BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0016.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_317032.1| hypothetical protein Nwi_0413 [Nitrobacter wino... 452 e-125 ref|YP_001236579.1| putative transport protein [Bradyrhizobium s... 451 e-125 ref|YP_001202591.1| putative transport protein membrane protein ... 448 e-124 ref|NP_767102.1| ABC transporter permease [Bradyrhizobium japoni... 441 e-122 ref|YP_004106814.1| hypothetical protein Rpdx1_0440 [Rhodopseudo... 439 e-121 >ref|YP_317032.1| hypothetical protein Nwi_0413 [Nitrobacter winogradskyi Nb-255] gb|ABA03680.1| Protein of unknown function UPF0005 [Nitrobacter winogradskyi Nb-255] Length = 263 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 236/263 (89%), Positives = 250/263 (95%) Query: 1 MSDLDRNYASPFGRAAGRIDAAAVDAGLRAYMLRIYNYMSIGLAITGLAALGVYMGAVTT 60 MSDLDRNYA+P GRA GR+DAAAVDAGLRAYML+IYNYMSIGLAITGLAALGVYM AVT Sbjct: 1 MSDLDRNYATPLGRADGRVDAAAVDAGLRAYMLKIYNYMSIGLAITGLAALGVYMAAVTG 60 Query: 61 DQSAAVAKFGNAYLTQFGYAMFVSPLKWLFILAPLAMVFVISAGINRLQPATAQLLFWVF 120 D S A AK GNAYLT FGYAMFVSPLKW+FILAPLAMVFVIS GINRL+PATAQ+LFW F Sbjct: 61 DPSGAAAKLGNAYLTPFGYAMFVSPLKWVFILAPLAMVFVISFGINRLKPATAQMLFWAF 120 Query: 121 SALMGLSLSSIFLVYTHTSIVRVFFITAATFGALSLYGYTTKRDMSGMGSFLFMGLIGII 180 SALMGLSLSSIFLVYTHTSIVRVFFITAA+FGALSL+GYTTKRDM+GMGSFLFMGLIG+I Sbjct: 121 SALMGLSLSSIFLVYTHTSIVRVFFITAASFGALSLFGYTTKRDMTGMGSFLFMGLIGVI 180 Query: 181 IASLVNLFLASSALQFIVSVVGVLVFAGLTAWDTQRLKNDYIYGYASQGGVMAERAAITG 240 IASLVNLF+ASSALQF+VSV GVLVFAGLTAWDTQRLKNDYIYGYASQGG +AERAAITG Sbjct: 181 IASLVNLFIASSALQFVVSVAGVLVFAGLTAWDTQRLKNDYIYGYASQGGEIAERAAITG 240 Query: 241 ALSLYLNFINLFTLLLQLLGQRD 263 ALSLYLNFINLFTLLLQLLGQR+ Sbjct: 241 ALSLYLNFINLFTLLLQLLGQRE 263 >ref|YP_001236579.1| putative transport protein [Bradyrhizobium sp. BTAi1] gb|ABQ32673.1| putative transport protein [Bradyrhizobium sp. BTAi1] Length = 263 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 238/263 (90%), Positives = 248/263 (94%) Query: 1 MSDLDRNYASPFGRAAGRIDAAAVDAGLRAYMLRIYNYMSIGLAITGLAALGVYMGAVTT 60 MSDLDRNYASPFGR AGR DAA VDAGLRAYMLRIYNYMSIGLAITGLAALGVYM +VT Sbjct: 1 MSDLDRNYASPFGRVAGRADAATVDAGLRAYMLRIYNYMSIGLAITGLAALGVYMASVTG 60 Query: 61 DQSAAVAKFGNAYLTQFGYAMFVSPLKWLFILAPLAMVFVISAGINRLQPATAQLLFWVF 120 D +A V KFGNAYLTQFGYAMFVSPLKWLFILAPL MVF ISAGINRL P+TAQ+LFWVF Sbjct: 61 DPAAGVFKFGNAYLTQFGYAMFVSPLKWLFILAPLVMVFAISAGINRLAPSTAQILFWVF 120 Query: 121 SALMGLSLSSIFLVYTHTSIVRVFFITAATFGALSLYGYTTKRDMSGMGSFLFMGLIGII 180 SALMG+SLSSIFLVYTHTSIVRVFFITAATFGALSLYGYTTKRDM+GMGSFLFMGLIGI+ Sbjct: 121 SALMGISLSSIFLVYTHTSIVRVFFITAATFGALSLYGYTTKRDMTGMGSFLFMGLIGIV 180 Query: 181 IASLVNLFLASSALQFIVSVVGVLVFAGLTAWDTQRLKNDYIYGYASQGGVMAERAAITG 240 +ASLVNLFLASS LQFIVSVVGV VFAGLTAWDTQRLKN+YIYGYAS GG +AERAAITG Sbjct: 181 LASLVNLFLASSMLQFIVSVVGVFVFAGLTAWDTQRLKNEYIYGYASAGGDIAERAAITG 240 Query: 241 ALSLYLNFINLFTLLLQLLGQRD 263 ALSLYLNFINLFTLLLQLLGQRD Sbjct: 241 ALSLYLNFINLFTLLLQLLGQRD 263 >ref|YP_001202591.1| putative transport protein membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL74345.1| putative transport protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 263 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 237/263 (90%), Positives = 247/263 (93%) Query: 1 MSDLDRNYASPFGRAAGRIDAAAVDAGLRAYMLRIYNYMSIGLAITGLAALGVYMGAVTT 60 MSDL+RNYASPFGR AGR DAA VDAGLRAYMLRIYNYMSIGLAITGLAALGVYM AVT Sbjct: 1 MSDLNRNYASPFGRVAGRADAATVDAGLRAYMLRIYNYMSIGLAITGLAALGVYMAAVTG 60 Query: 61 DQSAAVAKFGNAYLTQFGYAMFVSPLKWLFILAPLAMVFVISAGINRLQPATAQLLFWVF 120 D +A V KFGNAYLTQFGYAMFVSPLKWLFILAPL MVF ISAGINRL P+TAQLLFWVF Sbjct: 61 DPAAGVFKFGNAYLTQFGYAMFVSPLKWLFILAPLVMVFAISAGINRLAPSTAQLLFWVF 120 Query: 121 SALMGLSLSSIFLVYTHTSIVRVFFITAATFGALSLYGYTTKRDMSGMGSFLFMGLIGII 180 SALMG+SLSSIFLVYTHTSIVRVFFITAATFGALSLYGYTTKRDM+G GSFLFMGLIGI+ Sbjct: 121 SALMGVSLSSIFLVYTHTSIVRVFFITAATFGALSLYGYTTKRDMTGFGSFLFMGLIGIV 180 Query: 181 IASLVNLFLASSALQFIVSVVGVLVFAGLTAWDTQRLKNDYIYGYASQGGVMAERAAITG 240 +ASLVNLFLASS LQFIVSV+GV VFAGLTAWDTQRLKN+YIYGYAS GG +AERAAITG Sbjct: 181 LASLVNLFLASSMLQFIVSVIGVFVFAGLTAWDTQRLKNEYIYGYASAGGDIAERAAITG 240 Query: 241 ALSLYLNFINLFTLLLQLLGQRD 263 ALSLYLNFINLFTLLLQLLGQRD Sbjct: 241 ALSLYLNFINLFTLLLQLLGQRD 263 >ref|NP_767102.1| ABC transporter permease [Bradyrhizobium japonicum USDA 110] dbj|BAC45727.1| blr0462 [Bradyrhizobium japonicum USDA 110] Length = 278 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 233/263 (88%), Positives = 246/263 (93%) Query: 1 MSDLDRNYASPFGRAAGRIDAAAVDAGLRAYMLRIYNYMSIGLAITGLAALGVYMGAVTT 60 MSDLDRNYASPFGRAAGR+DAA VDAGLRAYMLRIYNYMSIGLAITGLAALGVYM AVT Sbjct: 16 MSDLDRNYASPFGRAAGRVDAATVDAGLRAYMLRIYNYMSIGLAITGLAALGVYMAAVTD 75 Query: 61 DQSAAVAKFGNAYLTQFGYAMFVSPLKWLFILAPLAMVFVISAGINRLQPATAQLLFWVF 120 + + G +LT FGYAMFVSPLKWLF+LAPLAMVFVISAGINRL P+TAQ+LFWVF Sbjct: 76 VPTPEAVRVGKLFLTPFGYAMFVSPLKWLFMLAPLAMVFVISAGINRLAPSTAQILFWVF 135 Query: 121 SALMGLSLSSIFLVYTHTSIVRVFFITAATFGALSLYGYTTKRDMSGMGSFLFMGLIGII 180 SALMG+SLSSIFLV+THTSIVRVFFITAATFGALSLYGYTTKRD++GMGSFLFMGLIGII Sbjct: 136 SALMGISLSSIFLVFTHTSIVRVFFITAATFGALSLYGYTTKRDLTGMGSFLFMGLIGII 195 Query: 181 IASLVNLFLASSALQFIVSVVGVLVFAGLTAWDTQRLKNDYIYGYASQGGVMAERAAITG 240 IASLVNLFLASS LQFIVSVVGVLVFAGLTAWDTQRLKNDYIYGYA+ GG +AERAAITG Sbjct: 196 IASLVNLFLASSMLQFIVSVVGVLVFAGLTAWDTQRLKNDYIYGYAAAGGDIAERAAITG 255 Query: 241 ALSLYLNFINLFTLLLQLLGQRD 263 ALSLYLNFINLFTLLLQLLGQRD Sbjct: 256 ALSLYLNFINLFTLLLQLLGQRD 278 >ref|YP_004106814.1| hypothetical protein Rpdx1_0440 [Rhodopseudomonas palustris DX-1] gb|ADU42081.1| protein of unknown function UPF0005 [Rhodopseudomonas palustris DX-1] Length = 263 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/263 (87%), Positives = 244/263 (92%) Query: 1 MSDLDRNYASPFGRAAGRIDAAAVDAGLRAYMLRIYNYMSIGLAITGLAALGVYMGAVTT 60 MSDLDRNYASPFGRAAGR++ A VDAGLRAYMLRIYNYM+IGLAITGLAALGVYMGAVTT Sbjct: 1 MSDLDRNYASPFGRAAGRVETATVDAGLRAYMLRIYNYMTIGLAITGLAALGVYMGAVTT 60 Query: 61 DQSAAVAKFGNAYLTQFGYAMFVSPLKWLFILAPLAMVFVISAGINRLQPATAQLLFWVF 120 D AA A+ GN LT FG AMFVSPLKW+FILAPLAMVFVIS GINRL+PATAQLLFW F Sbjct: 61 DAGAAAARVGNTMLTSFGVAMFVSPLKWVFILAPLAMVFVISFGINRLKPATAQLLFWAF 120 Query: 121 SALMGLSLSSIFLVYTHTSIVRVFFITAATFGALSLYGYTTKRDMSGMGSFLFMGLIGII 180 SALMG+SLSSIFLVYTHTSIVRVFFITAA FGALSLYGYTTKRDM+GMGSFL MGLIG++ Sbjct: 121 SALMGISLSSIFLVYTHTSIVRVFFITAAAFGALSLYGYTTKRDMTGMGSFLIMGLIGVV 180 Query: 181 IASLVNLFLASSALQFIVSVVGVLVFAGLTAWDTQRLKNDYIYGYASQGGVMAERAAITG 240 IASLVNLF+ASS LQFIVSVVGVLVFAGLTAWDTQRLKNDYIYG S GG +AERAAITG Sbjct: 181 IASLVNLFVASSMLQFIVSVVGVLVFAGLTAWDTQRLKNDYIYGAGSMGGEVAERAAITG 240 Query: 241 ALSLYLNFINLFTLLLQLLGQRD 263 ALSLYLNFINLFTLLLQLLGQ++ Sbjct: 241 ALSLYLNFINLFTLLLQLLGQKE 263