BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0002.p (424 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_530108.1| MiaB-like tRNA modifying protein [Rhodopseudomo... 696 0.0 ref|NP_767116.1| hypothetical protein bll0476 [Bradyrhizobium ja... 689 0.0 ref|ZP_08628022.1| MiaB family protein [Bradyrhizobiaceae bacter... 685 0.0 ref|YP_001202578.1| putative MiaB-like tRNA modifying enzyme [Br... 679 0.0 ref|YP_578763.1| MiaB-like tRNA modifying enzyme [Nitrobacter ha... 664 0.0 >ref|YP_530108.1| MiaB-like tRNA modifying protein [Rhodopseudomonas palustris BisB18] gb|ABD85789.1| MiaB-like tRNA modifying enzyme [Rhodopseudomonas palustris BisB18] Length = 420 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/420 (80%), Positives = 378/420 (90%), Gaps = 1/420 (0%) Query: 1 MGIDVVTFGCRLNAFESEVIRREAEQAGLTDAIVINSCAVTNEAVAQARQSIRKLKRERP 60 M ++VVTFGCRLNAFESE+IRR+AE AG TD IV+NSCAVTNEAVAQARQSIR+LKRERP Sbjct: 1 MSVEVVTFGCRLNAFESELIRRQAEAAGCTDTIVVNSCAVTNEAVAQARQSIRRLKRERP 60 Query: 61 QARIVVTGCAAQTQSQMFADMAEVDRVVGNDEKMRGDAWRATRSAFEAPFGIDASEKVAV 120 ARIVVTGCAAQTQ+ MFADM EVDRV+GND+KMRG AWRA ++AF A + +EK+AV Sbjct: 61 SARIVVTGCAAQTQAAMFADMVEVDRVLGNDDKMRGTAWRAAQTAFAAG-PVPGAEKIAV 119 Query: 121 ADIMAVTEMAPHLLDGFERGLPRVFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQV 180 ADIMAV EMAPHLLDG++ GLPRVFVQVQNGCDHRCTFCIIP+GRGNSRSVP+ A V+QV Sbjct: 120 ADIMAVREMAPHLLDGYQSGLPRVFVQVQNGCDHRCTFCIIPFGRGNSRSVPLAAAVEQV 179 Query: 181 RALVERGHAEIVLTGVDLTSYGADLPGAPKLGQLTRQILRHVPELKRLRISSIDSIEADR 240 RAL ERGHAEIVLTGVDLTSYGADL GAP LG LT+QILR VPEL+RLRISSIDSIEAD Sbjct: 180 RALTERGHAEIVLTGVDLTSYGADLAGAPTLGLLTKQILREVPELQRLRISSIDSIEADA 239 Query: 241 DLLDVIADDARLMPHLHLSLQSGDDMILKRMKRRHSRRDAIDFCAQVRRLRPDIALGADI 300 DLLDV+A++ RLMPHLHLSLQSGDD+ILKRMKRRH R AI+FCAQ+RRLRPDIALGAD+ Sbjct: 240 DLLDVVANEPRLMPHLHLSLQSGDDLILKRMKRRHCRAQAIEFCAQLRRLRPDIALGADL 299 Query: 301 IAGFPTESEEMFARSLDLVEECDLTFLHVFPYSRRPGTPAARMPQVEGGAIKERARQLRT 360 IAGFPTE++EMFARSLDLVE CDL+ LHVFPYS RPGT AA+MPQV+G A+K+RA++LR Sbjct: 300 IAGFPTETDEMFARSLDLVEACDLSLLHVFPYSPRPGTAAAKMPQVDGNAVKQRAKRLRE 359 Query: 361 AGEAALLRRLDAEVGATREVLIESGTQGRTEHFLPVAIDDDVPGAVRRLVVTGHDGARLV 420 AG+AALLRRLDAE+GA REVLIES +QGRTEHFLPVAI D PGAVRRL +TGHDGARL Sbjct: 360 AGDAALLRRLDAEIGAAREVLIESPSQGRTEHFLPVAIAGDTPGAVRRLTITGHDGARLT 419 >ref|NP_767116.1| hypothetical protein bll0476 [Bradyrhizobium japonicum USDA 110] dbj|BAC45741.1| bll0476 [Bradyrhizobium japonicum USDA 110] Length = 417 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/419 (82%), Positives = 370/419 (88%), Gaps = 4/419 (0%) Query: 1 MGIDVVTFGCRLNAFESEVIRREAEQAGLTDAIVINSCAVTNEAVAQARQSIRKLKRERP 60 M +++VTFGCRLNAFE+EVIR +AE AGL D IVINSCAVTNEAVAQARQSIRKLKRERP Sbjct: 1 MSVEIVTFGCRLNAFEAEVIRSKAEGAGLVDTIVINSCAVTNEAVAQARQSIRKLKRERP 60 Query: 61 QARIVVTGCAAQTQSQMFADMAEVDRVVGNDEKMRGDAWRATRSAFEAPFGIDASEKVAV 120 ARIVVTGCAAQTQS+MFADMAEVDRVVGND+KMR DAWR R AF+ I A EK+AV Sbjct: 61 GARIVVTGCAAQTQSRMFADMAEVDRVVGNDDKMRSDAWREARDAFD----IGAREKIAV 116 Query: 121 ADIMAVTEMAPHLLDGFERGLPRVFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQV 180 +DIMAV EMAPHL+DGF GLPRVFVQVQNGCDHRCTFCIIP+GRGNSRSVPMGAVV+QV Sbjct: 117 SDIMAVKEMAPHLVDGFASGLPRVFVQVQNGCDHRCTFCIIPFGRGNSRSVPMGAVVEQV 176 Query: 181 RALVERGHAEIVLTGVDLTSYGADLPGAPKLGQLTRQILRHVPELKRLRISSIDSIEADR 240 RAL ERGHAEIVLTGVDLTSYGADLPGAPKLG LT+QILRHVPELKRLRISSIDSIEAD Sbjct: 177 RALAERGHAEIVLTGVDLTSYGADLPGAPKLGMLTKQILRHVPELKRLRISSIDSIEADN 236 Query: 241 DLLDVIADDARLMPHLHLSLQSGDDMILKRMKRRHSRRDAIDFCAQVRRLRPDIALGADI 300 DLLD IADDARLMPHLHLSLQSGDDMILKRMKRRH R DAI FC QVRRLRPD+A GADI Sbjct: 237 DLLDAIADDARLMPHLHLSLQSGDDMILKRMKRRHLRGDAIAFCDQVRRLRPDVAFGADI 296 Query: 301 IAGFPTESEEMFARSLDLVEECDLTFLHVFPYSRRPGTPAARMPQVEGGAIKERARQLRT 360 IAGFPTE+E MF+RSLDLVEEC LTFLHVFPYS RPGTPAARMPQV G IKERAR+LR Sbjct: 297 IAGFPTETEAMFSRSLDLVEECGLTFLHVFPYSPRPGTPAARMPQVAGPEIKERARRLRA 356 Query: 361 AGEAALLRRLDAEVGATREVLIESGTQGRTEHFLPVAIDDDVPGAVRRLVVTGHDGARL 419 AGEAAL +RL AE+GATR+VLIES +QGRTEH+LPVAI G+V ++ G DG RL Sbjct: 357 AGEAALRQRLQAEIGATRDVLIESESQGRTEHYLPVAIAGARVGSVVPRMIVGSDGERL 415 >ref|ZP_08628022.1| MiaB family protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09317.1| MiaB family protein [Bradyrhizobiaceae bacterium SG-6C] Length = 416 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/420 (79%), Positives = 370/420 (88%), Gaps = 5/420 (1%) Query: 1 MGIDVVTFGCRLNAFESEVIRREAEQAGLTDAIVINSCAVTNEAVAQARQSIRKLKRERP 60 M +DV+TFGCRLN+FES+VIRREAE AGL D IV+N+CAVTNEAVAQARQ+IRKL+RERP Sbjct: 1 MAVDVITFGCRLNSFESDVIRREAEGAGLQDTIVVNTCAVTNEAVAQARQTIRKLRRERP 60 Query: 61 QARIVVTGCAAQTQSQMFADMAEVDRVVGNDEKMRGDAWRATRSAFEAPFGIDASEKVAV 120 ARIVVTGCAAQTQ+ MFA M+EVDRV+GND+KMR DAWR+TR AF+ DA EK++V Sbjct: 61 GARIVVTGCAAQTQTDMFAQMSEVDRVLGNDDKMRSDAWRSTRLAFD-----DAGEKISV 115 Query: 121 ADIMAVTEMAPHLLDGFERGLPRVFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQV 180 +DIMAVTEMAPHL GF+ GLPRVFVQVQNGCDHRCTFCIIPYGRGNSRSV MGAVVDQV Sbjct: 116 SDIMAVTEMAPHLAAGFQSGLPRVFVQVQNGCDHRCTFCIIPYGRGNSRSVAMGAVVDQV 175 Query: 181 RALVERGHAEIVLTGVDLTSYGADLPGAPKLGQLTRQILRHVPELKRLRISSIDSIEADR 240 RAL E GHAEIVLTGVDLTSYG DLPGAP LG LT+QIL+HVPEL+RLRISSIDSIEADR Sbjct: 176 RALTEAGHAEIVLTGVDLTSYGGDLPGAPTLGMLTKQILKHVPELRRLRISSIDSIEADR 235 Query: 241 DLLDVIADDARLMPHLHLSLQSGDDMILKRMKRRHSRRDAIDFCAQVRRLRPDIALGADI 300 DLLDVIA D RLMPHLHLSLQ+GDDMILKRMKRRHSR DAI FC QVRRLRPDIA GADI Sbjct: 236 DLLDVIATDERLMPHLHLSLQAGDDMILKRMKRRHSRADAIAFCNQVRRLRPDIAFGADI 295 Query: 301 IAGFPTESEEMFARSLDLVEECDLTFLHVFPYSRRPGTPAARMPQVEGGAIKERARQLRT 360 IAGFPTE+E+MFARS LV++CDLTFLHVFPYS RPGTPAARMPQV+G IK+RAR+LR Sbjct: 296 IAGFPTETEDMFARSQALVDDCDLTFLHVFPYSARPGTPAARMPQVDGHVIKDRARRLRA 355 Query: 361 AGEAALLRRLDAEVGATREVLIESGTQGRTEHFLPVAIDDDVPGAVRRLVVTGHDGARLV 420 G+AAL RRL ++ G TR VLIES TQGRTEHF+PVA+ +PGAV L +TGHDG RL+ Sbjct: 356 NGQAALQRRLSSDAGTTRSVLIESATQGRTEHFVPVAVAGGIPGAVHALQMTGHDGERLL 415 >ref|YP_001202578.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. ORS 278] emb|CAL74332.1| putative MiaB-like tRNA modifying enzyme [Bradyrhizobium sp. ORS 278] Length = 443 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/422 (81%), Positives = 372/422 (88%), Gaps = 1/422 (0%) Query: 1 MGIDVVTFGCRLNAFESEVIRREAEQAGLTDAIVINSCAVTNEAVAQARQSIRKLKRERP 60 M +DVVTFGCRLNAFESE+I R E AG D IVINSCAVTNEAVAQARQSIRKLKRERP Sbjct: 1 MSVDVVTFGCRLNAFESELIARHVEAAGADDTIVINSCAVTNEAVAQARQSIRKLKRERP 60 Query: 61 QARIVVTGCAAQTQSQMFADMAEVDRVVGNDEKMRGDAWRATRSAFEAP-FGIDASEKVA 119 ARIVVTGCAAQTQ+ MFA M EVDRV+GND+K+R DAWRAT AP FGIDA+EKVA Sbjct: 61 YARIVVTGCAAQTQADMFAAMPEVDRVIGNDDKLRPDAWRATTQVLAAPRFGIDATEKVA 120 Query: 120 VADIMAVTEMAPHLLDGFERGLPRVFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQ 179 V+DIMAVTEMAPHL+DGF+RGLPRVFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQ Sbjct: 121 VSDIMAVTEMAPHLVDGFQRGLPRVFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQ 180 Query: 180 VRALVERGHAEIVLTGVDLTSYGADLPGAPKLGQLTRQILRHVPELKRLRISSIDSIEAD 239 VR L ERGHAEIVLTGVDLTSYGADLPG PKLG L +QILRHVPELKRLRISSIDSIEAD Sbjct: 181 VRTLAERGHAEIVLTGVDLTSYGADLPGTPKLGLLVKQILRHVPELKRLRISSIDSIEAD 240 Query: 240 RDLLDVIADDARLMPHLHLSLQSGDDMILKRMKRRHSRRDAIDFCAQVRRLRPDIALGAD 299 DLLD +ADDARLMPHLHLSLQ+GDD+ILKRMKRRH R DAI FC QVRRLRPDIALGAD Sbjct: 241 ADLLDALADDARLMPHLHLSLQAGDDLILKRMKRRHVRADAIAFCDQVRRLRPDIALGAD 300 Query: 300 IIAGFPTESEEMFARSLDLVEECDLTFLHVFPYSRRPGTPAARMPQVEGGAIKERARQLR 359 +IAGFPTE+EEMF RSLDLVE C LT LHVFPYS RPGTPAARMPQV+G I++RAR+LR Sbjct: 301 LIAGFPTETEEMFTRSLDLVEACGLTLLHVFPYSPRPGTPAARMPQVDGAVIRDRARRLR 360 Query: 360 TAGEAALLRRLDAEVGATREVLIESGTQGRTEHFLPVAIDDDVPGAVRRLVVTGHDGARL 419 GEAAL RRLDAE+G REVLIES TQGRTEH+LPV++ PG+V+RLV+ GHDG +L Sbjct: 361 AVGEAALRRRLDAEIGCAREVLIESATQGRTEHYLPVSVTGAEPGSVQRLVIAGHDGGKL 420 Query: 420 VA 421 A Sbjct: 421 SA 422 >ref|YP_578763.1| MiaB-like tRNA modifying enzyme [Nitrobacter hamburgensis X14] gb|ABE64303.1| MiaB-like tRNA modifying enzyme [Nitrobacter hamburgensis X14] Length = 423 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/422 (79%), Positives = 372/422 (88%), Gaps = 2/422 (0%) Query: 1 MGIDVVTFGCRLNAFESEVIRREAEQAGLTDAIVINSCAVTNEAVAQARQSIRKLKRERP 60 M IDVVTFGCRLNAFESEVIRR A+ AGL D +++N+CAVTNEAVAQARQSIRKLKRERP Sbjct: 1 MTIDVVTFGCRLNAFESEVIRRNADDAGLDDVVIVNTCAVTNEAVAQARQSIRKLKRERP 60 Query: 61 QARIVVTGCAAQTQSQMFADMAEVDRVVGNDEKMRGDAWRATRSAFEA--PFGIDASEKV 118 ARIVVTGCAAQ + MFA M EVDRV+GND+KMRGD WR R+AF A FGI EK+ Sbjct: 61 SARIVVTGCAAQIEPTMFAQMPEVDRVIGNDDKMRGDTWRDARTAFAAVADFGIANEEKI 120 Query: 119 AVADIMAVTEMAPHLLDGFERGLPRVFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVD 178 AVADIMAVTEMAPHL++GF+ GLPR FVQVQNGCDHRCTFCIIP+GRGNSRSVPMGAVVD Sbjct: 121 AVADIMAVTEMAPHLVEGFQGGLPRAFVQVQNGCDHRCTFCIIPFGRGNSRSVPMGAVVD 180 Query: 179 QVRALVERGHAEIVLTGVDLTSYGADLPGAPKLGQLTRQILRHVPELKRLRISSIDSIEA 238 QVR LVE GHAEIVLTGVDLTSYGADLPG P+LG L ++ILRHVPE++RLRISSIDSIEA Sbjct: 181 QVRVLVEAGHAEIVLTGVDLTSYGADLPGGPRLGGLIKRILRHVPEMRRLRISSIDSIEA 240 Query: 239 DRDLLDVIADDARLMPHLHLSLQSGDDMILKRMKRRHSRRDAIDFCAQVRRLRPDIALGA 298 DRDLLD +A++ RLMPHLHLSLQSGDDMILKRMKRRHSRRDAIDFCAQVRRLRPDIA GA Sbjct: 241 DRDLLDAVANEERLMPHLHLSLQSGDDMILKRMKRRHSRRDAIDFCAQVRRLRPDIAFGA 300 Query: 299 DIIAGFPTESEEMFARSLDLVEECDLTFLHVFPYSRRPGTPAARMPQVEGGAIKERARQL 358 DIIAGFPTE+++MFARSLDLV +CDLTFLHVFPYS RPGTPA RMP V G IK+RA QL Sbjct: 301 DIIAGFPTETDDMFARSLDLVADCDLTFLHVFPYSPRPGTPAVRMPPVAGEVIKDRAGQL 360 Query: 359 RTAGEAALLRRLDAEVGATREVLIESGTQGRTEHFLPVAIDDDVPGAVRRLVVTGHDGAR 418 R A AAL RRL A++GATR+VLIES TQGRTEHF+PVAI + PGAVR +++GHDGAR Sbjct: 361 RAAAGAALRRRLAADIGATRQVLIESATQGRTEHFVPVAIAGETPGAVRTRMISGHDGAR 420 Query: 419 LV 420 L+ Sbjct: 421 LL 422