BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0023.p         (398 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001236586.1| succinyl-CoA synthetase subunit beta [Bradyr...   739   0.0  
ref|YP_001202598.1| succinyl-CoA synthetase subunit beta [Bradyr...   735   0.0  
ref|NP_767095.1| succinyl-CoA synthetase subunit beta [Bradyrhiz...   711   0.0  
ref|YP_575894.1| succinyl-CoA synthetase subunit beta [Nitrobact...   697   0.0  
ref|ZP_01044694.1| succinyl-CoA synthetase subunit beta [Nitroba...   694   0.0  

>ref|YP_001236586.1| succinyl-CoA synthetase subunit beta [Bradyrhizobium sp. BTAi1]
 sp|A5E936.1|SUCC_BRASB RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit beta;
           AltName: Full=Succinyl-CoA synthetase subunit beta;
           Short=SCS-beta
 gb|ABQ32680.1| succinyl-CoA synthetase (ADP-forming) beta subunit [Bradyrhizobium
           sp. BTAi1]
          Length = 398

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/398 (91%), Positives = 384/398 (96%)

Query: 1   MNIHEYQAKALLHEFGVPISRGVPVLKPEEADAAAKQLPGPIWVVKSQIHAGGRGKGKFK 60
           MNIHEYQAKALLHEFGVPIS+GVPVL+PE++DAAAK L GP+WVVKSQIHAGGRGKGKFK
Sbjct: 1   MNIHEYQAKALLHEFGVPISKGVPVLRPEDSDAAAKALGGPVWVVKSQIHAGGRGKGKFK 60

Query: 61  EASAGDKGGVRIAKSAAEVAEFAKQMLGATLVTVQTGPHGKQVNRLYIEEGSDIDKEFYL 120
           EASAGDKGGVR+AKS  EV  FAKQMLGATLVTVQTGP GKQVNRLYIE+GSDIDKEFYL
Sbjct: 61  EASAGDKGGVRLAKSIDEVNAFAKQMLGATLVTVQTGPDGKQVNRLYIEDGSDIDKEFYL 120

Query: 121 SILVNRETSEVSFVVSTEGGVNIEEVAHSTPEKIVSFSVDPATGIMPHHGRTVAEALKLK 180
           S+LV+RETS+V+FVVSTEGGVNIE+VAHSTPEKI++FSVDPATG+MPHHGR VA+ALKL 
Sbjct: 121 SLLVDRETSKVAFVVSTEGGVNIEDVAHSTPEKIITFSVDPATGVMPHHGRAVAKALKLS 180

Query: 181 GDLAKQAEKLTSQLYAAFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNALYRHPDVV 240
           GDLAKQAEKLT QLY AFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNAL++HP+VV
Sbjct: 181 GDLAKQAEKLTIQLYTAFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNALFKHPEVV 240

Query: 241 ALRDETEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVG 300
           ALRDETEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVG
Sbjct: 241 ALRDETEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVG 300

Query: 301 GGASVEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKQVGLKVPLVVRLE 360
           GGAS EKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVK+VGLKVPLVVRLE
Sbjct: 301 GGASKEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKEVGLKVPLVVRLE 360

Query: 361 GTNVEQGKKIIRESGLNVLPADNLDDAAQKIVKAVKGG 398
           GTNV+ GKKII ESGLNVLPADNLDDAAQKIVKAVKGG
Sbjct: 361 GTNVDLGKKIISESGLNVLPADNLDDAAQKIVKAVKGG 398


>ref|YP_001202598.1| succinyl-CoA synthetase subunit beta [Bradyrhizobium sp. ORS 278]
 sp|A4YKC6.1|SUCC_BRASO RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit beta;
           AltName: Full=Succinyl-CoA synthetase subunit beta;
           Short=SCS-beta
 emb|CAL74352.1| succinyl-CoA synthetase, beta subunit [Bradyrhizobium sp. ORS 278]
          Length = 398

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/398 (90%), Positives = 383/398 (96%)

Query: 1   MNIHEYQAKALLHEFGVPISRGVPVLKPEEADAAAKQLPGPIWVVKSQIHAGGRGKGKFK 60
           MNIHEYQAKALLHEFGVPIS+GVPVL+PE+ADAAAK L GP+WVVKSQIHAGGRGKGKFK
Sbjct: 1   MNIHEYQAKALLHEFGVPISKGVPVLRPEDADAAAKTLGGPVWVVKSQIHAGGRGKGKFK 60

Query: 61  EASAGDKGGVRIAKSAAEVAEFAKQMLGATLVTVQTGPHGKQVNRLYIEEGSDIDKEFYL 120
           EASAGDKGGVR+AKS  EV  FA+QMLGATLVTVQTGP GKQVNRLYIE+GSDIDKEFYL
Sbjct: 61  EASAGDKGGVRLAKSIDEVNTFARQMLGATLVTVQTGPDGKQVNRLYIEDGSDIDKEFYL 120

Query: 121 SILVNRETSEVSFVVSTEGGVNIEEVAHSTPEKIVSFSVDPATGIMPHHGRTVAEALKLK 180
           S+LV+RETS+V+FVVSTEGGVNIE+VAH TPEKIV+FSVDPATG+M HHGR VA+ALKL 
Sbjct: 121 SLLVDRETSKVAFVVSTEGGVNIEDVAHETPEKIVTFSVDPATGVMGHHGRAVAKALKLS 180

Query: 181 GDLAKQAEKLTSQLYAAFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNALYRHPDVV 240
           GDLAKQAEKLT+QLY AFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNAL++HP+VV
Sbjct: 181 GDLAKQAEKLTTQLYNAFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNALFKHPEVV 240

Query: 241 ALRDETEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVG 300
           ALRDETEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVG
Sbjct: 241 ALRDETEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVG 300

Query: 301 GGASVEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKQVGLKVPLVVRLE 360
           GGAS EKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVK+VGLKVPLVVRLE
Sbjct: 301 GGASKEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKEVGLKVPLVVRLE 360

Query: 361 GTNVEQGKKIIRESGLNVLPADNLDDAAQKIVKAVKGG 398
           GTNV+ GKKII ESGLNVLPADNLDDAAQKIVKAVKGG
Sbjct: 361 GTNVDLGKKIISESGLNVLPADNLDDAAQKIVKAVKGG 398


>ref|NP_767095.1| succinyl-CoA synthetase subunit beta [Bradyrhizobium japonicum USDA
           110]
 sp|Q89X60.1|SUCC_BRAJA RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit beta;
           AltName: Full=Succinyl-CoA synthetase subunit beta;
           Short=SCS-beta
 dbj|BAC45720.1| succinyl-CoA synthetase beta chain [Bradyrhizobium japonicum USDA
           110]
          Length = 398

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/398 (89%), Positives = 379/398 (95%)

Query: 1   MNIHEYQAKALLHEFGVPISRGVPVLKPEEADAAAKQLPGPIWVVKSQIHAGGRGKGKFK 60
           MNIHEYQAKALL EFGVPIS+GVPVLK  +A+AAAK LPGP++VVKSQIHAGGRGKGKFK
Sbjct: 1   MNIHEYQAKALLGEFGVPISKGVPVLKAADAEAAAKALPGPVYVVKSQIHAGGRGKGKFK 60

Query: 61  EASAGDKGGVRIAKSAAEVAEFAKQMLGATLVTVQTGPHGKQVNRLYIEEGSDIDKEFYL 120
           EASAGDKGGVRIAKSAAEV+EFAKQMLGATLVT+QTGP GKQVNRLYIE+GSDIDKEFYL
Sbjct: 61  EASAGDKGGVRIAKSAAEVSEFAKQMLGATLVTIQTGPAGKQVNRLYIEDGSDIDKEFYL 120

Query: 121 SILVNRETSEVSFVVSTEGGVNIEEVAHSTPEKIVSFSVDPATGIMPHHGRTVAEALKLK 180
           S+LV+RETS VSFVVSTEGGVNIE+VAH+TPEKIV+FSVDPATGIM HHGRTVA ALKL 
Sbjct: 121 SLLVDRETSRVSFVVSTEGGVNIEDVAHNTPEKIVTFSVDPATGIMGHHGRTVANALKLS 180

Query: 181 GDLAKQAEKLTSQLYAAFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNALYRHPDVV 240
           GDLAKQAEKLT+QLYAAFVAKDM+MLEINPLVVTKQGQLRVLDAKVSFD NAL+RHP+V+
Sbjct: 181 GDLAKQAEKLTAQLYAAFVAKDMSMLEINPLVVTKQGQLRVLDAKVSFDDNALFRHPEVL 240

Query: 241 ALRDETEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVG 300
           ALRDETEEDAKEIEASKYDLNYV LDG IGCMVNGAGLAMATMDIIKLYGM PANFLDVG
Sbjct: 241 ALRDETEEDAKEIEASKYDLNYVTLDGNIGCMVNGAGLAMATMDIIKLYGMAPANFLDVG 300

Query: 301 GGASVEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKQVGLKVPLVVRLE 360
           G AS EKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGV AAV++VGL VPLVVRLE
Sbjct: 301 GSASKEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVTAAVREVGLSVPLVVRLE 360

Query: 361 GTNVEQGKKIIRESGLNVLPADNLDDAAQKIVKAVKGG 398
           GTNVE GKKII ESGLNV+PADNLDDAAQKIVKAVKGG
Sbjct: 361 GTNVELGKKIILESGLNVVPADNLDDAAQKIVKAVKGG 398


>ref|YP_575894.1| succinyl-CoA synthetase subunit beta [Nitrobacter hamburgensis X14]
 sp|Q1QQR3.1|SUCC_NITHX RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit beta;
           AltName: Full=Succinyl-CoA synthetase subunit beta;
           Short=SCS-beta
 gb|ABE61434.1| succinyl-CoA synthetase (ADP-forming) beta subunit [Nitrobacter
           hamburgensis X14]
          Length = 397

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/397 (87%), Positives = 373/397 (93%)

Query: 1   MNIHEYQAKALLHEFGVPISRGVPVLKPEEADAAAKQLPGPIWVVKSQIHAGGRGKGKFK 60
           MNIHEYQAKALL EFGVP+SRGVPVLK  EA+AAA+ L GP+WVVKSQIHAGGRGKGKFK
Sbjct: 1   MNIHEYQAKALLREFGVPVSRGVPVLKASEAEAAAETLGGPVWVVKSQIHAGGRGKGKFK 60

Query: 61  EASAGDKGGVRIAKSAAEVAEFAKQMLGATLVTVQTGPHGKQVNRLYIEEGSDIDKEFYL 120
           EASAGDKGGVR+AKS  EV +FA QMLGATLVTVQTGP GKQVNRLYIEEGSDIDKEFYL
Sbjct: 61  EASAGDKGGVRLAKSIDEVKQFASQMLGATLVTVQTGPAGKQVNRLYIEEGSDIDKEFYL 120

Query: 121 SILVNRETSEVSFVVSTEGGVNIEEVAHSTPEKIVSFSVDPATGIMPHHGRTVAEALKLK 180
           S LV+RETS V+FVVSTEGGVNIE+VAH++PEKIVSFSVDPATG+M HHGRTVA+AL L+
Sbjct: 121 SALVDRETSRVAFVVSTEGGVNIEDVAHTSPEKIVSFSVDPATGVMSHHGRTVAKALGLR 180

Query: 181 GDLAKQAEKLTSQLYAAFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNALYRHPDVV 240
           GDL KQAEKL +QLY AF+AKDMA+LEINPLVVT+QG+LRVLDAKVSFD NALYRHPD V
Sbjct: 181 GDLGKQAEKLVAQLYNAFIAKDMALLEINPLVVTRQGELRVLDAKVSFDDNALYRHPDAV 240

Query: 241 ALRDETEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVG 300
           ALRDE+EEDAKEIEAS++DL+YVALDG IGCMVNGAGLAMATMDIIKLYGM PANFLDVG
Sbjct: 241 ALRDESEEDAKEIEASRFDLSYVALDGQIGCMVNGAGLAMATMDIIKLYGMSPANFLDVG 300

Query: 301 GGASVEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKQVGLKVPLVVRLE 360
           GGA+ +KVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKQVGL VPLVVRLE
Sbjct: 301 GGATKDKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKQVGLNVPLVVRLE 360

Query: 361 GTNVEQGKKIIRESGLNVLPADNLDDAAQKIVKAVKG 397
           GTNV+ GKKIIRESGLNVLPAD+LDDAAQKIVKAVKG
Sbjct: 361 GTNVDAGKKIIRESGLNVLPADDLDDAAQKIVKAVKG 397


>ref|ZP_01044694.1| succinyl-CoA synthetase subunit beta [Nitrobacter sp. Nb-311A]
 gb|EAQ37475.1| succinyl-CoA synthetase subunit beta [Nitrobacter sp. Nb-311A]
          Length = 399

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/397 (84%), Positives = 367/397 (92%)

Query: 1   MNIHEYQAKALLHEFGVPISRGVPVLKPEEADAAAKQLPGPIWVVKSQIHAGGRGKGKFK 60
           MNIHEYQAKALL EFGVP+SRGVP LK  EA+AAA  L GP+WVVKSQIHAGGRGKG FK
Sbjct: 1   MNIHEYQAKALLREFGVPVSRGVPALKASEAEAAAHTLGGPVWVVKSQIHAGGRGKGTFK 60

Query: 61  EASAGDKGGVRIAKSAAEVAEFAKQMLGATLVTVQTGPHGKQVNRLYIEEGSDIDKEFYL 120
           E++AGDKGGVR+A+S  EV +FA QMLGATLVT QTGP GKQVNRLYIEEGSDIDKEFYL
Sbjct: 61  ESAAGDKGGVRLARSIDEVKQFAGQMLGATLVTAQTGPAGKQVNRLYIEEGSDIDKEFYL 120

Query: 121 SILVNRETSEVSFVVSTEGGVNIEEVAHSTPEKIVSFSVDPATGIMPHHGRTVAEALKLK 180
           S LV+RETS +SFVVSTEGG+NIEEVAH TPEKIV+FSVDP TG+M HHGRT A+AL L+
Sbjct: 121 SALVDRETSRISFVVSTEGGMNIEEVAHKTPEKIVTFSVDPVTGVMGHHGRTAAKALGLR 180

Query: 181 GDLAKQAEKLTSQLYAAFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNALYRHPDVV 240
           GDL KQAEKL +QLY AF+AKDMAMLEINPLVVTKQG+LRVLDAK+SFDSNALYRH +VV
Sbjct: 181 GDLGKQAEKLVAQLYNAFIAKDMAMLEINPLVVTKQGELRVLDAKISFDSNALYRHSEVV 240

Query: 241 ALRDETEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVG 300
           ALRDE+EEDAKEI+AS+YDL+YVALDG IGCMVNGAGLAMATMDIIKLYGM PANFLDVG
Sbjct: 241 ALRDESEEDAKEIKASRYDLSYVALDGQIGCMVNGAGLAMATMDIIKLYGMSPANFLDVG 300

Query: 301 GGASVEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKQVGLKVPLVVRLE 360
           GGA+ +KVAAAFKIITADPNVKGIL+NIFGGIMKCDVIA+GVVAAVKQVGL VPLVVRLE
Sbjct: 301 GGATKDKVAAAFKIITADPNVKGILINIFGGIMKCDVIADGVVAAVKQVGLNVPLVVRLE 360

Query: 361 GTNVEQGKKIIRESGLNVLPADNLDDAAQKIVKAVKG 397
           GTNV+ GKKIIRESGLNVLPAD+LDDAAQKIVKAVKG
Sbjct: 361 GTNVDAGKKIIRESGLNVLPADDLDDAAQKIVKAVKG 397