BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0003.p (379 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767115.1| hypothetical protein blr0475 [Bradyrhizobium ja... 493 e-137 ref|YP_001205783.1| hypothetical protein BRADO3789 [Bradyrhizobi... 429 e-118 ref|YP_001240109.1| hypothetical protein BBta_4141 [Bradyrhizobi... 422 e-116 ref|YP_001207448.1| hypothetical protein BRADO5558 [Bradyrhizobi... 222 8e-56 ref|YP_001241911.1| hypothetical protein BBta_6078 [Bradyrhizobi... 221 2e-55 >ref|NP_767115.1| hypothetical protein blr0475 [Bradyrhizobium japonicum USDA 110] dbj|BAC45740.1| blr0475 [Bradyrhizobium japonicum USDA 110] Length = 369 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 245/363 (67%), Positives = 294/363 (80%) Query: 7 AIVDEVEAAIRAGSADKCLATARRVTSLFLASAGKFNSEQIELFDNVLERLVKTIELRAL 66 +I+DEVE+A+R GSA+K L TARRVT LFL+SAG F+ EQI LFD VLERL+ TIELRA+ Sbjct: 7 SIIDEVESALRIGSAEKGLETARRVTDLFLSSAGSFDDEQIALFDEVLERLIGTIELRAI 66 Query: 67 ADISARMALTDISEQLAPVAQAPPAIIRRLASNDEIRIARPILQESSRLSADDLVEIAQT 126 AD+ AR+AL +IS QLAP+AQAPP++IRRLA+NDEIRIA P+LQES+RL +LV+IA + Sbjct: 67 ADMGARVALAEISAQLAPIAQAPPSVIRRLANNDEIRIAGPVLQESARLDDGELVKIASS 126 Query: 127 KSEQHLLAVAGRWWLKEVVTDALLARRFASVSHRLVSNPGAKVSPGGFAVILAQAEHDPV 186 K E HLLAVAGRWWLKE+VTDALLARR+ SVS RL +NPGA+VS GFAVI+ QAE DP Sbjct: 127 KGEPHLLAVAGRWWLKEIVTDALLARRYPSVSRRLAANPGARVSGNGFAVIVGQAEGDPE 186 Query: 187 LAVQTGIRADLPSELRLQLLHDATEEVRARLLERAPAHLFEEIRNAIAAVAAGVERDMAR 246 LAV G+R DLPSELR QLL AT+ VR RLL RAP HLFEEI+ AIAAV AGV R+M+ Sbjct: 187 LAVSVGVRVDLPSELRRQLLRSATDTVRTRLLSRAPPHLFEEIQGAIAAVTAGVTREMSG 246 Query: 247 VRDFAAARRHIAKLKDAGDLNEAALLGLARQRMYEETIVALADLAHASIEVIRPLMQSLR 306 VRDF A+R IA LK +G LNEA L A+QR YEET+ ALA L+ +++EVIRPLMQSLR Sbjct: 247 VRDFEGAKRAIAGLKASGQLNEATLFSFAKQRRYEETVAALAVLSQSTVEVIRPLMQSLR 306 Query: 307 SEGLLVPCRVAGLSWETTAAVMECRYSTGSMGPVELANARSQFTRLTHANADRLLRFWQV 366 +GLLVPC+ A LSWETTAAV+E R++TG+M P +LA A+ + R+T NA R LRFWQV Sbjct: 307 EDGLLVPCKAAQLSWETTAAVLESRFATGAMKPADLARAQGHYARMTPENARRTLRFWQV 366 Query: 367 RAS 369 RAS Sbjct: 367 RAS 369 >ref|YP_001205783.1| hypothetical protein BRADO3789 [Bradyrhizobium sp. ORS 278] emb|CAL77558.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 375 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 214/372 (57%), Positives = 273/372 (73%) Query: 1 MLNDGQAIVDEVEAAIRAGSADKCLATARRVTSLFLASAGKFNSEQIELFDNVLERLVKT 60 M N +I DEV+AAI GSA++C A RV SLF+ASAG + EQ LF +V ERLV T Sbjct: 1 MPNPHLSIADEVQAAIATGSAERCSGVAERVASLFIASAGNMDVEQHALFADVFERLVNT 60 Query: 61 IELRALADISARMALTDISEQLAPVAQAPPAIIRRLASNDEIRIARPILQESSRLSADDL 120 IELRALAD+ AR+AL ++S QLAPV Q P +IRRLA +D+I +A P+L ES RLS DDL Sbjct: 61 IELRALADVGARIALAELSAQLAPVPQTPVTVIRRLAHHDDIAVAGPVLSESPRLSNDDL 120 Query: 121 VEIAQTKSEQHLLAVAGRWWLKEVVTDALLARRFASVSHRLVSNPGAKVSPGGFAVILAQ 180 +EIA + E+HL+A+AGRWWL+EVVTDALLARRF SVS +L+ NPGA++S GF++ILAQ Sbjct: 121 IEIAGSCGERHLIAIAGRWWLQEVVTDALLARRFPSVSRKLMKNPGARISAAGFSIILAQ 180 Query: 181 AEHDPVLAVQTGIRADLPSELRLQLLHDATEEVRARLLERAPAHLFEEIRNAIAAVAAGV 240 A DP LA+ TGIRADLP+ LR LL A+E V+ RLL AP HL+EEIR AIA+ A Sbjct: 181 AAGDPELAIATGIRADLPAALRRALLQGASEAVKTRLLASAPPHLYEEIRGAIASATADT 240 Query: 241 ERDMARVRDFAAARRHIAKLKDAGDLNEAALLGLARQRMYEETIVALADLAHASIEVIRP 300 +RDM+R RDF A+ I +L+ +G LNEA L ARQR Y ETI A+A+LA SIE++RP Sbjct: 241 DRDMSRCRDFGGAKLTIGQLRQSGKLNEAMLFDFARQRRYTETIAAIAELAKCSIELVRP 300 Query: 301 LMQSLRSEGLLVPCRVAGLSWETTAAVMECRYSTGSMGPVELANARSQFTRLTHANADRL 360 LMQSLRS+G+LVPC+ AGLSW T AA+++ R+ +G+ P EL ++++ LT A RL Sbjct: 301 LMQSLRSDGILVPCKAAGLSWTTVAAILDSRFVSGATKPDELTKLKAKYLELTLDEATRL 360 Query: 361 LRFWQVRASQPA 372 ++ W VRA A Sbjct: 361 IKLWNVRAGSSA 372 >ref|YP_001240109.1| hypothetical protein BBta_4141 [Bradyrhizobium sp. BTAi1] gb|ABQ36203.1| hypothetical protein BBta_4141 [Bradyrhizobium sp. BTAi1] Length = 375 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 218/366 (59%), Positives = 276/366 (75%) Query: 8 IVDEVEAAIRAGSADKCLATARRVTSLFLASAGKFNSEQIELFDNVLERLVKTIELRALA 67 I DEV+AAI GSA++C A RV SLF+ASAG + EQ LF +V ERLV TIELRALA Sbjct: 8 IADEVQAAIATGSAERCSVVAERVASLFIASAGNMDIEQHALFADVFERLVNTIELRALA 67 Query: 68 DISARMALTDISEQLAPVAQAPPAIIRRLASNDEIRIARPILQESSRLSADDLVEIAQTK 127 D+SAR+AL ++S QLAPV QAP A+IRRLA +++I +A P+L ES RLS DL+EIA T+ Sbjct: 68 DVSARIALAELSAQLAPVPQAPVAVIRRLARHEDIAVAEPVLAESPRLSNADLIEIANTR 127 Query: 128 SEQHLLAVAGRWWLKEVVTDALLARRFASVSHRLVSNPGAKVSPGGFAVILAQAEHDPVL 187 SEQHL+A+AGRWWL+EVVTDALL RRF SVS +L+ NPGA++S GF++IL+QA +DP L Sbjct: 128 SEQHLIAIAGRWWLQEVVTDALLGRRFPSVSRKLMKNPGARISAAGFSIILSQAINDPEL 187 Query: 188 AVQTGIRADLPSELRLQLLHDATEEVRARLLERAPAHLFEEIRNAIAAVAAGVERDMARV 247 + TGIRADLP+ LR LL ATE V+ARLL AP HL+EEIR+AIAA AAG ERDMAR Sbjct: 188 TIATGIRADLPAGLRRTLLQSATEAVKARLLASAPPHLYEEIRSAIAAAAAGAERDMARQ 247 Query: 248 RDFAAARRHIAKLKDAGDLNEAALLGLARQRMYEETIVALADLAHASIEVIRPLMQSLRS 307 RDF +A+ +L+ G LNE LL ARQR Y ET A+A+LA SI+++RPLMQSLRS Sbjct: 248 RDFGSAKAAFGQLRQTGRLNETMLLDFARQRRYVETTAAIAELAKCSIDLVRPLMQSLRS 307 Query: 308 EGLLVPCRVAGLSWETTAAVMECRYSTGSMGPVELANARSQFTRLTHANADRLLRFWQVR 367 +G+LVPC+ AGLSW+T A+++ R+ +G+ P ELA ++++ LT A R L W VR Sbjct: 308 DGILVPCKAAGLSWDTVVAILDSRFVSGATPPDELAKLKTKYRALTADEAQRTLNLWNVR 367 Query: 368 ASQPAK 373 + PAK Sbjct: 368 TAAPAK 373 >ref|YP_001207448.1| hypothetical protein BRADO5558 [Bradyrhizobium sp. ORS 278] emb|CAL79231.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 374 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 207/362 (57%), Gaps = 10/362 (2%) Query: 6 QAIVDEVEAAIRAGSADKCLATARRVTSLFLASAGKFNSEQIELFDNVLERLVKTIELRA 65 +I+ E+E A+R+GS++K + T R+VT+LFL + + +QI++FDNVL LV +E RA Sbjct: 16 HSIISELEDAVRSGSSEKRVNTLRQVTNLFLHDGERLSEDQIKVFDNVLCMLVSRVETRA 75 Query: 66 LADISARMALTDISEQLAPVAQAPPAIIRRLASNDEIRIARPILQESSRLSADDLVEIAQ 125 A++S + LAPV AP +I++LA +DEI +A +L S+RL+ LVE+A Sbjct: 76 RAELS---------KHLAPVDYAPIDVIQQLARDDEISVAESVLMHSTRLTEHTLVEVAT 126 Query: 126 TKSEQHLLAVAGRWWLKEVVTDALLARRFASVSHRLVSNPGAKVSPGGFAVILAQAEHDP 185 TK + HL+A++ R L E VTD ++ R V +L +N A+ S G++ ++A AE D Sbjct: 127 TKGQDHLMAISSRPHLTEAVTDIIVDRGERRVIRKLANNQTARFSETGYSGMMAHAEDDD 186 Query: 186 VLAVQTGIRADLPSELRLQLLHDATEEVRARLLERAPAHLFEEIRNAIAAVAAGVERDMA 245 L G+R DLPS+ LL AT+ VRA+L+ AP L +EI+ + +A D Sbjct: 187 ELTEIIGLRVDLPSKHLRDLLRRATDSVRAKLMASAPPALQQEIKKVLKGIADAARSDGG 246 Query: 246 RV-RDFAAARRHIAKLKDAGDLNEAALLGLARQRMYEETIVALADLAHASIEVIRPLMQS 304 + RDF A + ++K +LN++A+ A R + E AL L + E++ +++ Sbjct: 247 LIGRDFTLAEEAVKRMKGLNELNDSAIGFFAETRRFGEVAAALGLLNNVPTEMMAKVLEG 306 Query: 305 LRSEGLLVPCRVAGLSWETTAAVMECRYSTGSMGPVELANARSQFTRLTHANADRLLRFW 364 R++ +L+PCR AGLSW A ++ R ++ L A + RL+ A R LRFW Sbjct: 307 PRTDIVLIPCRAAGLSWSVVAKILTHRPIKHAIDSETLKLAERDYGRLSLDTAQRTLRFW 366 Query: 365 QV 366 V Sbjct: 367 MV 368 >ref|YP_001241911.1| hypothetical protein BBta_6078 [Bradyrhizobium sp. BTAi1] gb|ABQ38005.1| hypothetical protein BBta_6078 [Bradyrhizobium sp. BTAi1] Length = 392 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 204/362 (56%), Gaps = 10/362 (2%) Query: 6 QAIVDEVEAAIRAGSADKCLATARRVTSLFLASAGKFNSEQIELFDNVLERLVKTIELRA 65 +I+ E+E A+R GS++K + T R+VT+LFL + + EQI++FDNVL LV +E RA Sbjct: 34 HSIISELEDAVRGGSSEKRVHTLRQVTNLFLHDGERLSEEQIKVFDNVLCMLVSRVETRA 93 Query: 66 LADISARMALTDISEQLAPVAQAPPAIIRRLASNDEIRIARPILQESSRLSADDLVEIAQ 125 A++S + LAPV AP +I+RLA +DEI +A +L S+RLS LVE+A Sbjct: 94 RAELS---------KHLAPVDYAPVDVIQRLARDDEISVAESVLMHSTRLSEHTLVEVAS 144 Query: 126 TKSEQHLLAVAGRWWLKEVVTDALLARRFASVSHRLVSNPGAKVSPGGFAVILAQAEHDP 185 TK + HL+A++ R L E VTD ++ R V +L +N A+ S G++ ++A AE D Sbjct: 145 TKGQDHLMAISSRPHLTEAVTDIIVDRGERRVIRKLANNQTARFSETGYSGMMAHAEDDD 204 Query: 186 VLAVQTGIRADLPSELRLQLLHDATEEVRARLLERAPAHLFEEIRNAIAAVAAGVERDMA 245 L G+R DLP++ LL AT+ VR +L+ AP L +EI+ + ++ D Sbjct: 205 ELTEIIGLRVDLPNKHLRDLLRRATDSVRTKLMASAPPALQKEIKKVLKTISDVARSDGG 264 Query: 246 RV-RDFAAARRHIAKLKDAGDLNEAALLGLARQRMYEETIVALADLAHASIEVIRPLMQS 304 V RDF A + ++K +LN+ A+ A R + E AL L + E++ +++ Sbjct: 265 LVGRDFTLAEEAVKRMKGLNELNDTAIAFFAETRRFGEVAAALGLLNNVPTEMMAKVLEG 324 Query: 305 LRSEGLLVPCRVAGLSWETTAAVMECRYSTGSMGPVELANARSQFTRLTHANADRLLRFW 364 R++ +L+PCR AGL W A ++ R ++ L A +TRL+ A R LRFW Sbjct: 325 PRTDIVLIPCRAAGLIWPAVAKILTHRPIKHAIDSETLKLAERDYTRLSLDTAQRTLRFW 384 Query: 365 QV 366 V Sbjct: 385 MV 386