BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0009.p         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_530102.1| heme exporter protein CcmD [Rhodopseudomonas pa...    77   6e-13
ref|ZP_01044479.1| hypothetical protein NB311A_03094 [Nitrobacte...    77   8e-13
ref|YP_002287576.1| heme exporter protein CcmD [Oligotropha carb...    76   1e-12
ref|YP_004106806.1| heme exporter protein CcmD [Rhodopseudomonas...    74   6e-12
ref|YP_001989239.1| heme exporter protein CcmD [Rhodopseudomonas...    73   1e-11

>ref|YP_530102.1| heme exporter protein CcmD [Rhodopseudomonas palustris BisB18]
 gb|ABD85783.1| Heme exporter protein D (CcmD) [Rhodopseudomonas palustris
          BisB18]
          Length = 60

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 1  MALGPYASFIVTSYVLVAAVVLLLIVWIVADYRRQQSRLREIEASGVTRRSGRSAAD 57
          M+LGPYASFIV SY + A VV +LIVW+  DYRRQQ++LR ++A+GV+RRS R+AA+
Sbjct: 2  MSLGPYASFIVLSYAVSALVVAILIVWVALDYRRQQAKLRALDAAGVSRRSKRNAAE 58


>ref|ZP_01044479.1| hypothetical protein NB311A_03094 [Nitrobacter sp. Nb-311A]
 gb|EAQ37260.1| hypothetical protein NB311A_03094 [Nitrobacter sp. Nb-311A]
          Length = 62

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 51/59 (86%)

Query: 1  MALGPYASFIVTSYVLVAAVVLLLIVWIVADYRRQQSRLREIEASGVTRRSGRSAADIR 59
          M LGPYA+FIVTSYV VAAVV  LI+W++ DYRRQ++RLR +EA+G  RRSGRSAAD++
Sbjct: 4  MTLGPYAAFIVTSYVSVAAVVAALILWVIMDYRRQRARLRGLEAAGAIRRSGRSAADVQ 62


>ref|YP_002287576.1| heme exporter protein CcmD [Oligotropha carboxidovorans OM5]
 ref|YP_004634292.1| hypothetical protein OCA5_c33770 [Oligotropha carboxidovorans
          OM5]
 gb|ACI91711.1| heme exporter protein CcmD [Oligotropha carboxidovorans OM5]
 gb|AEI04421.1| hypothetical protein OCA4_c33250 [Oligotropha carboxidovorans
          OM4]
 gb|AEI08051.1| hypothetical protein OCA5_c33770 [Oligotropha carboxidovorans
          OM5]
          Length = 65

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 44/56 (78%)

Query: 2  ALGPYASFIVTSYVLVAAVVLLLIVWIVADYRRQQSRLREIEASGVTRRSGRSAAD 57
          ALGPY  FI TSY LVA VV  LI  ++ DYRRQQ+ LR +EASGVTRRSG++AAD
Sbjct: 3  ALGPYTVFITTSYALVALVVGGLIAAVMIDYRRQQAELRRLEASGVTRRSGKTAAD 58


>ref|YP_004106806.1| heme exporter protein CcmD [Rhodopseudomonas palustris DX-1]
 gb|ADU42073.1| heme exporter protein CcmD [Rhodopseudomonas palustris DX-1]
          Length = 57

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 42/55 (76%)

Query: 3  LGPYASFIVTSYVLVAAVVLLLIVWIVADYRRQQSRLREIEASGVTRRSGRSAAD 57
           G YA FIV+SY   A VVLLLI W+V DYR+Q++RLR++EA G  RRSGRSA D
Sbjct: 2  FGKYADFIVSSYAATAIVVLLLIGWVVLDYRKQKARLRDLEARGAVRRSGRSATD 56


>ref|YP_001989239.1| heme exporter protein CcmD [Rhodopseudomonas palustris TIE-1]
 gb|ACE98763.1| heme exporter protein CcmD [Rhodopseudomonas palustris TIE-1]
          Length = 57

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 42/55 (76%)

Query: 3  LGPYASFIVTSYVLVAAVVLLLIVWIVADYRRQQSRLREIEASGVTRRSGRSAAD 57
           G YA FIV+SY   A VVLLLI W+V DYR+Q++RLR++EA G  RRSGRSA D
Sbjct: 2  FGKYADFIVSSYAATAIVVLLLIGWVVLDYRKQKARLRDLEARGAVRRSGRSAID 56