BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0025.p         (283 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001236587.1| succinyl-CoA synthetase (ADP-forming) subuni...   520   e-145
ref|YP_001202599.1| succinyl-CoA synthetase subunit alpha, NAD(P...   519   e-145
ref|NP_767093.1| succinyl-CoA synthetase subunit alpha [Bradyrhi...   518   e-145
ref|YP_001989223.1| succinyl-CoA synthetase subunit alpha [Rhodo...   518   e-145
ref|YP_004106822.1| succinyl-CoA synthetase subunit alpha [Rhodo...   516   e-144

>ref|YP_001236587.1| succinyl-CoA synthetase (ADP-forming) subunit alpha [Bradyrhizobium
           sp. BTAi1]
 gb|ABQ32681.1| succinyl-CoA synthetase (ADP-forming) alpha subunit [Bradyrhizobium
           sp. BTAi1]
          Length = 294

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/293 (89%), Positives = 271/293 (92%), Gaps = 10/293 (3%)

Query: 1   MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGGVAPGKGGSTHLNLPVFDTVAEA 60
           MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGG +PGKGGSTHL LPVFDTV EA
Sbjct: 1   MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGGTSPGKGGSTHLGLPVFDTVKEA 60

Query: 61  RQKTGADASVVYVPPPGAADAICEAIDAEIPLIVCITEGIPVLDMVRVKRSLSGSKSRLI 120
           R+ TGADASV+YVPPPGAADAICEAIDAE+PLIVCITEGIPVLDMVRVKRSL GSKSRLI
Sbjct: 61  REATGADASVIYVPPPGAADAICEAIDAEVPLIVCITEGIPVLDMVRVKRSLQGSKSRLI 120

Query: 121 GPNC----------XGIMPANIFKPGSVGIVSRSGTLTYEAVFQTTQEGLGQTTAVGIGG 170
           GPNC           GIMPANIFKPGSVGIVSRSGTLTYEAVFQTT EGLGQTTAVGIGG
Sbjct: 121 GPNCPGVMTAGECKIGIMPANIFKPGSVGIVSRSGTLTYEAVFQTTSEGLGQTTAVGIGG 180

Query: 171 DPVKGTEFIDVLELFLADEKTKSIVMIGEIGGSAEEDAAQFLKDEAKRGRKKPMVGFIAG 230
           DPVKGTEFID+LE+FLAD KT+SI+MIGEIGGSAEEDAAQF+KDEAKRGRKKPMVGFIAG
Sbjct: 181 DPVKGTEFIDMLEMFLADPKTESIIMIGEIGGSAEEDAAQFIKDEAKRGRKKPMVGFIAG 240

Query: 231 VTAPPGRRMGHAGAIISGGKGDAGSKTAAMEAAGIKVSPSPARLGHTLAEMLK 283
           VTAPPGRRMGHAGAIISGGKGDAGSKTAAMEAAGI VSPSPARLG TL E LK
Sbjct: 241 VTAPPGRRMGHAGAIISGGKGDAGSKTAAMEAAGITVSPSPARLGKTLVEKLK 293


>ref|YP_001202599.1| succinyl-CoA synthetase subunit alpha, NAD(P)-binding
           [Bradyrhizobium sp. ORS 278]
 emb|CAL74353.1| succinyl-CoA synthetase, alpha subunit, NAD(P)-binding
           [Bradyrhizobium sp. ORS 278]
          Length = 294

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/293 (89%), Positives = 271/293 (92%), Gaps = 10/293 (3%)

Query: 1   MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGGVAPGKGGSTHLNLPVFDTVAEA 60
           MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGG +PGKGGSTHL LPVFDTV EA
Sbjct: 1   MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGGTSPGKGGSTHLGLPVFDTVKEA 60

Query: 61  RQKTGADASVVYVPPPGAADAICEAIDAEIPLIVCITEGIPVLDMVRVKRSLSGSKSRLI 120
           R+ TGADASV+YVPPPGAADAICEAIDAE+PLIVCITEGIPVLDMVRVKRSL GSKSRLI
Sbjct: 61  REATGADASVIYVPPPGAADAICEAIDAEVPLIVCITEGIPVLDMVRVKRSLVGSKSRLI 120

Query: 121 GPNC----------XGIMPANIFKPGSVGIVSRSGTLTYEAVFQTTQEGLGQTTAVGIGG 170
           GPNC           GIMPANIFKPGSVGIVSRSGTLTYEAVFQTT EGLGQTTAVGIGG
Sbjct: 121 GPNCPGVMTAGECKIGIMPANIFKPGSVGIVSRSGTLTYEAVFQTTSEGLGQTTAVGIGG 180

Query: 171 DPVKGTEFIDVLELFLADEKTKSIVMIGEIGGSAEEDAAQFLKDEAKRGRKKPMVGFIAG 230
           DPVKGTEFID+LE+FLAD KT+SI+MIGEIGGSAEEDAAQF+KDEAKRGRKKPMVGFIAG
Sbjct: 181 DPVKGTEFIDMLEMFLADPKTESIIMIGEIGGSAEEDAAQFIKDEAKRGRKKPMVGFIAG 240

Query: 231 VTAPPGRRMGHAGAIISGGKGDAGSKTAAMEAAGIKVSPSPARLGHTLAEMLK 283
           VTAPPGRRMGHAGAIISGGKGDAGSKTAAMEAAGI VSPSPARLG TL E LK
Sbjct: 241 VTAPPGRRMGHAGAIISGGKGDAGSKTAAMEAAGITVSPSPARLGKTLVEKLK 293


>ref|NP_767093.1| succinyl-CoA synthetase subunit alpha [Bradyrhizobium japonicum
           USDA 110]
 dbj|BAC45718.1| succinyl-CoA synthetase alpha chain [Bradyrhizobium japonicum USDA
           110]
          Length = 294

 Score =  518 bits (1334), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 261/293 (89%), Positives = 273/293 (93%), Gaps = 10/293 (3%)

Query: 1   MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGGVAPGKGGSTHLNLPVFDTVAEA 60
           MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGG +PGKGGSTHL LPVFDTV +A
Sbjct: 1   MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGGTSPGKGGSTHLGLPVFDTVRDA 60

Query: 61  RQKTGADASVVYVPPPGAADAICEAIDAEIPLIVCITEGIPVLDMVRVKRSLSGSKSRLI 120
           R+KTGADASV+YVPPPGAADAICEAIDAEIPLIVCITEGIPV+DMVRVKRSL+GSKSRLI
Sbjct: 61  REKTGADASVIYVPPPGAADAICEAIDAEIPLIVCITEGIPVIDMVRVKRSLAGSKSRLI 120

Query: 121 GPNC----------XGIMPANIFKPGSVGIVSRSGTLTYEAVFQTTQEGLGQTTAVGIGG 170
           GPNC           GIMPANIFK GSVGIVSRSGTLTYEAVFQT+QEGLGQTTAVGIGG
Sbjct: 121 GPNCPGVMTAGECKIGIMPANIFKTGSVGIVSRSGTLTYEAVFQTSQEGLGQTTAVGIGG 180

Query: 171 DPVKGTEFIDVLELFLADEKTKSIVMIGEIGGSAEEDAAQFLKDEAKRGRKKPMVGFIAG 230
           DPVKGTEFIDVLE+ LAD KT+SI+MIGEIGGSAEEDAAQFLKDEAKRGRKKPMVGFIAG
Sbjct: 181 DPVKGTEFIDVLEMLLADPKTESIIMIGEIGGSAEEDAAQFLKDEAKRGRKKPMVGFIAG 240

Query: 231 VTAPPGRRMGHAGAIISGGKGDAGSKTAAMEAAGIKVSPSPARLGHTLAEMLK 283
           VTAPPGRRMGHAGAIISGGKGDAGSKT AM++AGI VSPSPARLGHTLAE LK
Sbjct: 241 VTAPPGRRMGHAGAIISGGKGDAGSKTDAMKSAGITVSPSPARLGHTLAEKLK 293


>ref|YP_001989223.1| succinyl-CoA synthetase subunit alpha [Rhodopseudomonas palustris
           TIE-1]
 gb|ACE98747.1| succinyl-CoA synthetase, alpha subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 294

 Score =  518 bits (1334), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/293 (89%), Positives = 271/293 (92%), Gaps = 10/293 (3%)

Query: 1   MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGGVAPGKGGSTHLNLPVFDTVAEA 60
           MSILID NT+VICQGFTGKNGTFHSEAAIAYGTKMVGG +PGKGGSTHL LPVFDTV EA
Sbjct: 1   MSILIDSNTRVICQGFTGKNGTFHSEAAIAYGTKMVGGTSPGKGGSTHLGLPVFDTVREA 60

Query: 61  RQKTGADASVVYVPPPGAADAICEAIDAEIPLIVCITEGIPVLDMVRVKRSLSGSKSRLI 120
           R KTGADASV+YVPPPGAADAICEAIDAEIPLIVCITEGIPVLDMVRVKRSL+GSKSRLI
Sbjct: 61  RDKTGADASVIYVPPPGAADAICEAIDAEIPLIVCITEGIPVLDMVRVKRSLNGSKSRLI 120

Query: 121 GPNC----------XGIMPANIFKPGSVGIVSRSGTLTYEAVFQTTQEGLGQTTAVGIGG 170
           GPNC           GIMPANIFKPGSVGIVSRSGTLTYEAVFQT+ EGLGQTTAVGIGG
Sbjct: 121 GPNCPGVMTAGECKIGIMPANIFKPGSVGIVSRSGTLTYEAVFQTSAEGLGQTTAVGIGG 180

Query: 171 DPVKGTEFIDVLELFLADEKTKSIVMIGEIGGSAEEDAAQFLKDEAKRGRKKPMVGFIAG 230
           DPVKGTEFIDVLE+FLAD+KT+SI+MIGEIGGSAEEDAAQFL DEAKRGRKKPMVGFIAG
Sbjct: 181 DPVKGTEFIDVLEMFLADDKTESIIMIGEIGGSAEEDAAQFLIDEAKRGRKKPMVGFIAG 240

Query: 231 VTAPPGRRMGHAGAIISGGKGDAGSKTAAMEAAGIKVSPSPARLGHTLAEMLK 283
           VTAPPGRRMGHAGAIISGGKGDA SKTAAMEAAGI VSPSPARLG TLAE LK
Sbjct: 241 VTAPPGRRMGHAGAIISGGKGDAASKTAAMEAAGITVSPSPARLGKTLAEKLK 293


>ref|YP_004106822.1| succinyl-CoA synthetase subunit alpha [Rhodopseudomonas palustris
           DX-1]
 gb|ADU42089.1| succinyl-CoA synthetase, alpha subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 294

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/293 (89%), Positives = 271/293 (92%), Gaps = 10/293 (3%)

Query: 1   MSILIDKNTKVICQGFTGKNGTFHSEAAIAYGTKMVGGVAPGKGGSTHLNLPVFDTVAEA 60
           MSILID NT+VICQGFTGKNGTFHSEAAIAYGTKMVGG +PGKGGSTHL LPVFDTV EA
Sbjct: 1   MSILIDSNTRVICQGFTGKNGTFHSEAAIAYGTKMVGGTSPGKGGSTHLGLPVFDTVREA 60

Query: 61  RQKTGADASVVYVPPPGAADAICEAIDAEIPLIVCITEGIPVLDMVRVKRSLSGSKSRLI 120
           R+KTGADASV+YVPPPGAADAICEAIDAEIPLIVCITEGIPVLDMVRVKRSL+GSKSRLI
Sbjct: 61  REKTGADASVIYVPPPGAADAICEAIDAEIPLIVCITEGIPVLDMVRVKRSLNGSKSRLI 120

Query: 121 GPNC----------XGIMPANIFKPGSVGIVSRSGTLTYEAVFQTTQEGLGQTTAVGIGG 170
           GPNC           GIMPANIFKPGSVGIVSRSGTLTYEAVFQT+ EGLGQTTAVGIGG
Sbjct: 121 GPNCPGVMTAGECKIGIMPANIFKPGSVGIVSRSGTLTYEAVFQTSAEGLGQTTAVGIGG 180

Query: 171 DPVKGTEFIDVLELFLADEKTKSIVMIGEIGGSAEEDAAQFLKDEAKRGRKKPMVGFIAG 230
           DPVKGTEFIDVLE+FLAD+KT+SI+MIGEIGGSAEEDAAQFL DEAKRGRKKP VGFIAG
Sbjct: 181 DPVKGTEFIDVLEMFLADDKTESIIMIGEIGGSAEEDAAQFLIDEAKRGRKKPTVGFIAG 240

Query: 231 VTAPPGRRMGHAGAIISGGKGDAGSKTAAMEAAGIKVSPSPARLGHTLAEMLK 283
           VTAPPGRRMGHAGAIISGGKGDA SKTAAMEAAGI VSPSPARLG TLAE LK
Sbjct: 241 VTAPPGRRMGHAGAIISGGKGDAASKTAAMEAAGITVSPSPARLGKTLAEKLK 293