BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0015.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_316944.1| hypothetical protein Nwi_0325 [Nitrobacter wino...   205   2e-51
ref|YP_575757.1| hypothetical protein Nham_0406 [Nitrobacter ham...   204   2e-51
ref|YP_567666.1| hypothetical protein RPD_0527 [Rhodopseudomonas...   202   2e-50
ref|NP_767104.1| hypothetical protein bll0464 [Bradyrhizobium ja...   199   1e-49
ref|YP_483911.1| hypothetical protein RPB_0289 [Rhodopseudomonas...   197   3e-49

>ref|YP_316944.1| hypothetical protein Nwi_0325 [Nitrobacter winogradskyi Nb-255]
 gb|ABA03592.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 123

 Score =  205 bits (522), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 109/123 (88%)

Query: 1   MSLISEDTDPSGSRAAARTAAATPQPNRVTFDRLELNRILNLYGRMVADGEWRDYAIDFL 60
           MS + +D DP GSR   R  A  P P RVTF+RLELNRILNLYGRMVADG+WRDYAIDFL
Sbjct: 1   MSSLPDDLDPGGSRVTERDPAPVPIPGRVTFNRLELNRILNLYGRMVADGDWRDYAIDFL 60

Query: 61  KDRAVFSVFRRASEVPIYRIEKDPRLARKQGMYSVISATGLILRRGHELERVLLVIDRKL 120
           +DRAVFSVFRRASEVPIYRIEKDPRLARKQG YSVISA+GLILRRGHEL+RVLLVIDRKL
Sbjct: 61  RDRAVFSVFRRASEVPIYRIEKDPRLARKQGAYSVISASGLILRRGHELDRVLLVIDRKL 120

Query: 121 SLV 123
           SLV
Sbjct: 121 SLV 123


>ref|YP_575757.1| hypothetical protein Nham_0406 [Nitrobacter hamburgensis X14]
 gb|ABE61297.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 123

 Score =  204 bits (520), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 111/123 (90%)

Query: 1   MSLISEDTDPSGSRAAARTAAATPQPNRVTFDRLELNRILNLYGRMVADGEWRDYAIDFL 60
           MS +S D DPS +RAA R+ AA P P RVTF RLELNRILNLYGRMVADGEWRDYAIDFL
Sbjct: 1   MSSLSGDIDPSENRAADRSPAALPVPGRVTFTRLELNRILNLYGRMVADGEWRDYAIDFL 60

Query: 61  KDRAVFSVFRRASEVPIYRIEKDPRLARKQGMYSVISATGLILRRGHELERVLLVIDRKL 120
           KDRAVFS+FRRASEVPIYRIEKDPRLARKQG YSV+SA+G +LRRGHEL+RVLLVIDRKL
Sbjct: 61  KDRAVFSIFRRASEVPIYRIEKDPRLARKQGAYSVMSASGRVLRRGHELDRVLLVIDRKL 120

Query: 121 SLV 123
           +LV
Sbjct: 121 ALV 123


>ref|YP_567666.1| hypothetical protein RPD_0527 [Rhodopseudomonas palustris BisB5]
 gb|ABE37765.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 122

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 110/123 (89%), Gaps = 1/123 (0%)

Query: 1   MSLISEDTDPSGSRAAARTAAATPQPNRVTFDRLELNRILNLYGRMVADGEWRDYAIDFL 60
           MS+ISE+ DPS SR A R  AA PQ  RVTF+RLELNRILNLYGRMVADGEWRDYAIDFL
Sbjct: 1   MSVISEEADPSDSRLAERQGAAPPQ-QRVTFNRLELNRILNLYGRMVADGEWRDYAIDFL 59

Query: 61  KDRAVFSVFRRASEVPIYRIEKDPRLARKQGMYSVISATGLILRRGHELERVLLVIDRKL 120
           KD AVFSVFRRASEVPIYRI KDPRLARKQG YSV++A+G ILRRGHEL+RVLLVIDRKL
Sbjct: 60  KDHAVFSVFRRASEVPIYRIVKDPRLARKQGAYSVVAASGQILRRGHELDRVLLVIDRKL 119

Query: 121 SLV 123
           +LV
Sbjct: 120 ALV 122


>ref|NP_767104.1| hypothetical protein bll0464 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45729.1| bll0464 [Bradyrhizobium japonicum USDA 110]
          Length = 123

 Score =  199 bits (506), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/123 (88%), Positives = 114/123 (92%)

Query: 1   MSLISEDTDPSGSRAAARTAAATPQPNRVTFDRLELNRILNLYGRMVADGEWRDYAIDFL 60
           MSL SED DPS  RAAAR  AA  QPN+VTF+RLEL RILNLYGRMVADGEWRDYAIDFL
Sbjct: 1   MSLTSEDADPSEQRAAARPPAANAQPNQVTFNRLELRRILNLYGRMVADGEWRDYAIDFL 60

Query: 61  KDRAVFSVFRRASEVPIYRIEKDPRLARKQGMYSVISATGLILRRGHELERVLLVIDRKL 120
           KDRAVFSV+RRASEVPIYRIEKDPRLARKQGMYSVISATGLILRRGHELERVLLVIDRKL
Sbjct: 61  KDRAVFSVYRRASEVPIYRIEKDPRLARKQGMYSVISATGLILRRGHELERVLLVIDRKL 120

Query: 121 SLV 123
           ++V
Sbjct: 121 AVV 123


>ref|YP_483911.1| hypothetical protein RPB_0289 [Rhodopseudomonas palustris HaA2]
 gb|ABD05000.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 122

 Score =  197 bits (502), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 108/123 (87%), Gaps = 1/123 (0%)

Query: 1   MSLISEDTDPSGSRAAARTAAATPQPNRVTFDRLELNRILNLYGRMVADGEWRDYAIDFL 60
           MS ISE+ DP  SRAA R  AA P   RVTF+RLELNRILNLYGRMVADGEWRDYAIDFL
Sbjct: 1   MSSISEEADPGDSRAAERQGAA-PLQGRVTFNRLELNRILNLYGRMVADGEWRDYAIDFL 59

Query: 61  KDRAVFSVFRRASEVPIYRIEKDPRLARKQGMYSVISATGLILRRGHELERVLLVIDRKL 120
           KD AVFSVFRRASEVPIYRI KDPRLARKQG YSV+SA+G ILRRGH+L+RVLLVIDRKL
Sbjct: 60  KDHAVFSVFRRASEVPIYRIVKDPRLARKQGAYSVVSASGQILRRGHDLDRVLLVIDRKL 119

Query: 121 SLV 123
           +LV
Sbjct: 120 ALV 122