --AKGEYPVFGGYEVGIGFAGSCRADGAELEGIALAGKRSLRLSAELRLM 231 PVF G EV GF+G+ D +E+ G +L G RS+ A L + Sbjct: 63 YAETPARPVFAGREVSTGFSGTFADDRSEVFGTSLVGSRSVSFRATLHWL 112 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 3 NGLYKVEYG-ING--AFGRSIMCMHDGKMLGGNSAFAHLGTYQVTEGEIAAEVITERHN 58 NGLY + ++G A+ I+ + DGK+LGG+ F +G Y V +G +++T +H Sbjct: 3 NGLYSIHIRMLDGVRAWANWIIILRDGKLLGGDPYFWSVGDYTVGDGNWKGDLLTRQHT 61