BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0020.p         (178 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001202595.1| putative 2'-5' RNA ligase [Bradyrhizobium sp...   335   2e-90
ref|YP_001236583.1| putative 2'-5' RNA ligase [Bradyrhizobium sp...   332   1e-89
ref|NP_767098.1| 2'-5' RNA ligase [Bradyrhizobium japonicum USDA...   331   3e-89
ref|YP_530090.1| 2',5' RNA ligase [Rhodopseudomonas palustris Bi...   324   3e-87
ref|YP_575897.1| 2',5' RNA ligase [Nitrobacter hamburgensis X14]...   316   8e-85

>ref|YP_001202595.1| putative 2'-5' RNA ligase [Bradyrhizobium sp. ORS 278]
 emb|CAL74349.1| putative 2'-5' RNA ligase [Bradyrhizobium sp. ORS 278]
          Length = 179

 Score =  335 bits (858), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/178 (90%), Positives = 170/178 (95%)

Query: 1   MPRLFTGLEIPAEIGQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGIWANEIASMLFR 60
           MPRLFTGLEIPAE+GQTLS+LRGGLPGARWIDPENYHVTLRFIGDIDG  ANEIA+ML+R
Sbjct: 1   MPRLFTGLEIPAEVGQTLSTLRGGLPGARWIDPENYHVTLRFIGDIDGASANEIAAMLWR 60

Query: 61  VNRKPFEVKLQGLSSFGGRKPRAVVAAVEPSRPLIELQAELERMMQRMGLDPEGRKFTPH 120
           VNRKPFEV +QGLSSFGGRKPRAVVA + PSRPLIELQAELERMMQR+GLDPEGRKF PH
Sbjct: 61  VNRKPFEVTVQGLSSFGGRKPRAVVANIAPSRPLIELQAELERMMQRIGLDPEGRKFVPH 120

Query: 121 VTLARLHDASSQDVADYLSVRGYFPSRTFMADRFVLFSSRASTGGGPYVVEDSYALCA 178
           VTLARLHDASSQDVADYLSVRGYFPSR FMA+RFVLFSSRASTGGGPYVVED+Y LCA
Sbjct: 121 VTLARLHDASSQDVADYLSVRGYFPSRVFMAERFVLFSSRASTGGGPYVVEDAYDLCA 178


>ref|YP_001236583.1| putative 2'-5' RNA ligase [Bradyrhizobium sp. BTAi1]
 gb|ABQ32677.1| putative 2'-5' RNA ligase [Bradyrhizobium sp. BTAi1]
          Length = 179

 Score =  332 bits (852), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/178 (89%), Positives = 170/178 (95%)

Query: 1   MPRLFTGLEIPAEIGQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGIWANEIASMLFR 60
           MPRLFTGLEIPAE+GQTLS+LRGGLPGARWIDPENYHVTLRFIGDIDG  ANEIA+ML+R
Sbjct: 1   MPRLFTGLEIPAEVGQTLSNLRGGLPGARWIDPENYHVTLRFIGDIDGASANEIAAMLWR 60

Query: 61  VNRKPFEVKLQGLSSFGGRKPRAVVAAVEPSRPLIELQAELERMMQRMGLDPEGRKFTPH 120
           VNRKPFEV +QGLSSFGGRKPRAVVA + PSRPLIELQAELERMMQR+GLDPEGRKF PH
Sbjct: 61  VNRKPFEVTVQGLSSFGGRKPRAVVANIAPSRPLIELQAELERMMQRIGLDPEGRKFVPH 120

Query: 121 VTLARLHDASSQDVADYLSVRGYFPSRTFMADRFVLFSSRASTGGGPYVVEDSYALCA 178
           VTLARLHDASSQDVADYLSVRGYFPSR F+A+RFVLFSSRASTGGGPYVVED+Y LCA
Sbjct: 121 VTLARLHDASSQDVADYLSVRGYFPSRVFVAERFVLFSSRASTGGGPYVVEDAYDLCA 178


>ref|NP_767098.1| 2'-5' RNA ligase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45723.1| 2'-5' RNA ligase [Bradyrhizobium japonicum USDA 110]
          Length = 178

 Score =  331 bits (848), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 156/177 (88%), Positives = 170/177 (96%)

Query: 1   MPRLFTGLEIPAEIGQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGIWANEIASMLFR 60
           MPRLFTGLEIPAEIGQTLS+LRGGLPGARWIDPENYHVTLRFIGDIDG+ ANEIASMLFR
Sbjct: 1   MPRLFTGLEIPAEIGQTLSNLRGGLPGARWIDPENYHVTLRFIGDIDGVSANEIASMLFR 60

Query: 61  VNRKPFEVKLQGLSSFGGRKPRAVVAAVEPSRPLIELQAELERMMQRMGLDPEGRKFTPH 120
           VNRKPFEVK+QGL+SFGGRKPRAVVA + PS+PLIELQAELERMMQR+GL+PEGRKF PH
Sbjct: 61  VNRKPFEVKVQGLTSFGGRKPRAVVATIAPSKPLIELQAELERMMQRIGLNPEGRKFIPH 120

Query: 121 VTLARLHDASSQDVADYLSVRGYFPSRTFMADRFVLFSSRASTGGGPYVVEDSYALC 177
           VTLARLHDA+ +DVADYLS+RGYFPS+ FMA+RFVLFSSRASTGGGPYVVED+Y LC
Sbjct: 121 VTLARLHDATDRDVADYLSLRGYFPSKAFMAERFVLFSSRASTGGGPYVVEDAYELC 177


>ref|YP_530090.1| 2',5' RNA ligase [Rhodopseudomonas palustris BisB18]
 gb|ABD85771.1| 2',5' RNA ligase [Rhodopseudomonas palustris BisB18]
          Length = 178

 Score =  324 bits (831), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/178 (87%), Positives = 168/178 (94%)

Query: 1   MPRLFTGLEIPAEIGQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGIWANEIASMLFR 60
           MPRLFTGLEIPAEIGQTLS+LRGGLPGARWI+PENYHVTLRFIGDIDG+ ANEIASML R
Sbjct: 1   MPRLFTGLEIPAEIGQTLSNLRGGLPGARWINPENYHVTLRFIGDIDGVSANEIASMLVR 60

Query: 61  VNRKPFEVKLQGLSSFGGRKPRAVVAAVEPSRPLIELQAELERMMQRMGLDPEGRKFTPH 120
           +NRKPF+V +QGL SFGG+KPRAVVA+V PSRPLIELQAELER+MQR+GL+PEGRKFTPH
Sbjct: 61  INRKPFDVAVQGLQSFGGKKPRAVVASVVPSRPLIELQAELERLMQRLGLNPEGRKFTPH 120

Query: 121 VTLARLHDASSQDVADYLSVRGYFPSRTFMADRFVLFSSRASTGGGPYVVEDSYALCA 178
           VTLARL DAS+QDVADYLSVRGYFP+R F A RFVLFSSRASTGGGPYVVEDSYAL A
Sbjct: 121 VTLARLRDASNQDVADYLSVRGYFPTRVFTASRFVLFSSRASTGGGPYVVEDSYALSA 178


>ref|YP_575897.1| 2',5' RNA ligase [Nitrobacter hamburgensis X14]
 gb|ABE61437.1| 2',5' RNA ligase [Nitrobacter hamburgensis X14]
          Length = 178

 Score =  316 bits (810), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 154/178 (86%), Positives = 166/178 (93%)

Query: 1   MPRLFTGLEIPAEIGQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGIWANEIASMLFR 60
           MPRLFTGLEIP +IG+TLSSLRGGLPGARWIDPENYH+TLRFIGDIDG  ANEIASMLFR
Sbjct: 1   MPRLFTGLEIPPDIGRTLSSLRGGLPGARWIDPENYHLTLRFIGDIDGASANEIASMLFR 60

Query: 61  VNRKPFEVKLQGLSSFGGRKPRAVVAAVEPSRPLIELQAELERMMQRMGLDPEGRKFTPH 120
           VNRKPFEV L+GLSSFGG+KPRAVVA+VEPS PL+ELQ ELER+M+R GLDPEGRKFTPH
Sbjct: 61  VNRKPFEVTLRGLSSFGGKKPRAVVASVEPSGPLVELQGELERLMRRCGLDPEGRKFTPH 120

Query: 121 VTLARLHDASSQDVADYLSVRGYFPSRTFMADRFVLFSSRASTGGGPYVVEDSYALCA 178
           VTLARL DAS+QDVADYLSVRGYFP+R F A+RFVLFSSRAS GGGPYVVEDSYAL A
Sbjct: 121 VTLARLRDASNQDVADYLSVRGYFPARAFTAERFVLFSSRASVGGGPYVVEDSYALSA 178